pycom07g06040

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0009358
Physical Location & Seq
Forward (+)
5350235 .. 5351543
1309 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g06040.1

Sequence Viewer

Length: 786 bp
ATGTATGCTTTTGTTCTGTATGGCTGGTACAAAAAGGACATACGGTTTTGTCAAAGCTACAGTTTACAGGTTCTTCTGGCTGAAAAATCAGCCAAAGTTGCTGCCTTACTCAAACGGAAATCGCAGATCCTCTTGAGCTTGTTGCCATATTCTACCACGCCTGTCATCCTTCAAATGAATAAGCATAGAGTTCCATCGCCGTACGTGGCTGCATCCCTTTGTGACTATACAAGGAAATGGGTTTTCTCTGGCAGTGGAGAGGAAGATACGATGAACTACCAAAGGGAGATACTTGAAGCAGTGGAGAGGCTGTTGCCTCGTGACATTGGACTACTTCCATGCACATTATCCTCCGTTTCATTATTCTTTTGGAAGCGACTGAACTCATTTGAAAAATTCTTGGCTGAAGTTGCCAGTGACATAGGTAAGATAGATACATTTGTTGAATTAGCAGAGATGTCAATTGCGGCATCGTTGGGAATACAAAGAACCTTGAATGGAATATACAGGGCAGTTCATATCTACTTAGATAAGCACAGGCACTTGACAGAGATGGAACGAGAGGAAGTGGCAGGGCAGTTGCAGCTGCGGGTTACAATCATCAAGGAGGTGCAGGGTTTGGACGAAAGATCAACAAAGCAGGCTGCAGAGGAGAATGAAGCAAAGTTGGATGTTGGTGAGGGAAAAATGAGATCCGAAATGGAGAAAATGAGCATAATGGTGATGGAGCTTGAAAGAGAGTGCTATAAGATGAGGAAAGAGATTGAGAATGGCTGCAGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

262

Amino Acids

30.02

Weight (kDa)

6.92

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 131 - 194 2.4e-10 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 467, 589
AclWI GGATC 2 cut(s) 121, 687
AcsI RAATTY 1 cut(s) 395
AcuI CTGAAG 1 cut(s) 426
AfaI GTAC 2 cut(s) 29, 203
AgsI TTSAA 6 cut(s) 173, 296, 392, 446, 496, 734
AluBI AGCT 5 cut(s) 57, 138, 586, 730, 780
AluI AGCT 5 cut(s) 57, 138, 586, 730, 780
AlwI GGATC 2 cut(s) 121, 687
ApeKI GCWGC 7 cut(s) 101, 209, 583, 586, 644, 774, 777
ApoI RAATTY 1 cut(s) 395
AsuHPI GGTGA 2 cut(s) 689, 733
BaeI ACNNNNGTAYC 2 cut(s) 426, 459
BauI CACGAG 1 cut(s) 318
BbvI GCAGC 6 cut(s) 88, 196, 573, 595, 631, 761
BccI CCATC 3 cut(s) 202, 547, 718
BceAI ACGGC 1 cut(s) 184
BfmI CTRYAG 3 cut(s) 58, 645, 775
BisI GCNGC 8 cut(s) 102, 210, 468, 584, 587, 645, 775, 778
BlsI GCNGC 8 cut(s) 103, 211, 469, 585, 588, 646, 776, 779
BmsI GCATC 2 cut(s) 221, 479
BpuEI CTTGAG 1 cut(s) 154
BsaAI YACGTR 1 cut(s) 205
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bse1I ACTGG 1 cut(s) 414
BseGI GGATG 3 cut(s) 165, 212, 676
BseNI ACTGG 1 cut(s) 414
BseRI GAGGAG 1 cut(s) 665
BseXI GCAGC 6 cut(s) 88, 196, 573, 595, 631, 761
BsgI GTGCAG 1 cut(s) 632
BsiWI CGTACG 1 cut(s) 201
Bsp143I GATC 3 cut(s) 126, 629, 692
BspACI CCGC 2 cut(s) 467, 589
BspMAI CTGCAG 2 cut(s) 649, 779
BspPI GGATC 2 cut(s) 121, 687
BsrI ACTGG 1 cut(s) 414
BssMI GATC 3 cut(s) 126, 629, 692
BssSI CACGAG 1 cut(s) 318
Bst2BI CACGAG 1 cut(s) 318
Bst4CI ACNGT 2 cut(s) 45, 62
BstBAI YACGTR 1 cut(s) 205
BstC8I GCNNGC 1 cut(s) 642
BstDEI CTNAG 1 cut(s) 526
BstF5I GGATG 3 cut(s) 165, 212, 676
BstKTI GATC 3 cut(s) 129, 632, 695
BstMBI GATC 3 cut(s) 126, 629, 692
BstMWI GCNNNNNNNGC 3 cut(s) 98, 410, 583
BstSFI CTRYAG 3 cut(s) 58, 645, 775
BstV1I GCAGC 6 cut(s) 88, 196, 573, 595, 631, 761
BstX2I RGATCY 2 cut(s) 126, 692
BstYI RGATCY 2 cut(s) 126, 692
BtgZI GCGATG 1 cut(s) 180
BtsCI GGATG 3 cut(s) 165, 212, 676
BtsI GCAGTG 2 cut(s) 259, 306
BtsIMutI CAGTG 3 cut(s) 259, 306, 421
Cac8I GCNNGC 1 cut(s) 642
Csp6I GTAC 2 cut(s) 28, 202
CviAII CATG 1 cut(s) 339
CviQI GTAC 2 cut(s) 28, 202
DdeI CTNAG 1 cut(s) 526
DpnI GATC 3 cut(s) 128, 631, 694
DpnII GATC 3 cut(s) 126, 629, 692
Eco57I CTGAAG 1 cut(s) 426
FaeI CATG 1 cut(s) 342
FatI CATG 1 cut(s) 338
FauI CCCGC 1 cut(s) 582
Fnu4HI GCNGC 8 cut(s) 102, 210, 468, 584, 587, 645, 775, 778
FokI GGATG 3 cut(s) 152, 199, 683
Fsp4HI GCNGC 8 cut(s) 102, 210, 468, 584, 587, 645, 775, 778
GluI GCNGC 8 cut(s) 102, 210, 468, 584, 587, 645, 775, 778
Hin1II CATG 1 cut(s) 342
HphI GGTGA 2 cut(s) 689, 733
Hpy166II GTNNAC 1 cut(s) 65
Hpy188I TCNGA 1 cut(s) 697
Hpy188III TCNNGA 2 cut(s) 133, 320
Hpy8I GTNNAC 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 2 cut(s) 45, 62
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 6 cut(s) 212, 342, 583, 613, 647, 777
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 410, 583
HpyF3I CTNAG 1 cut(s) 526
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 1 cut(s) 342
Kzo9I GATC 3 cut(s) 126, 629, 692
LmnI GCTCC 1 cut(s) 727
Lsp1109I GCAGC 6 cut(s) 88, 196, 573, 595, 631, 761
LweI GCATC 2 cut(s) 221, 479
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 4 cut(s) 221, 320, 416, 592
MalI GATC 3 cut(s) 128, 631, 694
MboI GATC 3 cut(s) 126, 629, 692
MboII GAAGA 2 cut(s) 65, 275
MfeI CAATTG 1 cut(s) 462
MflI RGATCY 2 cut(s) 126, 692
MluCI AATT 3 cut(s) 395, 446, 462
MmeI TCCRAC 1 cut(s) 648
MslI CAYNNNNRTG 1 cut(s) 719
MspA1I CMGCKG 1 cut(s) 586
MunI CAATTG 1 cut(s) 462
MwoI GCNNNNNNNGC 3 cut(s) 98, 410, 583
NdeII GATC 3 cut(s) 126, 629, 692
NlaIII CATG 1 cut(s) 342
NmuCI GTSAC 3 cut(s) 221, 320, 416
Pfl23II CGTACG 1 cut(s) 201
PkrI GCNGC 8 cut(s) 103, 211, 469, 585, 588, 646, 776, 779
Ppu21I YACGTR 1 cut(s) 205
PspLI CGTACG 1 cut(s) 201
PstI CTGCAG 2 cut(s) 649, 779
PsuI RGATCY 2 cut(s) 126, 692
PvuII CAGCTG 1 cut(s) 586
RsaI GTAC 2 cut(s) 29, 203
RsaNI GTAC 2 cut(s) 28, 202
RseI CAYNNNNRTG 1 cut(s) 719
SatI GCNGC 8 cut(s) 102, 210, 468, 584, 587, 645, 775, 778
Sau3AI GATC 3 cut(s) 126, 629, 692
SfaNI GCATC 2 cut(s) 221, 479
SfcI CTRYAG 3 cut(s) 58, 645, 775
SmiMI CAYNNNNRTG 1 cut(s) 719
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
Sse9I AATT 3 cut(s) 395, 446, 462
SsiI CCGC 2 cut(s) 467, 589
TaaI ACNGT 2 cut(s) 45, 62
TaiI ACGT 1 cut(s) 207
TasI AATT 3 cut(s) 395, 446, 462
TauI GCSGC 1 cut(s) 470
TscAI CASTG 3 cut(s) 259, 306, 421
TseFI GTSAC 3 cut(s) 221, 320, 416
TseI GCWGC 7 cut(s) 101, 209, 583, 586, 644, 774, 777
Tsp45I GTSAC 3 cut(s) 221, 320, 416
TspDTI ATGAA 5 cut(s) 191, 287, 348, 506, 672
TspGWI ACGGA 2 cut(s) 130, 343
TspRI CASTG 3 cut(s) 259, 306, 421
XapI RAATTY 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.