AT3G03510

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009358
Physical Location & Seq
Forward (+)
836039 .. 837707
1669 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G03510.1

Sequence Viewer

Length: 1368 bp
ATGGACATCAACCCAAGTATCTTCCACCTCGTGACTAGATTCTGTTATGGATACAAAATCGAATTATCAGCTGACAATATCGTCTCTGTGTTATGCATTGCTTATTACCTAGAGATGAGCGATGATCATAGCTCTAACAACTTGTTGAACAAGGCAGTTACGTTCTTGGAACAACGAGTTCTTATGAGCTGGAGTGAGACCGTGAAAGCTCTTTGTATCTGCAGCGATAAGATTTTGGACAAACTAGCTAATGTTGGACTCATCGAAGTTTTCTTAGATTCTCTTATCGAAAAGGCTCTCAACGATACTAGGTTGCTCCAAGATTTGATTACATTACCACTTCGGTTATATGAACCATTGATTCTAGAAGTGAGTAAGCACAATGTCTCGTTAGAAAACCTTGTGGCCTCTGTCTGCAATTACGCGAATAGATGGGTTTTCGAGAAAGATTCGGGAGACGGAAGCGTTTCAAGAAACAAGAGAGAAGGAATTGAAGCTGTTGAGAGGCTTTTGCCTCACCAAAGAGGAACAATCTCGTCTGGATTTCTGTTCAAATCGCTGAAAGAATCGATTTTTCTTGGTGCTTGCTCTGATTGCCGAAAAGGGTTTGAAGTTAGGATAAGTAACCAGCTTGACATGGCTAGAGCAAAAGATCTCCAGATTCTGTCACCAACAGAAGATGGATCTTATGACATCGAGCTCTTGAAAACCATTCTCAAGAGCTTCTATAGTAACGATAGTGTCCCGGATCTTTCGCGGTTTGTGAGTGTAGCGAGAATGTTGGAAGAGTTTCTGTTGGAGGCTGCTGCGAGTGATGCTGGTTTAAGGGTAGGAACATTCAAGGAACTAGCAGAAATTGCAGTTGCTGCGTCTTGTGATGTGCTGAGTTACTCTGATGGAATATACAGAGCGATTGATGTTTACTTGGAGAGGCATAGAGACTTGATTGAATCGGAGAAGATGGAAGCTTGTAGGTTTCTTCATTGTAAGAAACTTTCACCCGAGGCTTGTGAACATGCTTCAAAGAACGAGAAGCTTCCATTGAGGATTGTTATGCAAGTTTTGTTTGTTTCTCAGATGCAGATTCGGGATAAGGTGGCTAGAGAAATGAAAGGTGTAGTGGAGAGAACAGAAAATCAAGTAGATGAAGTGGAGAGTATGAGTAAGAAGTTGTTAAAGCTCGAGATAGAACCTGATTACATGAAGAAAAGAAAGATTGAGAATCTTGAATGTGTTGTTCATTGCGAGAAGAAGAAGACAAGTGTGTGGAGAGAAGTAAAGAGGAAGTTTGGTTGTATGACTTCTTCTACCATGGATGCTTGCAGTTGTCATATCAAGAAGAGGAAGACTTATCATAGCTACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

455

Amino Acids

51.93

Weight (kDa)

6.59

Isoelectric Point (pI)

50.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 106 - 337 2.6e-53 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
AccII CGCG 2 cut(s) 425, 757
AciI CCGC 1 cut(s) 757
AclWI GGATC 2 cut(s) 691, 756
AdeI CACNNNGTG 1 cut(s) 31
Alw21I GWGCWC 1 cut(s) 702
Alw26I GTCTC 5 cut(s) 88, 191, 391, 450, 933
AlwI GGATC 2 cut(s) 691, 756
AlwNI CAGNNNCTG 2 cut(s) 664, 866
Ama87I CYCGRG 2 cut(s) 1001, 1181
AoxI GGCC 1 cut(s) 405
ApeKI GCWGC 4 cut(s) 222, 803, 806, 866
Asp700I GAANNNNTTC 2 cut(s) 466, 789
AsuC2I CCSGG 1 cut(s) 746
AsuHPI GGTGA 3 cut(s) 509, 660, 990
AvaI CYCGRG 2 cut(s) 1001, 1181
BaeI ACNNNNGTAYC 1 cut(s) 34
BanII GRGCYC 1 cut(s) 702
BarI GAAGNNNNNNTAC 2 cut(s) 1288, 1320
BauI CACGAG 1 cut(s) 29
BbsI GAAGAC 2 cut(s) 1262, 1352
Bbv12I GWGCWC 1 cut(s) 702
BbvI GCAGC 4 cut(s) 234, 790, 793, 853
BccI CCATC 4 cut(s) 426, 674, 890, 955
BciVI GTATCC 1 cut(s) 44
BclI TGATCA 1 cut(s) 124
BcnI CCSGG 1 cut(s) 746
BcoDI GTCTC 5 cut(s) 88, 191, 391, 450, 933
BfaI CTAG 8 cut(s) 36, 110, 245, 309, 365, 642, 848, 1101
BfmI CTRYAG 2 cut(s) 220, 727
BfuI GTATCC 1 cut(s) 44
BglII AGATCT 1 cut(s) 652
BisI GCNGC 4 cut(s) 223, 804, 807, 867
BlsI GCNGC 4 cut(s) 224, 805, 808, 868
Bme1390I CCNGG 1 cut(s) 746
BmeT110I CYCGRG 2 cut(s) 1001, 1181
BmrFI CCNGG 1 cut(s) 746
BmsI GCATC 3 cut(s) 805, 1068, 1306
BpiI GAAGAC 2 cut(s) 1262, 1352
BpmI CTGGAG 2 cut(s) 211, 641
BpuEI CTTGAG 1 cut(s) 701
BpuMI CCSGG 1 cut(s) 746
Bsa29I ATCGAT 1 cut(s) 569
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 2 cut(s) 1002, 1311
Bse3DI GCAATG 2 cut(s) 96, 1240
BseCI ATCGAT 1 cut(s) 569
BseDI CCNNGG 2 cut(s) 1002, 1311
BseGI GGATG 1 cut(s) 1321
BseMI GCAATG 2 cut(s) 96, 1240
BseMII CTCAG 2 cut(s) 875, 1088
BseXI GCAGC 4 cut(s) 234, 790, 793, 853
Bsh1236I CGCG 2 cut(s) 425, 757
BshFI GGCC 1 cut(s) 407
BshVI ATCGAT 1 cut(s) 569
BsiHKAI GWGCWC 1 cut(s) 702
BsiHKCI CYCGRG 2 cut(s) 1001, 1181
BsiSI CCGG 1 cut(s) 746
BslFI GGGAC 1 cut(s) 728
BsmAI GTCTC 5 cut(s) 88, 191, 391, 450, 933
BsmBI CGTCTC 2 cut(s) 88, 450
BsmFI GGGAC 1 cut(s) 728
BsnI GGCC 1 cut(s) 407
Bso31I GGTCTC 1 cut(s) 191
BsoBI CYCGRG 2 cut(s) 1001, 1181
Bsp1286I GDGCHC 1 cut(s) 702
Bsp143I GATC 4 cut(s) 124, 652, 683, 748
Bsp19I CCATGG 1 cut(s) 1311
BspACI CCGC 1 cut(s) 757
BspANI GGCC 1 cut(s) 407
BspCNI CTCAG 2 cut(s) 876, 1087
BspDI ATCGAT 1 cut(s) 569
BspFNI CGCG 2 cut(s) 425, 757
BspMAI CTGCAG 1 cut(s) 224
BspPI GGATC 2 cut(s) 691, 756
BspTNI GGTCTC 1 cut(s) 191
BsrDI GCAATG 2 cut(s) 96, 1240
BssECI CCNNGG 2 cut(s) 1002, 1311
BssMI GATC 4 cut(s) 124, 652, 683, 748
BssSI CACGAG 1 cut(s) 29
BssT1I CCWWGG 1 cut(s) 1311
Bst2BI CACGAG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 202
Bst6I CTCTTC 2 cut(s) 780, 1334
BstAPI GCANNNNNTGC 2 cut(s) 857, 866
BstC8I GCNNGC 2 cut(s) 586, 1321
BstDEI CTNAG 3 cut(s) 274, 884, 1074
BstDSI CCRYGG 1 cut(s) 1311
BstF5I GGATG 1 cut(s) 1321
BstFNI CGCG 2 cut(s) 425, 757
BstKTI GATC 4 cut(s) 127, 655, 686, 751
BstMAI GTCTC 5 cut(s) 88, 191, 391, 450, 933
BstMBI GATC 4 cut(s) 124, 652, 683, 748
BstMWI GCNNNNNNNGC 4 cut(s) 594, 815, 857, 866
BstNSI RCATGY 1 cut(s) 1019
BstSCI CCNGG 1 cut(s) 744
BstSFI CTRYAG 2 cut(s) 220, 727
BstUI CGCG 2 cut(s) 425, 757
BstV1I GCAGC 4 cut(s) 234, 790, 793, 853
BstV2I GAAGAC 2 cut(s) 1262, 1352
BstX2I RGATCY 3 cut(s) 652, 683, 748
BstYI RGATCY 3 cut(s) 652, 683, 748
Bsu15I ATCGAT 1 cut(s) 569
BsuI GTATCC 1 cut(s) 44
BsuRI GGCC 1 cut(s) 407
BsuTUI ATCGAT 1 cut(s) 569
BtgI CCRYGG 1 cut(s) 1311
BtgZI GCGATG 1 cut(s) 135
BtsCI GGATG 1 cut(s) 1321
Cac8I GCNNGC 2 cut(s) 586, 1321
CaiI CAGNNNCTG 2 cut(s) 664, 866
ClaI ATCGAT 1 cut(s) 569
CseI GACGC 1 cut(s) 858
CviAII CATG 4 cut(s) 637, 1016, 1201, 1312
DdeI CTNAG 3 cut(s) 274, 884, 1074
DpnI GATC 4 cut(s) 126, 654, 685, 750
DpnII GATC 4 cut(s) 124, 652, 683, 748
DraIII CACNNNGTG 1 cut(s) 31
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
Eam1104I CTCTTC 2 cut(s) 780, 1334
EarI CTCTTC 2 cut(s) 780, 1334
Ecl136II GAGCTC 1 cut(s) 700
Eco130I CCWWGG 1 cut(s) 1311
Eco24I GRGCYC 1 cut(s) 702
Eco31I GGTCTC 1 cut(s) 191
Eco53kI GAGCTC 1 cut(s) 700
Eco88I CYCGRG 2 cut(s) 1001, 1181
EcoICRI GAGCTC 1 cut(s) 700
EcoT14I CCWWGG 1 cut(s) 1311
EcoT22I ATGCAT 1 cut(s) 98
EcoT38I GRGCYC 1 cut(s) 702
ErhI CCWWGG 1 cut(s) 1311
Esp3I CGTCTC 2 cut(s) 88, 450
FaeI CATG 4 cut(s) 640, 1019, 1204, 1315
FaqI GGGAC 1 cut(s) 728
FatI CATG 4 cut(s) 636, 1015, 1200, 1311
FbaI TGATCA 1 cut(s) 124
Fnu4HI GCNGC 4 cut(s) 223, 804, 807, 867
FokI GGATG 1 cut(s) 1328
FriOI GRGCYC 1 cut(s) 702
Fsp4HI GCNGC 4 cut(s) 223, 804, 807, 867
FspBI CTAG 8 cut(s) 36, 110, 245, 309, 365, 642, 848, 1101
GluI GCNGC 4 cut(s) 223, 804, 807, 867
GsuI CTGGAG 2 cut(s) 211, 641
HaeIII GGCC 1 cut(s) 407
HapII CCGG 1 cut(s) 746
HgaI GACGC 1 cut(s) 858
Hin1II CATG 4 cut(s) 640, 1019, 1204, 1315
HindIII AAGCTT 2 cut(s) 966, 1034
HpaII CCGG 1 cut(s) 746
HphI GGTGA 3 cut(s) 509, 660, 990
Hpy166II GTNNAC 2 cut(s) 922, 1013
Hpy188I TCNGA 4 cut(s) 592, 895, 955, 1077
Hpy8I GTNNAC 2 cut(s) 922, 1013
HpyAV CCTTC 1 cut(s) 479
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4IV ACGT 1 cut(s) 161
HpyCH4V TGCA 7 cut(s) 96, 222, 417, 860, 1057, 1081, 1323
HpyF10VI GCNNNNNNNGC 4 cut(s) 594, 815, 857, 866
HpyF3I CTNAG 3 cut(s) 274, 884, 1074
HpySE526I ACGT 1 cut(s) 161
Hsp92II CATG 4 cut(s) 640, 1019, 1204, 1315
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 4 cut(s) 124, 652, 683, 748
LmnI GCTCC 1 cut(s) 321
LpnPI CCDG 7 cut(s) 175, 525, 641, 671, 759, 804, 1206
Lsp1109I GCAGC 4 cut(s) 234, 790, 793, 853
LweI GCATC 3 cut(s) 805, 1068, 1306
MaeI CTAG 8 cut(s) 36, 110, 245, 309, 365, 642, 848, 1101
MaeII ACGT 1 cut(s) 161
MaeIII GTNAC 6 cut(s) 31, 157, 623, 666, 731, 887
MalI GATC 4 cut(s) 126, 654, 685, 750
MboI GATC 4 cut(s) 124, 652, 683, 748
MflI RGATCY 3 cut(s) 652, 683, 748
MhlI GDGCHC 1 cut(s) 702
MluCI AATT 4 cut(s) 62, 418, 489, 855
MlyI GAGTC 1 cut(s) 252
MmeI TCCRAC 3 cut(s) 235, 762, 777
Mph1103I ATGCAT 1 cut(s) 98
MroXI GAANNNNTTC 2 cut(s) 466, 789
MseI TTAA 2 cut(s) 824, 1175
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 1 cut(s) 746
MspR9I CCNGG 1 cut(s) 746
MvnI CGCG 2 cut(s) 425, 757
MwoI GCNNNNNNNGC 4 cut(s) 594, 815, 857, 866
NciI CCSGG 1 cut(s) 746
NcoI CCATGG 1 cut(s) 1311
NdeII GATC 4 cut(s) 124, 652, 683, 748
NlaIII CATG 4 cut(s) 640, 1019, 1204, 1315
NmuCI GTSAC 2 cut(s) 31, 666
NsiI ATGCAT 1 cut(s) 98
NspI RCATGY 1 cut(s) 1019
PaeR7I CTCGAG 1 cut(s) 1181
PdmI GAANNNNTTC 2 cut(s) 466, 789
PfeI GAWTC 9 cut(s) 39, 278, 361, 449, 566, 661, 950, 1084, 1222
PfoI TCCNGGA 1 cut(s) 744
PkrI GCNGC 4 cut(s) 224, 805, 808, 868
PleI GAGTC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 252
Psp124BI GAGCTC 1 cut(s) 702
PstI CTGCAG 1 cut(s) 224
PstNI CAGNNNCTG 2 cut(s) 664, 866
PsuI RGATCY 3 cut(s) 652, 683, 748
PvuII CAGCTG 1 cut(s) 71
SacI GAGCTC 1 cut(s) 702
SaqAI TTAA 2 cut(s) 824, 1175
SatI GCNGC 4 cut(s) 223, 804, 807, 867
Sau3AI GATC 4 cut(s) 124, 652, 683, 748
SchI GAGTC 1 cut(s) 252
ScrFI CCNGG 1 cut(s) 746
SduI GDGCHC 1 cut(s) 702
SfaNI GCATC 3 cut(s) 805, 1068, 1306
SfcI CTRYAG 2 cut(s) 220, 727
Sfr274I CTCGAG 1 cut(s) 1181
SlaI CTCGAG 1 cut(s) 1181
SmlI CTYRAG 2 cut(s) 716, 1181
SmoI CTYRAG 2 cut(s) 716, 1181
Sse9I AATT 4 cut(s) 62, 418, 489, 855
SsiI CCGC 1 cut(s) 757
SspMI CTAG 8 cut(s) 36, 110, 245, 309, 365, 642, 848, 1101
SstI GAGCTC 1 cut(s) 702
StyD4I CCNGG 1 cut(s) 744
StyI CCWWGG 1 cut(s) 1311
TaaI ACNGT 1 cut(s) 202
TaiI ACGT 1 cut(s) 164
TaqI TCGA 7 cut(s) 60, 264, 288, 441, 569, 696, 1182
TasI AATT 4 cut(s) 62, 418, 489, 855
TfiI GAWTC 9 cut(s) 39, 278, 361, 449, 566, 661, 950, 1084, 1222
Tru1I TTAA 2 cut(s) 824, 1175
Tru9I TTAA 2 cut(s) 824, 1175
TseFI GTSAC 2 cut(s) 31, 666
TseI GCWGC 4 cut(s) 222, 803, 806, 866
Tsp45I GTSAC 2 cut(s) 31, 666
TspDTI ATGAA 6 cut(s) 366, 971, 1124, 1161, 1217, 1229
TspGWI ACGGA 1 cut(s) 474
XbaI TCTAGA 1 cut(s) 364
XceI RCATGY 1 cut(s) 1019
XhoI CTCGAG 1 cut(s) 1181
XmnI GAANNNNTTC 2 cut(s) 466, 789
XspI CTAG 8 cut(s) 36, 110, 245, 309, 365, 642, 848, 1101
Zsp2I ATGCAT 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.