Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009742.1

Orthogroup ID

OG0009358

Physical Location & Seq

Genomic Coordinates Forward (+)

79262 .. 81079

Gene Structure 1818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009742.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1662 bp

atgcaactaaatgtacttggtggtcatccattcactatggacaaagagcttctggctgcaaaatcagccaaatttgctgctacactcaaagagaatccgcaggaagatcttgccaacttcctccaaagtgtccctgctactgcagacactcttgagcttgttgcgagattctatcatggctttgaaattcaaatttgcagtcagaatgttgtacagctcatttgtgctgctgactacttggacatgactgaaaaccacagcaaagataatttattacacaaagctatttcatattttcaacaaagaatcctccctagctggtctgaaactattaaggctttccgatccacagaaaaggtatttcaacaatcctggaagcttggattggtacacgaatgtttggattctatcattagaaaggcaaaagctagtccccaacttctgggcgaaccaatcaagaattctactgcaaatgctgatgatagtgacgaggattatgaaggttataagccgaatgcaaggagaaggctcttcgatctcaattggaaaccagaggatctaacgacattgtccctgcagctttatgagctcctcatgcatgcaatgaataagcatggagttccatcagaatatgtggctgcatctctttgtaactacactaagaaatgggttttctctagcagtggagaggaagcactcaagaaaaagtaccaaaaggacatccttgaagcagttgagaggcttttgcctgatgaaataggactccttccatgcacgttgttgtttcaaatgcttcgagttgctatttatttggaagttacctctgactgcagaaatgggattgagatcagaattggaaaacaacttgaccaggcaacagtcaaagacctcttaataccatctcacggctattctaaagtagtgcaatatgatattcaatgtgtgagaaggattgtgaaggttttctatgctaattactcttcttcaaatgtaactgacataactggtctaatagcagtggcagatctcattgaagaattcttagctgaagttgctagtgacatagacttgaagatatctacatttgttggattagcagagatgttggtttcagcatccatgggagtaaaaacaaactcggatggaatatacagggctgttgctatatacttagataagcacagacacttgacagaatccgagcgagaagaagtgtgtcaggtattggatttccaaaagatgtccccccaagcttgtgatcatgcagccaaaaacgaatgcatgccattaaggatggtggtacaggtgttgtttgcggggcaattgcagcttagagacacgatcacgaaggaggtgcagaattcggatgagaaattaataaaagaagaagcagacgaggcgaatgtaccaagggtggatttgtgtgaggggaaaatgagatcagaggtggagaaaatgagcaaaaaggtgatgcagcttgagagagagtgcagtatgatgagaaaagagattgagaatagctctagccttgtggtgaggaaggaaaaacctagcttgtggagagaaatgaagagaaagtttggttgcatcagcagcgctcacgattctaactgccaattgaagaggaaaaagttgcctctgaaaccaaaacgtggactgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

553

Amino Acids

62.82

Weight (kDa)

6.5

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03510 AT5G17580 AT5G17580
fragaria_vesca	FvH4_7g07100
malus_domestica	MD02G1239800.v1.1 MD02G1239900.v1.1 MD07G1076800.v1.1
prunus_persica	Prupe.2G097900_v2.0.a1 Prupe.2G097900_v2.0.a1
pyrus_communis	pycom07g06040
rosa_chinensis	RchiOBHm_Chr1g0337041
rosa_laevigata	RLG00000029309
rosa_multiflora	Rmu_co8265129.1_g000001 Rmu_sc0009742.1_g000014
rosa_roxburghii	Rroxscaffold_4G00315000
rosa_rugosa	Rorug01G0130800
rosa_samantha	Rh1AG151400 Rh1BG120400 Rh1CG142600 Rh1CG250700 Rh1DG158600
rosa_wichuraiana	Rw1G012390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	507
AccB7I	CCANNNNNTGG	2 cut(s)	442, 1652
AciI	CCGC	2 cut(s)	98, 1316
AclWI	GGATC	2 cut(s)	339, 564
AcsI	RAATTY	6 cut(s)	71, 186, 192, 460, 1037, 1360
AcuI	CTGAAG	1 cut(s)	1068
AfaI	GTAC	6 cut(s)	15, 213, 390, 710, 1302, 1407
AfeI	AGCGCT	1 cut(s)	1597
AfiI	CCNNNNNNNGG	3 cut(s)	442, 905, 1652
AjnI	CCWGG	2 cut(s)	371, 870
AjuI	GAANNNNNNNTTGG	4 cut(s)	368, 400, 445, 477
Alw21I	GWGCWC	1 cut(s)	591
Alw26I	GTCTC	1 cut(s)	1329
AlwI	GGATC	2 cut(s)	339, 564
Aor51HI	AGCGCT	1 cut(s)	1597
ApeKI	GCWGC	9 cut(s)	56, 77, 227, 577, 638, 1265, 1327, 1474, 1593
ApoI	RAATTY	6 cut(s)	71, 186, 192, 460, 1037, 1360
ArsI	GACNNNNNNTTYG	2 cut(s)	184, 216
AseI	ATTAAT	1 cut(s)	1376
Asp700I	GAANNNNTTC	1 cut(s)	962
AspLEI	GCGC	1 cut(s)	1598
AsuHPI	GGTGA	2 cut(s)	1480, 1546
BaeI	ACNNNNGTAYC	2 cut(s)	1292, 1325
BanII	GRGCYC	1 cut(s)	591
Bbv12I	GWGCWC	1 cut(s)	591
BbvI	GCAGC	9 cut(s)	43, 64, 214, 589, 625, 1277, 1339, 1486, 1605
BccI	CCATC	4 cut(s)	631, 907, 1136, 1288
BceAI	ACGGC	1 cut(s)	922
BcgI	CGANNNNNNTGC	2 cut(s)	1336, 1370
BciT130I	CCWGG	2 cut(s)	373, 872
BclI	TGATCA	1 cut(s)	1258
BcoDI	GTCTC	1 cut(s)	1329
BfaI	CTAG	6 cut(s)	315, 429, 678, 1056, 1524, 1551
BfmI	CTRYAG	3 cut(s)	141, 575, 829
BfoI	RGCGCY	1 cut(s)	1599
BglII	AGATCT	2 cut(s)	106, 1024
BisI	GCNGC	9 cut(s)	57, 78, 228, 578, 639, 1266, 1328, 1475, 1594
BlsI	GCNGC	9 cut(s)	58, 79, 229, 579, 640, 1267, 1329, 1476, 1595
Bme1390I	CCNGG	2 cut(s)	373, 872
BmrFI	CCNGG	2 cut(s)	373, 872
BmsI	GCATC	4 cut(s)	650, 1124, 1461, 1596
BplI	GAGNNNNNCTC	2 cut(s)	1505, 1537
BpuEI	CTTGAG	3 cut(s)	173, 683, 1499
BsaBI	GATNNNNATC	1 cut(s)	845
BsaJI	CCNNGG	2 cut(s)	1119, 1409
Bsc4I	CCNNNNNNNGG	3 cut(s)	442, 905, 1652
Bse1I	ACTGG	1 cut(s)	1009
Bse3DI	GCAATG	1 cut(s)	609
Bse8I	GATNNNNATC	1 cut(s)	845
BseBI	CCWGG	2 cut(s)	373, 872
BseDI	CCNNGG	2 cut(s)	1119, 1409
BseGI	GGATG	6 cut(s)	25, 720, 1115, 1147, 1299, 1372
BseJI	GATNNNNATC	1 cut(s)	845
BseLI	CCNNNNNNNGG	3 cut(s)	442, 905, 1652
BseMI	GCAATG	1 cut(s)	609
BseNI	ACTGG	1 cut(s)	1009
BseRI	GAGGAG	1 cut(s)	581
BseXI	GCAGC	9 cut(s)	43, 64, 214, 589, 625, 1277, 1339, 1486, 1605
BsgI	GTGCAG	2 cut(s)	1376, 1510
BsiHKAI	GWGCWC	1 cut(s)	591
BslFI	GGGAC	4 cut(s)	116, 417, 556, 1228
BslI	CCNNNNNNNGG	3 cut(s)	442, 905, 1652
BsmAI	GTCTC	1 cut(s)	1329
BsmFI	GGGAC	4 cut(s)	116, 417, 556, 1228
BsmI	GAATGC	2 cut(s)	520, 1283
Bsp1286I	GDGCHC	1 cut(s)	591
Bsp1407I	TGTACA	1 cut(s)	211
Bsp143I	GATC	9 cut(s)	106, 344, 535, 556, 846, 1024, 1258, 1341, 1439
Bsp19I	CCATGG	1 cut(s)	1119
BspACI	CCGC	2 cut(s)	98, 1316
BspMAI	CTGCAG	3 cut(s)	145, 579, 833
BspPI	GGATC	2 cut(s)	339, 564
BspQI	GCTCTTC	1 cut(s)	536
BsrDI	GCAATG	1 cut(s)	609
BsrGI	TGTACA	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	1009
BssECI	CCNNGG	2 cut(s)	1119, 1409
BssMI	GATC	9 cut(s)	106, 344, 535, 556, 846, 1024, 1258, 1341, 1439
BssT1I	CCWWGG	2 cut(s)	1119, 1409
Bst2UI	CCWGG	2 cut(s)	373, 872
Bst4CI	ACNGT	2 cut(s)	880, 1659
Bst6I	CTCTTC	4 cut(s)	536, 985, 1565, 1616
BstAUI	TGTACA	1 cut(s)	211
BstC8I	GCNNGC	2 cut(s)	600, 1283
BstDEI	CTNAG	4 cut(s)	660, 1042, 1171, 1331
BstDSI	CCRYGG	1 cut(s)	1119
BstF5I	GGATG	6 cut(s)	25, 720, 1115, 1147, 1299, 1372
BstH2I	RGCGCY	1 cut(s)	1599
BstHHI	GCGC	1 cut(s)	1598
BstKTI	GATC	9 cut(s)	109, 347, 538, 559, 849, 1027, 1261, 1344, 1442
BstMAI	GTCTC	1 cut(s)	1329
BstMBI	GATC	9 cut(s)	106, 344, 535, 556, 846, 1024, 1258, 1341, 1439
BstMWI	GCNNNNNNNGC	8 cut(s)	65, 74, 586, 595, 1052, 1327, 1397, 1593
BstNI	CCWGG	2 cut(s)	373, 872
BstNSI	RCATGY	2 cut(s)	602, 1285
BstSCI	CCNGG	2 cut(s)	371, 870
BstSFI	CTRYAG	3 cut(s)	141, 575, 829
BstV1I	GCAGC	9 cut(s)	43, 64, 214, 589, 625, 1277, 1339, 1486, 1605
BstX2I	RGATCY	3 cut(s)	106, 556, 1024
BstYI	RGATCY	3 cut(s)	106, 556, 1024
BtgI	CCRYGG	1 cut(s)	1119
BtsCI	GGATG	6 cut(s)	25, 720, 1115, 1147, 1299, 1372
BtsI	GCAGTG	2 cut(s)	688, 1023
BtsIMutI	CAGTG	2 cut(s)	688, 1023
Cac8I	GCNNGC	2 cut(s)	600, 1283
CfoI	GCGC	1 cut(s)	1598
Csp6I	GTAC	6 cut(s)	14, 212, 389, 709, 1301, 1406
CviAII	CATG	9 cut(s)	176, 244, 595, 599, 614, 771, 1120, 1262, 1282
CviQI	GTAC	6 cut(s)	14, 212, 389, 709, 1301, 1406
DdeI	CTNAG	4 cut(s)	660, 1042, 1171, 1331
DpnI	GATC	9 cut(s)	108, 346, 537, 558, 848, 1026, 1260, 1343, 1441
DpnII	GATC	9 cut(s)	106, 344, 535, 556, 846, 1024, 1258, 1341, 1439
Eam1104I	CTCTTC	4 cut(s)	536, 985, 1565, 1616
EarI	CTCTTC	4 cut(s)	536, 985, 1565, 1616
Ecl136II	GAGCTC	1 cut(s)	589
Eco130I	CCWWGG	2 cut(s)	1119, 1409
Eco24I	GRGCYC	1 cut(s)	591
Eco32I	GATATC	1 cut(s)	1077
Eco47III	AGCGCT	1 cut(s)	1597
Eco53kI	GAGCTC	1 cut(s)	589
Eco57I	CTGAAG	1 cut(s)	1068
EcoICRI	GAGCTC	1 cut(s)	589
EcoRI	GAATTC	3 cut(s)	460, 1037, 1360
EcoRII	CCWGG	2 cut(s)	371, 870
EcoRV	GATATC	1 cut(s)	1077
EcoT14I	CCWWGG	2 cut(s)	1119, 1409
EcoT22I	ATGCAT	2 cut(s)	600, 1283
EcoT38I	GRGCYC	1 cut(s)	591
ErhI	CCWWGG	2 cut(s)	1119, 1409
FaeI	CATG	9 cut(s)	179, 247, 598, 602, 617, 774, 1123, 1265, 1285
FaqI	GGGAC	4 cut(s)	116, 417, 556, 1228
FatI	CATG	9 cut(s)	175, 243, 594, 598, 613, 770, 1119, 1261, 1281
FauI	CCCGC	1 cut(s)	1309
FbaI	TGATCA	1 cut(s)	1258
Fnu4HI	GCNGC	9 cut(s)	57, 78, 228, 578, 639, 1266, 1328, 1475, 1594
FokI	GGATG	6 cut(s)	12, 707, 1102, 1154, 1306, 1379
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	9 cut(s)	57, 78, 228, 578, 639, 1266, 1328, 1475, 1594
FspBI	CTAG	6 cut(s)	315, 429, 678, 1056, 1524, 1551
GlaI	GCGC	1 cut(s)	1597
GluI	GCNGC	9 cut(s)	57, 78, 228, 578, 639, 1266, 1328, 1475, 1594
HaeII	RGCGCY	1 cut(s)	1599
HhaI	GCGC	1 cut(s)	1598
Hin1II	CATG	9 cut(s)	179, 247, 598, 602, 617, 774, 1123, 1265, 1285
Hin6I	GCGC	1 cut(s)	1596
HinP1I	GCGC	1 cut(s)	1596
HindIII	AAGCTT	2 cut(s)	377, 1251
HinfI	GANTC	7 cut(s)	94, 168, 306, 404, 762, 1196, 1604
HphI	GGTGA	2 cut(s)	1480, 1546
Hpy166II	GTNNAC	2 cut(s)	391, 1655
Hpy188III	TCNNGA	5 cut(s)	152, 457, 700, 1345, 1601
Hpy8I	GTNNAC	2 cut(s)	391, 1655
HpyAV	CCTTC	7 cut(s)	494, 519, 776, 942, 952, 1342, 1534
HpyCH4III	ACNGT	2 cut(s)	880, 1659
HpyCH4IV	ACGT	2 cut(s)	776, 1651
HpyF10VI	GCNNNNNNNGC	8 cut(s)	65, 74, 586, 595, 1052, 1327, 1397, 1593
HpyF3I	CTNAG	4 cut(s)	660, 1042, 1171, 1331
HpySE526I	ACGT	2 cut(s)	776, 1651
Hsp92II	CATG	9 cut(s)	179, 247, 598, 602, 617, 774, 1123, 1265, 1285
HspAI	GCGC	1 cut(s)	1596
Ksp22I	TGATCA	1 cut(s)	1258
Kzo9I	GATC	9 cut(s)	106, 344, 535, 556, 846, 1024, 1258, 1341, 1439
LguI	GCTCTTC	1 cut(s)	536
LmnI	GCTCC	1 cut(s)	594
Lsp1109I	GCAGC	9 cut(s)	43, 64, 214, 589, 625, 1277, 1339, 1486, 1605
LweI	GCATC	4 cut(s)	650, 1124, 1461, 1596
MaeI	CTAG	6 cut(s)	315, 429, 678, 1056, 1524, 1551
MaeII	ACGT	2 cut(s)	776, 1651
MaeIII	GTNAC	5 cut(s)	485, 650, 817, 991, 1058
MalI	GATC	9 cut(s)	108, 346, 537, 558, 848, 1026, 1260, 1343, 1441
MboI	GATC	9 cut(s)	106, 344, 535, 556, 846, 1024, 1258, 1341, 1439
MfeI	CAATTG	3 cut(s)	541, 1322, 1616
MflI	RGATCY	3 cut(s)	106, 556, 1024
MhlI	GDGCHC	1 cut(s)	591
MlyI	GAGTC	1 cut(s)	756
MmeI	TCCRAC	1 cut(s)	1069
Mph1103I	ATGCAT	2 cut(s)	600, 1283
MroXI	GAANNNNTTC	1 cut(s)	962
MseI	TTAA	4 cut(s)	333, 893, 1289, 1376
MspR9I	CCNGG	2 cut(s)	373, 872
MunI	CAATTG	3 cut(s)	541, 1322, 1616
Mva1269I	GAATGC	2 cut(s)	520, 1283
MvaI	CCWGG	2 cut(s)	373, 872
MwoI	GCNNNNNNNGC	8 cut(s)	65, 74, 586, 595, 1052, 1327, 1397, 1593
NcoI	CCATGG	1 cut(s)	1119
NdeII	GATC	9 cut(s)	106, 344, 535, 556, 846, 1024, 1258, 1341, 1439
NlaIII	CATG	9 cut(s)	179, 247, 598, 602, 617, 774, 1123, 1265, 1285
NmuCI	GTSAC	2 cut(s)	485, 1058
NsiI	ATGCAT	2 cut(s)	600, 1283
NspI	RCATGY	2 cut(s)	602, 1285
PaeI	GCATGC	2 cut(s)	602, 1285
PciSI	GCTCTTC	1 cut(s)	536
PctI	GAATGC	2 cut(s)	520, 1283
PdmI	GAANNNNTTC	1 cut(s)	962
PfeI	GAWTC	6 cut(s)	94, 168, 306, 404, 1196, 1604
PflFI	GACNNNGTC	1 cut(s)	568
PflMI	CCANNNNNTGG	2 cut(s)	442, 1652
PfoI	TCCNGGA	1 cut(s)	371
PkrI	GCNGC	9 cut(s)	58, 79, 229, 579, 640, 1267, 1329, 1476, 1595
PleI	GAGTC	1 cut(s)	756
PpsI	GAGTC	1 cut(s)	756
PshBI	ATTAAT	1 cut(s)	1376
PsiI	TTATAA	1 cut(s)	507
Psp124BI	GAGCTC	1 cut(s)	591
Psp6I	CCWGG	2 cut(s)	371, 870
PspGI	CCWGG	2 cut(s)	371, 870
PstI	CTGCAG	3 cut(s)	145, 579, 833
PsuI	RGATCY	3 cut(s)	106, 556, 1024
PsyI	GACNNNGTC	1 cut(s)	568
RsaI	GTAC	6 cut(s)	15, 213, 390, 710, 1302, 1407
RsaNI	GTAC	6 cut(s)	14, 212, 389, 709, 1301, 1406
SacI	GAGCTC	1 cut(s)	591
SapI	GCTCTTC	1 cut(s)	536
SaqAI	TTAA	4 cut(s)	333, 893, 1289, 1376
SatI	GCNGC	9 cut(s)	57, 78, 228, 578, 639, 1266, 1328, 1475, 1594
Sau3AI	GATC	9 cut(s)	106, 344, 535, 556, 846, 1024, 1258, 1341, 1439
SchI	GAGTC	1 cut(s)	756
ScrFI	CCNGG	2 cut(s)	373, 872
SduI	GDGCHC	1 cut(s)	591
SfaNI	GCATC	4 cut(s)	650, 1124, 1461, 1596
SfcI	CTRYAG	3 cut(s)	141, 575, 829
SmlI	CTYRAG	3 cut(s)	152, 698, 1478
SmoI	CTYRAG	3 cut(s)	152, 698, 1478
SphI	GCATGC	2 cut(s)	602, 1285
SsiI	CCGC	2 cut(s)	98, 1316
SspMI	CTAG	6 cut(s)	315, 429, 678, 1056, 1524, 1551
SstI	GAGCTC	1 cut(s)	591
StyD4I	CCNGG	2 cut(s)	371, 870
StyI	CCWWGG	2 cut(s)	1119, 1409
TaaI	ACNGT	2 cut(s)	880, 1659
TaiI	ACGT	2 cut(s)	779, 1654
TaqI	TCGA	2 cut(s)	534, 796
TatI	WGTACW	2 cut(s)	13, 211
TfiI	GAWTC	6 cut(s)	94, 168, 306, 404, 1196, 1604
Tru1I	TTAA	4 cut(s)	333, 893, 1289, 1376
Tru9I	TTAA	4 cut(s)	333, 893, 1289, 1376
TscAI	CASTG	2 cut(s)	688, 1023
TseFI	GTSAC	2 cut(s)	485, 1058
TseI	GCWGC	9 cut(s)	56, 77, 227, 577, 638, 1265, 1327, 1474, 1593
Tsp45I	GTSAC	2 cut(s)	485, 1058
TspDTI	ATGAA	5 cut(s)	279, 513, 620, 768, 1583
TspRI	CASTG	2 cut(s)	688, 1023
Tth111I	GACNNNGTC	1 cut(s)	568
Van91I	CCANNNNNTGG	2 cut(s)	442, 1652
VspI	ATTAAT	1 cut(s)	1376
XapI	RAATTY	6 cut(s)	71, 186, 192, 460, 1037, 1360
XceI	RCATGY	2 cut(s)	602, 1285
XmnI	GAANNNNTTC	1 cut(s)	962
XspI	CTAG	6 cut(s)	315, 429, 678, 1056, 1524, 1551
Zsp2I	ATGCAT	2 cut(s)	600, 1283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.