Rh1BG120400

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0009358
Physical Location & Seq
Reverse (-)
20492050 .. 20495512
3463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG120400.1

Sequence Viewer

Length: 1419 bp
ATGACTGAAAACCACAGCAAAGATAATTTATTACACAAAGCTATTTCATATTTTCAACAAAGGATCCTCCCTAGCTGGTCTGAAACTATTAAGGCTTTCCGATCCACAGAAAAGGTATTTCAACAATCCTGGAAGCTTGGATTAGTACACGAATGTTTGGATTCTATCATTAGAAAGGCAAAAGCTAGTCCCCAACTTCTGGGCGAACCAATCAAGAATTCTACTGCAAGTGCTGATGATAGTGACGAGGATTATGAAGGTTATAAGCCGAATGCAAGGAGAAGGCTCTTCGATCTCAATTGGAAACCAGAGGATCTAACGACATTGTCCCTGCAGCTTTATGAGCTCCTCATGCATGCAATGAATAAGCATGGAGTTCCATCAGAATATGTGGCTGCATCTCTTTGTAACTACACTAAGAAATGGGTTTTCTCTAGCAGTGGAGAGGAAGCACTCAAGAAAAAGTACCAAAAGGACATCCTTGAAGCAGTTGAGAGGCTTTTGCCTGATGAAATAGGACTCCTTCCATGCACGTTGTTGTTTCAAATGCTTCGAGTTGCTATTTATTTGGAAGTTACCTCTGACTGCAGAAATGGGATTGAGATCAGAATTGGAAAACAACTTGACCAGGCAACAGTCAAAGACCTCTTAATACCATCTCACGGCTATTCTAAAGTAGTGCAATATGATATTCAATGTGTGAGAAGGATTGTGAAGGTTTTCTATGCTAATTACTCTTCTTCAAATGTAACTGACATAACTGGTCTAATAGCAGTGGCAGATCTCATTGAAGAATTCTTAGCTGAAGTTGCTAGTGACATAGACTTGAAGATATCTACATTTGTTGGATTAGCAGAGATGTTGGTTTCAGCATCCATGGGAGTAAAAACAAACTCGGATGGAATATACAGGGCTGTTGCTATATACTTAGATAAGCACAGGCACTTGACAGAATCCGAGCGAGAAGAAGTGTGTCAGGTATTGGATTTCCAAAAGATGTCCCCCCAAGCTTGTGATCATGCAGCCAAAAACGAATGCATGCCATTAAGGATGGTGGTACAGGTGTTGTTTGCGGGGCAATTGCAGCTTAGAGACACGATCACGAAGGAGGTGCAGAGTTCGGATGAGAAATTAATAAAAGAAGAAGCAGACGAGGTGAATGCACCAAGGGTGGATTTGTGTGAGGGGAAAATGAGATCTGAGGTGGAGAAAATGAGCAAAAAGGTGATGCAGCTTGAGAGAGAGTGCAGTATGATGAGAAAAGAGATTGAGAATAGCTCTAGCCTTGTGGTGAGGAAGGAAAAACCTAGCTTGTGGAGAGAAATGAAGAGAAAGTTTGGTTGCATCAGCAGCGCTCACGATTCTAACTGCCAATTGAAGAAGAAAAAGTTGCCTCTGAAACCAAAACGTGGACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

472

Amino Acids

53.83

Weight (kDa)

7.87

Isoelectric Point (pI)

50.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 100 - 338 9e-71 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 264
AccB7I CCANNNNNTGG 2 cut(s) 199, 1409
AciI CCGC 1 cut(s) 1073
AclWI GGATC 4 cut(s) 58, 71, 96, 321
AcsI RAATTY 2 cut(s) 217, 794
AcuI CTGAAG 1 cut(s) 825
AfaI GTAC 3 cut(s) 147, 467, 1059
AfeI AGCGCT 1 cut(s) 1354
AfiI CCNNNNNNNGG 3 cut(s) 199, 662, 1409
AgsI TTSAA 9 cut(s) 56, 122, 485, 545, 695, 744, 791, 829, 1378
AjnI CCWGG 2 cut(s) 128, 627
AjuI GAANNNNNNNTTGG 2 cut(s) 202, 234
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 1 cut(s) 1086
AlwI GGATC 4 cut(s) 58, 71, 96, 321
Aor51HI AGCGCT 1 cut(s) 1354
ApeKI GCWGC 6 cut(s) 334, 395, 1022, 1084, 1231, 1350
ApoI RAATTY 2 cut(s) 217, 794
AseI ATTAAT 1 cut(s) 1133
Asp700I GAANNNNTTC 1 cut(s) 719
AspLEI GCGC 1 cut(s) 1355
AsuHPI GGTGA 3 cut(s) 1168, 1237, 1303
BaeI ACNNNNGTAYC 2 cut(s) 1049, 1082
BamHI GGATCC 1 cut(s) 63
BanII GRGCYC 1 cut(s) 348
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 6 cut(s) 346, 382, 1034, 1096, 1243, 1362
BccI CCATC 4 cut(s) 388, 664, 893, 1045
BceAI ACGGC 1 cut(s) 679
BcgI CGANNNNNNTGC 4 cut(s) 1093, 1127, 1142, 1176
BciT130I CCWGG 2 cut(s) 130, 629
BclI TGATCA 1 cut(s) 1015
BcoDI GTCTC 1 cut(s) 1086
BfaI CTAG 6 cut(s) 72, 186, 435, 813, 1281, 1308
BfmI CTRYAG 2 cut(s) 332, 586
BfoI RGCGCY 1 cut(s) 1356
BglII AGATCT 2 cut(s) 781, 1196
BisI GCNGC 6 cut(s) 335, 396, 1023, 1085, 1232, 1351
BlsI GCNGC 6 cut(s) 336, 397, 1024, 1086, 1233, 1352
Bme1390I CCNGG 2 cut(s) 130, 629
BmiI GGNNCC 1 cut(s) 65
BmrFI CCNGG 2 cut(s) 130, 629
BmsI GCATC 4 cut(s) 407, 881, 1218, 1353
BplI GAGNNNNNCTC 2 cut(s) 1262, 1294
BpuEI CTTGAG 2 cut(s) 440, 1256
BsaBI GATNNNNATC 1 cut(s) 602
BsaJI CCNNGG 2 cut(s) 876, 1166
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 662, 1409
Bse1I ACTGG 1 cut(s) 766
Bse3DI GCAATG 1 cut(s) 366
Bse8I GATNNNNATC 1 cut(s) 602
BseBI CCWGG 2 cut(s) 130, 629
BseDI CCNNGG 2 cut(s) 876, 1166
BseGI GGATG 5 cut(s) 477, 872, 904, 1056, 1129
BseJI GATNNNNATC 1 cut(s) 602
BseLI CCNNNNNNNGG 3 cut(s) 199, 662, 1409
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 1 cut(s) 1191
BseNI ACTGG 1 cut(s) 766
BseRI GAGGAG 1 cut(s) 338
BseXI GCAGC 6 cut(s) 346, 382, 1034, 1096, 1243, 1362
BsgI GTGCAG 2 cut(s) 1133, 1267
BsiHKAI GWGCWC 1 cut(s) 348
BslFI GGGAC 3 cut(s) 174, 313, 985
BslI CCNNNNNNNGG 3 cut(s) 199, 662, 1409
BsmAI GTCTC 1 cut(s) 1086
BsmFI GGGAC 3 cut(s) 174, 313, 985
BsmI GAATGC 3 cut(s) 277, 1040, 1165
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 9 cut(s) 63, 101, 292, 313, 603, 781, 1015, 1098, 1196
Bsp19I CCATGG 1 cut(s) 876
BspACI CCGC 1 cut(s) 1073
BspCNI CTCAG 1 cut(s) 1192
BspLI GGNNCC 1 cut(s) 65
BspMAI CTGCAG 2 cut(s) 336, 590
BspPI GGATC 4 cut(s) 58, 71, 96, 321
BspQI GCTCTTC 1 cut(s) 293
BsrDI GCAATG 1 cut(s) 366
BsrI ACTGG 1 cut(s) 766
BssECI CCNNGG 2 cut(s) 876, 1166
BssMI GATC 9 cut(s) 63, 101, 292, 313, 603, 781, 1015, 1098, 1196
BssT1I CCWWGG 2 cut(s) 876, 1166
Bst2UI CCWGG 2 cut(s) 130, 629
Bst4CI ACNGT 1 cut(s) 637
Bst6I CTCTTC 3 cut(s) 293, 742, 1322
BstC8I GCNNGC 2 cut(s) 357, 1040
BstDEI CTNAG 5 cut(s) 417, 799, 928, 1088, 1200
BstDSI CCRYGG 1 cut(s) 876
BstF5I GGATG 5 cut(s) 477, 872, 904, 1056, 1129
BstH2I RGCGCY 1 cut(s) 1356
BstHHI GCGC 1 cut(s) 1355
BstKTI GATC 9 cut(s) 66, 104, 295, 316, 606, 784, 1018, 1101, 1199
BstMAI GTCTC 1 cut(s) 1086
BstMBI GATC 9 cut(s) 63, 101, 292, 313, 603, 781, 1015, 1098, 1196
BstMWI GCNNNNNNNGC 5 cut(s) 343, 352, 809, 1084, 1350
BstNI CCWGG 2 cut(s) 130, 629
BstNSI RCATGY 2 cut(s) 359, 1042
BstSCI CCNGG 2 cut(s) 128, 627
BstSFI CTRYAG 2 cut(s) 332, 586
BstV1I GCAGC 6 cut(s) 346, 382, 1034, 1096, 1243, 1362
BstX2I RGATCY 4 cut(s) 63, 313, 781, 1196
BstYI RGATCY 4 cut(s) 63, 313, 781, 1196
BtgI CCRYGG 1 cut(s) 876
BtsCI GGATG 5 cut(s) 477, 872, 904, 1056, 1129
BtsI GCAGTG 2 cut(s) 445, 780
BtsIMutI CAGTG 2 cut(s) 445, 780
Cac8I GCNNGC 2 cut(s) 357, 1040
CfoI GCGC 1 cut(s) 1355
Csp6I GTAC 3 cut(s) 146, 466, 1058
CviAII CATG 7 cut(s) 352, 356, 371, 528, 877, 1019, 1039
CviQI GTAC 3 cut(s) 146, 466, 1058
DdeI CTNAG 5 cut(s) 417, 799, 928, 1088, 1200
DpnI GATC 9 cut(s) 65, 103, 294, 315, 605, 783, 1017, 1100, 1198
DpnII GATC 9 cut(s) 63, 101, 292, 313, 603, 781, 1015, 1098, 1196
Eam1104I CTCTTC 3 cut(s) 293, 742, 1322
EarI CTCTTC 3 cut(s) 293, 742, 1322
Ecl136II GAGCTC 1 cut(s) 346
Eco130I CCWWGG 2 cut(s) 876, 1166
Eco24I GRGCYC 1 cut(s) 348
Eco32I GATATC 1 cut(s) 834
Eco47III AGCGCT 1 cut(s) 1354
Eco53kI GAGCTC 1 cut(s) 346
Eco57I CTGAAG 1 cut(s) 825
EcoICRI GAGCTC 1 cut(s) 346
EcoRI GAATTC 2 cut(s) 217, 794
EcoRII CCWGG 2 cut(s) 128, 627
EcoRV GATATC 1 cut(s) 834
EcoT14I CCWWGG 2 cut(s) 876, 1166
EcoT22I ATGCAT 2 cut(s) 357, 1040
EcoT38I GRGCYC 1 cut(s) 348
ErhI CCWWGG 2 cut(s) 876, 1166
FaeI CATG 7 cut(s) 355, 359, 374, 531, 880, 1022, 1042
FaqI GGGAC 3 cut(s) 174, 313, 985
FatI CATG 7 cut(s) 351, 355, 370, 527, 876, 1018, 1038
FauI CCCGC 1 cut(s) 1066
FbaI TGATCA 1 cut(s) 1015
Fnu4HI GCNGC 6 cut(s) 335, 396, 1023, 1085, 1232, 1351
FokI GGATG 5 cut(s) 464, 859, 911, 1063, 1136
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 6 cut(s) 335, 396, 1023, 1085, 1232, 1351
FspBI CTAG 6 cut(s) 72, 186, 435, 813, 1281, 1308
GlaI GCGC 1 cut(s) 1354
GluI GCNGC 6 cut(s) 335, 396, 1023, 1085, 1232, 1351
HaeII RGCGCY 1 cut(s) 1356
HhaI GCGC 1 cut(s) 1355
Hin1II CATG 7 cut(s) 355, 359, 374, 531, 880, 1022, 1042
Hin6I GCGC 1 cut(s) 1353
HinP1I GCGC 1 cut(s) 1353
HindIII AAGCTT 2 cut(s) 134, 1008
HinfI GANTC 4 cut(s) 161, 519, 953, 1361
HphI GGTGA 3 cut(s) 1168, 1237, 1303
Hpy166II GTNNAC 2 cut(s) 148, 1412
Hpy188III TCNNGA 4 cut(s) 214, 457, 1102, 1358
Hpy8I GTNNAC 2 cut(s) 148, 1412
HpyAV CCTTC 7 cut(s) 251, 276, 533, 699, 709, 1099, 1291
HpyCH4III ACNGT 1 cut(s) 637
HpyCH4IV ACGT 2 cut(s) 533, 1408
HpyF10VI GCNNNNNNNGC 5 cut(s) 343, 352, 809, 1084, 1350
HpyF3I CTNAG 5 cut(s) 417, 799, 928, 1088, 1200
HpySE526I ACGT 2 cut(s) 533, 1408
Hsp92II CATG 7 cut(s) 355, 359, 374, 531, 880, 1022, 1042
HspAI GCGC 1 cut(s) 1353
Ksp22I TGATCA 1 cut(s) 1015
Kzo9I GATC 9 cut(s) 63, 101, 292, 313, 603, 781, 1015, 1098, 1196
LguI GCTCTTC 1 cut(s) 293
LmnI GCTCC 1 cut(s) 351
Lsp1109I GCAGC 6 cut(s) 346, 382, 1034, 1096, 1243, 1362
LweI GCATC 4 cut(s) 407, 881, 1218, 1353
MaeI CTAG 6 cut(s) 72, 186, 435, 813, 1281, 1308
MaeII ACGT 2 cut(s) 533, 1408
MaeIII GTNAC 5 cut(s) 242, 407, 574, 748, 815
MalI GATC 9 cut(s) 65, 103, 294, 315, 605, 783, 1017, 1100, 1198
MboI GATC 9 cut(s) 63, 101, 292, 313, 603, 781, 1015, 1098, 1196
MfeI CAATTG 3 cut(s) 298, 1079, 1373
MflI RGATCY 4 cut(s) 63, 313, 781, 1196
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 9 cut(s) 25, 217, 298, 609, 730, 794, 1079, 1130, 1373
MlyI GAGTC 1 cut(s) 513
MmeI TCCRAC 1 cut(s) 826
Mph1103I ATGCAT 2 cut(s) 357, 1040
MroXI GAANNNNTTC 1 cut(s) 719
MseI TTAA 4 cut(s) 90, 650, 1046, 1133
MspR9I CCNGG 2 cut(s) 130, 629
MunI CAATTG 3 cut(s) 298, 1079, 1373
Mva1269I GAATGC 3 cut(s) 277, 1040, 1165
MvaI CCWGG 2 cut(s) 130, 629
MwoI GCNNNNNNNGC 5 cut(s) 343, 352, 809, 1084, 1350
NcoI CCATGG 1 cut(s) 876
NdeII GATC 9 cut(s) 63, 101, 292, 313, 603, 781, 1015, 1098, 1196
NlaIII CATG 7 cut(s) 355, 359, 374, 531, 880, 1022, 1042
NlaIV GGNNCC 1 cut(s) 65
NmuCI GTSAC 2 cut(s) 242, 815
NsiI ATGCAT 2 cut(s) 357, 1040
NspI RCATGY 2 cut(s) 359, 1042
PaeI GCATGC 2 cut(s) 359, 1042
PciSI GCTCTTC 1 cut(s) 293
PctI GAATGC 3 cut(s) 277, 1040, 1165
PdmI GAANNNNTTC 1 cut(s) 719
PfeI GAWTC 3 cut(s) 161, 953, 1361
PflFI GACNNNGTC 1 cut(s) 325
PflMI CCANNNNNTGG 2 cut(s) 199, 1409
PfoI TCCNGGA 1 cut(s) 128
PkrI GCNGC 6 cut(s) 336, 397, 1024, 1086, 1233, 1352
PleI GAGTC 1 cut(s) 513
PpsI GAGTC 1 cut(s) 513
PshBI ATTAAT 1 cut(s) 1133
PsiI TTATAA 1 cut(s) 264
Psp124BI GAGCTC 1 cut(s) 348
Psp6I CCWGG 2 cut(s) 128, 627
PspGI CCWGG 2 cut(s) 128, 627
PspN4I GGNNCC 1 cut(s) 65
PstI CTGCAG 2 cut(s) 336, 590
PsuI RGATCY 4 cut(s) 63, 313, 781, 1196
PsyI GACNNNGTC 1 cut(s) 325
RsaI GTAC 3 cut(s) 147, 467, 1059
RsaNI GTAC 3 cut(s) 146, 466, 1058
SacI GAGCTC 1 cut(s) 348
SapI GCTCTTC 1 cut(s) 293
SaqAI TTAA 4 cut(s) 90, 650, 1046, 1133
SatI GCNGC 6 cut(s) 335, 396, 1023, 1085, 1232, 1351
Sau3AI GATC 9 cut(s) 63, 101, 292, 313, 603, 781, 1015, 1098, 1196
SchI GAGTC 1 cut(s) 513
ScrFI CCNGG 2 cut(s) 130, 629
SduI GDGCHC 1 cut(s) 348
SfaNI GCATC 4 cut(s) 407, 881, 1218, 1353
SfcI CTRYAG 2 cut(s) 332, 586
SmlI CTYRAG 2 cut(s) 455, 1235
SmoI CTYRAG 2 cut(s) 455, 1235
SphI GCATGC 2 cut(s) 359, 1042
Sse9I AATT 9 cut(s) 25, 217, 298, 609, 730, 794, 1079, 1130, 1373
SsiI CCGC 1 cut(s) 1073
SspMI CTAG 6 cut(s) 72, 186, 435, 813, 1281, 1308
SstI GAGCTC 1 cut(s) 348
StyD4I CCNGG 2 cut(s) 128, 627
StyI CCWWGG 2 cut(s) 876, 1166
TaaI ACNGT 1 cut(s) 637
TaiI ACGT 2 cut(s) 536, 1411
TaqI TCGA 2 cut(s) 291, 553
TasI AATT 9 cut(s) 25, 217, 298, 609, 730, 794, 1079, 1130, 1373
TatI WGTACW 1 cut(s) 145
TfiI GAWTC 3 cut(s) 161, 953, 1361
Tru1I TTAA 4 cut(s) 90, 650, 1046, 1133
Tru9I TTAA 4 cut(s) 90, 650, 1046, 1133
TscAI CASTG 2 cut(s) 445, 780
TseFI GTSAC 2 cut(s) 242, 815
TseI GCWGC 6 cut(s) 334, 395, 1022, 1084, 1231, 1350
Tsp45I GTSAC 2 cut(s) 242, 815
TspDTI ATGAA 5 cut(s) 36, 270, 377, 525, 1340
TspRI CASTG 2 cut(s) 445, 780
Tth111I GACNNNGTC 1 cut(s) 325
Van91I CCANNNNNTGG 2 cut(s) 199, 1409
VspI ATTAAT 1 cut(s) 1133
XapI RAATTY 2 cut(s) 217, 794
XceI RCATGY 2 cut(s) 359, 1042
XmnI GAANNNNTTC 1 cut(s) 719
XspI CTAG 6 cut(s) 72, 186, 435, 813, 1281, 1308
Zsp2I ATGCAT 2 cut(s) 357, 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.