Prupe.2G098000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015249
Physical Location & Seq
Reverse (-)
15330833 .. 15331354
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G098000.1

Sequence Viewer

Length: 522 bp
ATGGAGCAAAGAAAAGGAGATGCTAGAATCTCTCTCATCTCCGCAGTCTTCTTCTTCTGCATTATCGCCGGTGGAGTGTTTCTTTTCCTTTACATGCTTCTACCTGAAGAAAAATCCCACCCGTGGTATCCCCTTGTTGGCATGGTACTTGTGGCAATTCCATGGGCCTTTTGGCTCTTCACATGTGTCTACAGATGCTGTAAGCCCGAAGGCACGCAGACTGCAGACAGCGACCATTATGCCAAGGCAGGAAGCAGCCGGGCAGCCACCATCCCGAACACGAGTGGCGTATTCACAGCTGGCAATGCATCAGCTGCAGAGTCCCCTGTGCATTCCCCTGATGGTGAACGCAAGGTGCAGTTTGCAGGGGTGGTTGTGATGGGGGATGAAGATCAAGGTGGTCGTGGAGGGCAGAAAGGAAACGAAAACCATCATCAAACCATAGATATGGAAAATCATAATGGGATTAATGATTCGGTTGGCTCTGCAGATAGTGAAATGCCATTGAGATTGATGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

18.77

Weight (kDa)

5.43

Isoelectric Point (pI)

33.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17590
fragaria_vesca FvH4_7g07110
malus_domestica MD02G1239600.v1.1 MD07G1077000.v1.1
prunus_persica Prupe.2G098000_v2.0.a1
pyrus_communis pycom02g20520 pycom07g06050
rosa_chinensis RchiOBHm_Chr1g0337051
rosa_laevigata RLG00000029308
rosa_multiflora Rmu_sc0040337.1_g000001
rosa_roxburghii Rroxscaffold_4G00314990
rosa_rugosa Rorug01G0130800
rosa_samantha Rh1AG151500 Rh1BG120300 Rh1CG142700 Rh1DG158700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 189
AciI CCGC 1 cut(s) 42
AcuI CTGAAG 1 cut(s) 126
AfaI GTAC 1 cut(s) 147
AfiI CCNNNNNNNGG 2 cut(s) 123, 137
AflIII ACRYGT 1 cut(s) 182
AluBI AGCT 2 cut(s) 299, 314
AluI AGCT 2 cut(s) 299, 314
AlwNI CAGNNNCTG 1 cut(s) 198
AoxI GGCC 1 cut(s) 165
ApeKI GCWGC 3 cut(s) 255, 263, 314
AseI ATTAAT 1 cut(s) 468
AspS9I GGNCC 1 cut(s) 165
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 356
BauI CACGAG 1 cut(s) 280
BbsI GAAGAC 1 cut(s) 40
BbvI GCAGC 3 cut(s) 267, 275, 301
BccI CCATC 5 cut(s) 278, 335, 373, 438, 508
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BciVI GTATCC 1 cut(s) 138
BcnI CCSGG 1 cut(s) 260
BfaI CTAG 1 cut(s) 24
BfmI CTRYAG 4 cut(s) 190, 222, 315, 486
BfuI GTATCC 1 cut(s) 138
BisI GCNGC 3 cut(s) 256, 264, 315
BlsI GCNGC 3 cut(s) 257, 265, 316
Bme1390I CCNGG 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 260
BmsI GCATC 3 cut(s) 10, 185, 317
BpiI GAAGAC 1 cut(s) 40
BpuMI CCSGG 1 cut(s) 260
BsaBI GATNNNNATC 1 cut(s) 390
BsaJI CCNNGG 3 cut(s) 122, 161, 243
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 137
Bse118I RCCGGY 1 cut(s) 68
Bse3DI GCAATG 1 cut(s) 310
Bse8I GATNNNNATC 1 cut(s) 390
BseDI CCNNGG 3 cut(s) 122, 161, 243
BseGI GGATG 2 cut(s) 270, 391
BseJI GATNNNNATC 1 cut(s) 390
BseLI CCNNNNNNNGG 2 cut(s) 123, 137
BseMI GCAATG 1 cut(s) 310
BseXI GCAGC 3 cut(s) 267, 275, 301
BsgI GTGCAG 1 cut(s) 377
BshFI GGCC 1 cut(s) 167
BsiSI CCGG 2 cut(s) 69, 259
BslFI GGGAC 1 cut(s) 307
BslI CCNNNNNNNGG 2 cut(s) 123, 137
BsmFI GGGAC 1 cut(s) 307
BsmI GAATGC 1 cut(s) 331
BsnI GGCC 1 cut(s) 167
Bsp143I GATC 1 cut(s) 391
Bsp19I CCATGG 1 cut(s) 161
BspACI CCGC 1 cut(s) 42
BspANI GGCC 1 cut(s) 167
BspMAI CTGCAG 3 cut(s) 226, 319, 490
BspQI GCTCTTC 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 310
BsrFI RCCGGY 1 cut(s) 68
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 3 cut(s) 122, 161, 243
BssMI GATC 1 cut(s) 391
BssSI CACGAG 1 cut(s) 280
BssT1I CCWWGG 2 cut(s) 161, 243
Bst2BI CACGAG 1 cut(s) 280
Bst6I CTCTTC 1 cut(s) 182
BstAPI GCANNNNNTGC 1 cut(s) 314
BstC8I GCNNGC 2 cut(s) 215, 301
BstDSI CCRYGG 2 cut(s) 122, 161
BstF5I GGATG 2 cut(s) 270, 391
BstKTI GATC 1 cut(s) 394
BstMBI GATC 1 cut(s) 391
BstMWI GCNNNNNNNGC 2 cut(s) 305, 314
BstNSI RCATGY 2 cut(s) 97, 186
BstSCI CCNGG 1 cut(s) 258
BstSFI CTRYAG 4 cut(s) 190, 222, 315, 486
BstV1I GCAGC 3 cut(s) 267, 275, 301
BstV2I GAAGAC 1 cut(s) 40
BstXI CCANNNNNNTGG 1 cut(s) 448
BsuI GTATCC 1 cut(s) 138
BsuRI GGCC 1 cut(s) 167
BtgI CCRYGG 2 cut(s) 122, 161
BtsCI GGATG 2 cut(s) 270, 391
Cac8I GCNNGC 2 cut(s) 215, 301
CaiI CAGNNNCTG 1 cut(s) 198
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 165
Csp6I GTAC 1 cut(s) 146
CviAII CATG 4 cut(s) 94, 142, 162, 183
CviJI RGCY 8 cut(s) 167, 175, 205, 258, 266, 299, 314, 483
CviKI_1 RGCY 8 cut(s) 167, 175, 205, 258, 266, 299, 314, 483
CviQI GTAC 1 cut(s) 146
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Eco130I CCWWGG 2 cut(s) 161, 243
Eco57I CTGAAG 1 cut(s) 126
EcoT14I CCWWGG 2 cut(s) 161, 243
EcoT22I ATGCAT 1 cut(s) 310
ErhI CCWWGG 2 cut(s) 161, 243
FaeI CATG 4 cut(s) 97, 145, 165, 186
FaiI YATR 8 cut(s) 95, 143, 163, 184, 240, 443, 449, 459
FaqI GGGAC 1 cut(s) 307
FatI CATG 4 cut(s) 93, 141, 161, 182
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 3 cut(s) 256, 264, 315
FokI GGATG 2 cut(s) 257, 398
Fsp4HI GCNGC 3 cut(s) 256, 264, 315
FspBI CTAG 1 cut(s) 24
GluI GCNGC 3 cut(s) 256, 264, 315
HaeIII GGCC 1 cut(s) 167
HapII CCGG 2 cut(s) 69, 259
Hin1II CATG 4 cut(s) 97, 145, 165, 186
HinfI GANTC 3 cut(s) 27, 320, 473
HpaII CCGG 2 cut(s) 69, 259
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 2 cut(s) 190, 347
Hpy188III TCNNGA 1 cut(s) 274
Hpy8I GTNNAC 2 cut(s) 190, 347
HpyAV CCTTC 1 cut(s) 203
HpyCH4V TGCA 8 cut(s) 60, 224, 308, 317, 331, 358, 365, 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 314
Hsp92II CATG 4 cut(s) 97, 145, 165, 186
Kzo9I GATC 1 cut(s) 391
LguI GCTCTTC 1 cut(s) 182
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 8 cut(s) 82, 117, 234, 272, 285, 339, 351, 351
Lsp1109I GCAGC 3 cut(s) 267, 275, 301
LweI GCATC 3 cut(s) 10, 185, 317
MaeI CTAG 1 cut(s) 24
MalI GATC 1 cut(s) 393
MboI GATC 1 cut(s) 391
MboII GAAGA 6 cut(s) 40, 43, 46, 119, 169, 401
MluCI AATT 1 cut(s) 156
MlyI GAGTC 1 cut(s) 329
MnlI CCTC 1 cut(s) 401
Mph1103I ATGCAT 1 cut(s) 310
MseI TTAA 1 cut(s) 468
MslI CAYNNNNRTG 1 cut(s) 446
MspA1I CMGCKG 2 cut(s) 299, 314
MspI CCGG 2 cut(s) 69, 259
MspR9I CCNGG 1 cut(s) 260
Mva1269I GAATGC 1 cut(s) 331
MwoI GCNNNNNNNGC 2 cut(s) 305, 314
NciI CCSGG 1 cut(s) 260
NcoI CCATGG 1 cut(s) 161
NdeII GATC 1 cut(s) 391
NlaIII CATG 4 cut(s) 97, 145, 165, 186
NsiI ATGCAT 1 cut(s) 310
NspI RCATGY 2 cut(s) 97, 186
PciI ACATGT 1 cut(s) 182
PciSI GCTCTTC 1 cut(s) 182
PctI GAATGC 1 cut(s) 331
PfeI GAWTC 2 cut(s) 27, 473
PkrI GCNGC 3 cut(s) 257, 265, 316
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
PscI ACATGT 1 cut(s) 182
PshBI ATTAAT 1 cut(s) 468
PspPI GGNCC 1 cut(s) 165
PstI CTGCAG 3 cut(s) 226, 319, 490
PstNI CAGNNNCTG 1 cut(s) 198
PvuII CAGCTG 2 cut(s) 299, 314
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
RseI CAYNNNNRTG 1 cut(s) 446
SapI GCTCTTC 1 cut(s) 182
SaqAI TTAA 1 cut(s) 468
SatI GCNGC 3 cut(s) 256, 264, 315
Sau3AI GATC 1 cut(s) 391
Sau96I GGNCC 1 cut(s) 165
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 1 cut(s) 260
SetI ASST 5 cut(s) 106, 301, 316, 357, 400
SfaNI GCATC 3 cut(s) 10, 185, 317
SfcI CTRYAG 4 cut(s) 190, 222, 315, 486
SgrAI CRCCGGYG 1 cut(s) 68
SmiMI CAYNNNNRTG 1 cut(s) 446
Sse9I AATT 1 cut(s) 156
SsiI CCGC 1 cut(s) 42
SspMI CTAG 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 258
StyI CCWWGG 2 cut(s) 161, 243
TasI AATT 1 cut(s) 156
TfiI GAWTC 2 cut(s) 27, 473
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TseI GCWGC 3 cut(s) 255, 263, 314
TspDTI ATGAA 1 cut(s) 402
VspI ATTAAT 1 cut(s) 468
XceI RCATGY 2 cut(s) 97, 186
XcmI CCANNNNNNNNNTGG 1 cut(s) 168
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 1 cut(s) 24
Zsp2I ATGCAT 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.