AT5G17620

Plant nuclear matrix protein 1 (NMP1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003865
Physical Location & Seq
Reverse (-)
5805708 .. 5808619
2912 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17620.1

Sequence Viewer

Length: 990 bp
ATGGCGGCGAAGCAAATGGAAGAGATACAGAAGAAGCTACGGCTGCTAAGTTACCCTAGGGCAAATGCTCCAGCTCAGTCTCTCCTCTTCGCCGGGATGGAACGTTATGCTCTTCTCGAATGGCTCTTTTTCAAGTTATTAGGTGATAAATCACCTTTCTCACAGCAAAATCTCCAAGGAGATGCTGGAGTTCGTGATGAAGAAACTGTTCGTATTCAATATTTGGCAGAGATTGCAAAGTTTTTGGGGATTACACCAACTGTAGACATTGAAGCCATTCAAGGACATGGAACCTATGAAGATCGGATGGAAATGCTTCGCAATATTGTTGATTTAGTGGAGGCGAGCCTCTTCTCAGATAATCAAGAATGGAGTATTGATGAGCAAGTTGCCAAAGATATTCAGCTCATAGATGCTATTGCAGAGAGACAGTCTCTTATATTTTCTGAGGAATGCAAACTGTTCCCTGCTGATGTGCAGATCCAGTCGATATATCCATTACCAGATGTTTCAGAACTGGAGACAAAACTTTCAGAACAGGCCAAGATTCTCTCTAATCTTCAACAGAAAGTCGATGACTTGGCAGCAAAGCATGCTTACAACCCAGATGAAGAATATACTGAAGTGGAATCTCAACTAAGGGCTCGTTTAGAATCGTTTCTTGAAACAGCTAGGGCATTCAATACAATCTACACAAAGGAAATTCGTCCATGGACGCATATGATGGAAGTGCCTCAGCTTCATGGTTTTGGTCCTGCTGCAAACCGTTTACTAGAAGCATATAATATGCTTTTAAAGTTCCTAGGGAACTTGAAGAACCTAAGAGACTCACATGCAGCACTTTCGATTGGATCCTCGGGGACAGTTGCTGGAGAGCCATCCTCTGTAACCAGAATCGTATCCGACTGTGAAGCTGCATTAACTGTTCTCAATCGAGATCTTGGAATCCTCTCGGCTTCTATTGCTCGTGAGCAAGGTGAGCGTCTTTAA

Protein Analysis

329

Amino Acids

37.01

Weight (kDa)

4.82

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_NMP1 PF06694 6 - 324 8.9e-187 Plant nuclear matrix protein 1 (NMP1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 264
AciI CCGC 1 cut(s) 5
AclI AACGTT 1 cut(s) 103
AclWI GGATC 3 cut(s) 475, 846, 859
AcsI RAATTY 1 cut(s) 702
AcuI CTGAAG 1 cut(s) 642
AgsI TTSAA 8 cut(s) 133, 218, 272, 281, 563, 665, 682, 814
AluBI AGCT 6 cut(s) 37, 74, 406, 671, 739, 914
AluI AGCT 6 cut(s) 37, 74, 406, 671, 739, 914
Alw26I GTCTC 5 cut(s) 84, 421, 438, 515, 819
AlwI GGATC 3 cut(s) 475, 846, 859
AlwNI CAGNNNCTG 1 cut(s) 869
Ama87I CYCGRG 1 cut(s) 856
AoxI GGCC 1 cut(s) 540
ApeKI GCWGC 5 cut(s) 43, 584, 758, 836, 914
ApoI RAATTY 1 cut(s) 702
Asp700I GAANNNNTTC 4 cut(s) 207, 276, 315, 657
AspA2I CCTAGG 2 cut(s) 56, 802
AspS9I GGNCC 1 cut(s) 752
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 3 cut(s) 144, 155, 989
AvaI CYCGRG 1 cut(s) 856
AvaII GGWCC 1 cut(s) 752
AvrII CCTAGG 2 cut(s) 56, 802
BamHI GGATCC 1 cut(s) 851
BanII GRGCYC 1 cut(s) 646
BauI CACGAG 1 cut(s) 966
BbvCI CCTCAGC 1 cut(s) 735
BbvI GCAGC 5 cut(s) 30, 596, 745, 848, 901
BccI CCATC 4 cut(s) 91, 301, 718, 886
BceAI ACGGC 1 cut(s) 56
BcgI CGANNNNNNTGC 2 cut(s) 825, 859
BciVI GTATCC 1 cut(s) 910
BcnI CCSGG 1 cut(s) 94
BcoDI GTCTC 5 cut(s) 84, 421, 438, 515, 819
BfaI CTAG 4 cut(s) 57, 672, 773, 803
BfmI CTRYAG 1 cut(s) 261
BfuI GTATCC 1 cut(s) 910
BglII AGATCT 1 cut(s) 937
BisI GCNGC 6 cut(s) 6, 44, 585, 759, 837, 915
BlnI CCTAGG 2 cut(s) 56, 802
BlsI GCNGC 6 cut(s) 7, 45, 586, 760, 838, 916
Bme1390I CCNGG 1 cut(s) 94
Bme18I GGWCC 1 cut(s) 752
BmeT110I CYCGRG 1 cut(s) 856
BmgT120I GGNCC 1 cut(s) 752
BmiI GGNNCC 2 cut(s) 292, 853
BmrFI CCNGG 1 cut(s) 94
BmsI GCATC 2 cut(s) 172, 403
BplI GAGNNNNNCTC 4 cut(s) 418, 450, 866, 898
BpmI CTGGAG 4 cut(s) 54, 207, 539, 891
Bpu10I CCTNAGC 1 cut(s) 735
BpuMI CCSGG 1 cut(s) 94
BsaJI CCNNGG 5 cut(s) 56, 175, 710, 802, 855
Bse1I ACTGG 2 cut(s) 484, 522
BseDI CCNNGG 5 cut(s) 56, 175, 710, 802, 855
BseGI GGATG 3 cut(s) 102, 312, 878
BseMII CTCAG 4 cut(s) 89, 369, 438, 749
BseNI ACTGG 2 cut(s) 484, 522
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 5 cut(s) 30, 596, 745, 848, 901
BsgI GTGCAG 1 cut(s) 497
BshFI GGCC 1 cut(s) 542
BsiHKCI CYCGRG 1 cut(s) 856
BsiSI CCGG 1 cut(s) 93
BslFI GGGAC 1 cut(s) 874
BsmAI GTCTC 5 cut(s) 84, 421, 438, 515, 819
BsmFI GGGAC 1 cut(s) 874
BsmI GAATGC 2 cut(s) 458, 677
BsnI GGCC 1 cut(s) 542
BsoBI CYCGRG 1 cut(s) 856
Bsp1286I GDGCHC 1 cut(s) 646
Bsp143I GATC 4 cut(s) 301, 480, 851, 937
Bsp19I CCATGG 1 cut(s) 710
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 542
BspCNI CTCAG 4 cut(s) 88, 368, 439, 748
BspLI GGNNCC 2 cut(s) 292, 853
BspPI GGATC 3 cut(s) 475, 846, 859
BspQI GCTCTTC 1 cut(s) 117
BsrI ACTGG 2 cut(s) 484, 522
BssECI CCNNGG 5 cut(s) 56, 175, 710, 802, 855
BssMI GATC 4 cut(s) 301, 480, 851, 937
BssSI CACGAG 1 cut(s) 966
BssT1I CCWWGG 4 cut(s) 56, 175, 710, 802
Bst2BI CACGAG 1 cut(s) 966
Bst4CI ACNGT 8 cut(s) 208, 262, 432, 462, 767, 865, 908, 925
Bst6I CTCTTC 4 cut(s) 15, 92, 117, 356
BstAPI GCANNNNNTGC 2 cut(s) 233, 593
BstC8I GCNNGC 2 cut(s) 346, 594
BstDEI CTNAG 7 cut(s) 47, 75, 355, 447, 638, 735, 821
BstDSI CCRYGG 1 cut(s) 710
BstF5I GGATG 3 cut(s) 102, 312, 878
BstKTI GATC 4 cut(s) 304, 483, 854, 940
BstMAI GTCTC 5 cut(s) 84, 421, 438, 515, 819
BstMBI GATC 4 cut(s) 301, 480, 851, 937
BstMWI GCNNNNNNNGC 5 cut(s) 43, 233, 593, 962, 979
BstNSI RCATGY 2 cut(s) 596, 836
BstSCI CCNGG 1 cut(s) 92
BstSFI CTRYAG 1 cut(s) 261
BstV1I GCAGC 5 cut(s) 30, 596, 745, 848, 901
BstX2I RGATCY 3 cut(s) 480, 851, 937
BstYI RGATCY 3 cut(s) 480, 851, 937
BsuI GTATCC 1 cut(s) 910
BsuRI GGCC 1 cut(s) 542
BtgI CCRYGG 1 cut(s) 710
BtsCI GGATG 3 cut(s) 102, 312, 878
Cac8I GCNNGC 2 cut(s) 346, 594
CaiI CAGNNNCTG 1 cut(s) 869
Cfr13I GGNCC 1 cut(s) 752
CseI GACGC 2 cut(s) 724, 971
CviAII CATG 5 cut(s) 287, 593, 711, 743, 833
DdeI CTNAG 7 cut(s) 47, 75, 355, 447, 638, 735, 821
DpnI GATC 4 cut(s) 303, 482, 853, 939
DpnII GATC 4 cut(s) 301, 480, 851, 937
DraI TTTAAA 1 cut(s) 795
Eam1104I CTCTTC 4 cut(s) 15, 92, 117, 356
EarI CTCTTC 4 cut(s) 15, 92, 117, 356
Eco130I CCWWGG 4 cut(s) 56, 175, 710, 802
Eco24I GRGCYC 1 cut(s) 646
Eco47I GGWCC 1 cut(s) 752
Eco57I CTGAAG 1 cut(s) 642
Eco88I CYCGRG 1 cut(s) 856
EcoT14I CCWWGG 4 cut(s) 56, 175, 710, 802
EcoT38I GRGCYC 1 cut(s) 646
ErhI CCWWGG 4 cut(s) 56, 175, 710, 802
FaeI CATG 5 cut(s) 290, 596, 714, 746, 836
FaqI GGGAC 1 cut(s) 874
FatI CATG 5 cut(s) 286, 592, 710, 742, 832
FauNDI CATATG 1 cut(s) 720
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 6 cut(s) 6, 44, 585, 759, 837, 915
FokI GGATG 3 cut(s) 109, 319, 865
FriOI GRGCYC 1 cut(s) 646
Fsp4HI GCNGC 6 cut(s) 6, 44, 585, 759, 837, 915
FspBI CTAG 4 cut(s) 57, 672, 773, 803
GluI GCNGC 6 cut(s) 6, 44, 585, 759, 837, 915
GsuI CTGGAG 4 cut(s) 54, 207, 539, 891
HaeIII GGCC 1 cut(s) 542
HapII CCGG 1 cut(s) 93
HgaI GACGC 2 cut(s) 724, 971
Hin1II CATG 5 cut(s) 290, 596, 714, 746, 836
HinfI GANTC 6 cut(s) 547, 629, 653, 827, 894, 945
HpaII CCGG 1 cut(s) 93
HphI GGTGA 3 cut(s) 144, 155, 989
Hpy166II GTNNAC 2 cut(s) 265, 770
Hpy188I TCNGA 6 cut(s) 306, 358, 448, 514, 535, 904
Hpy188III TCNNGA 6 cut(s) 116, 194, 365, 662, 935, 968
Hpy8I GTNNAC 2 cut(s) 265, 770
HpyCH4III ACNGT 8 cut(s) 208, 262, 432, 462, 767, 865, 908, 925
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 7 cut(s) 236, 422, 456, 478, 761, 836, 917
HpyF10VI GCNNNNNNNGC 5 cut(s) 43, 233, 593, 962, 979
HpyF3I CTNAG 7 cut(s) 47, 75, 355, 447, 638, 735, 821
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 5 cut(s) 290, 596, 714, 746, 836
Kzo9I GATC 4 cut(s) 301, 480, 851, 937
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 1 cut(s) 73
Lsp1109I GCAGC 5 cut(s) 30, 596, 745, 848, 901
LweI GCATC 2 cut(s) 172, 403
MaeI CTAG 4 cut(s) 57, 672, 773, 803
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 2 cut(s) 50, 886
MalI GATC 4 cut(s) 303, 482, 853, 939
MboI GATC 4 cut(s) 301, 480, 851, 937
MflI RGATCY 3 cut(s) 480, 851, 937
MhlI GDGCHC 1 cut(s) 646
MluCI AATT 1 cut(s) 702
MlyI GAGTC 1 cut(s) 821
MmeI TCCRAC 1 cut(s) 927
MnlI CCTC 8 cut(s) 95, 334, 359, 442, 744, 865, 892, 959
MroXI GAANNNNTTC 4 cut(s) 207, 276, 315, 657
MseI TTAA 3 cut(s) 794, 920, 988
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 94
Mva1269I GAATGC 2 cut(s) 458, 677
MwoI GCNNNNNNNGC 5 cut(s) 43, 233, 593, 962, 979
NciI CCSGG 1 cut(s) 94
NcoI CCATGG 1 cut(s) 710
NdeI CATATG 1 cut(s) 720
NdeII GATC 4 cut(s) 301, 480, 851, 937
NlaIII CATG 5 cut(s) 290, 596, 714, 746, 836
NlaIV GGNNCC 2 cut(s) 292, 853
NmeAIII GCCGAG 1 cut(s) 932
NspI RCATGY 2 cut(s) 596, 836
PaeI GCATGC 1 cut(s) 596
PciSI GCTCTTC 1 cut(s) 117
PctI GAATGC 2 cut(s) 458, 677
PdmI GAANNNNTTC 4 cut(s) 207, 276, 315, 657
PfeI GAWTC 5 cut(s) 547, 629, 653, 894, 945
PkrI GCNGC 6 cut(s) 7, 45, 586, 760, 838, 916
PleI GAGTC 1 cut(s) 821
PpsI GAGTC 1 cut(s) 821
Psp1406I AACGTT 1 cut(s) 103
PspN4I GGNNCC 2 cut(s) 292, 853
PspPI GGNCC 1 cut(s) 752
PstNI CAGNNNCTG 1 cut(s) 869
PsuI RGATCY 3 cut(s) 480, 851, 937
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 3 cut(s) 794, 920, 988
SatI GCNGC 6 cut(s) 6, 44, 585, 759, 837, 915
Sau3AI GATC 4 cut(s) 301, 480, 851, 937
Sau96I GGNCC 1 cut(s) 752
SchI GAGTC 1 cut(s) 821
ScrFI CCNGG 1 cut(s) 94
SduI GDGCHC 1 cut(s) 646
SfaNI GCATC 2 cut(s) 172, 403
SfcI CTRYAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 752
SphI GCATGC 1 cut(s) 596
Sse9I AATT 1 cut(s) 702
SsiI CCGC 1 cut(s) 5
SspI AATATT 2 cut(s) 221, 325
SspMI CTAG 4 cut(s) 57, 672, 773, 803
StyD4I CCNGG 1 cut(s) 92
StyI CCWWGG 4 cut(s) 56, 175, 710, 802
TaaI ACNGT 8 cut(s) 208, 262, 432, 462, 767, 865, 908, 925
TaiI ACGT 1 cut(s) 106
TaqI TCGA 5 cut(s) 117, 488, 573, 845, 934
TasI AATT 1 cut(s) 702
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 5 cut(s) 547, 629, 653, 894, 945
Tru1I TTAA 3 cut(s) 794, 920, 988
Tru9I TTAA 3 cut(s) 794, 920, 988
TseI GCWGC 5 cut(s) 43, 584, 758, 836, 914
TspDTI ATGAA 4 cut(s) 213, 312, 624, 731
VpaK11BI GGWCC 1 cut(s) 752
XapI RAATTY 1 cut(s) 702
XceI RCATGY 2 cut(s) 596, 836
XcmI CCANNNNNNNNNTGG 1 cut(s) 182
XmaJI CCTAGG 2 cut(s) 56, 802
XmiI GTMKAC 1 cut(s) 264
XmnI GAANNNNTTC 4 cut(s) 207, 276, 315, 657
XspI CTAG 4 cut(s) 57, 672, 773, 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.