Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003865

Physical Location & Seq

Genomic Coordinates Forward (+)

21608334 .. 21615223

Gene Structure 6890 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g28610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCAGGGAGACAAATGGAAGAAATACAGCGGAAGCTGGCGGTGCTGAACTATCCCAGAGCGAATGCGGCCGCTCAGTCCCTCCTCTTCGCCGGCCTCGAACGCTACTCTCTTTTTGAGTGGCTCTTCTTCCGCTTGTTGGGGGACAAGTCACCCTTCTCCCACCAAAACCTTCAAGGCGACGAAGAGACTGCTCGCATTCAGTATTTGGCAGAGATTGCAAAGTTTTTGGGTATTACTAATACAATAGACACAGAAGCAATCCAAGGACGAGGAAGCTATGAAGATCGTACTGAAATGCTTCGTCTAATTGTAGATCTTGTGGAGGCAAGCATGTTTGCTGATAATCAAGAATGGAGTATTGATGAGCAGGTAGCAAAGGATATACAGCTGATTGATTCCATTGCTGAAAAGCAAGCTCAAATATTCTCTGAAGATTGCAAATTGTTTCCTGCTGATGTTCAGATTCAAGCTATATATCCATTACCTAATGTTTCTGAGCTGGAGCAAAAGCTTTCAGAACAATCAAAGACACTCTTACATCTTCAACAAAAGGTTGATGATTTGGCATCAAAGCATGCTTACAACCCACATGAGGACTATGCAGAGGTGGAATCCGCATTGCGTTCCCATTTGGAATCTTTTCTGGAAACTGCAAGATCATTCAATATGATTTACACCAAGGAAATACGTCCCTGGACACACATGATGGAGGTACCGCAGCTCCATGGGTTCGGGCCTGCTGCCAATCGCTTGTTGGAGGCATATAAGATGCTTTTGAAGTTTCTAGGGAACTTGAGGAATCTTAGAGATTCGCATGCAGCTCTCGCTCTTGGATCATCTGACTCAGTTACCAGTGAGCCCTCTTCTGTGACGAGAATAATCTCAGAATGTGAATCGGCAGTGACATTCTTAAATCGTGACCTTGGGATTCTTTCTGCTTCGGTTGCTAGAGAGCAAGGTGAGGATGTCAATTTGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0008017 GO:0008092 GO:0009524 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051011 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_NMP1

Protein Analysis

328

Amino Acids

36.98

Weight (kDa)

4.89

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_NMP1	PF06694	6 - 319	4.4e-183	Plant nuclear matrix protein 1 (NMP1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17620
fragaria_vesca	FvH4_3g28610 FvH4_7g07660 FvH4_7g07660 FvH4_7g07660 FvH4_7g07660
malus_domestica	MD02G1233500.v1.1 MD07G1080100.v1.1
prunus_persica	Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1
pyrus_communis	pycom07g06370
rosa_chinensis	RchiOBHm_Chr1g0342701
rosa_laevigata	RLG00000029168 RLG00000029187
rosa_multiflora	Rmu_sc0000173.1_g000040
rosa_roxburghii	Rroxscaffold_4G00313150
rosa_rugosa	Rorug01G0146700.1 Rorug05G0271600
rosa_samantha	Rh1AG163400 Rh1AG164900 Rh1BG131200 Rh1CG153600 Rh1DG166200 Rh5CG380600
rosa_wichuraiana	Rw0G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	361
Acc65I	GGTACC	1 cut(s)	715
AccB1I	GGYRCC	1 cut(s)	715
AccBSI	CCGCTC	1 cut(s)	74
AciI	CCGC	7 cut(s)	31, 41, 68, 72, 133, 618, 719
AclWI	GGATC	1 cut(s)	844
AcoI	YGGCCR	1 cut(s)	69
AcuI	CTGAAG	1 cut(s)	453
AfaI	GTAC	2 cut(s)	292, 717
AfiI	CCNNNNNNNGG	2 cut(s)	139, 595
AgsI	TTSAA	5 cut(s)	176, 470, 548, 667, 781
AjnI	CCWGG	1 cut(s)	695
AluBI	AGCT	9 cut(s)	37, 279, 391, 419, 473, 502, 514, 724, 824
AluI	AGCT	9 cut(s)	37, 279, 391, 419, 473, 502, 514, 724, 824
Alw26I	GTCTC	2 cut(s)	4, 182
AlwI	GGATC	1 cut(s)	844
AoxI	GGCC	3 cut(s)	69, 94, 737
ApeKI	GCWGC	3 cut(s)	721, 743, 821
Asp700I	GAANNNNTTC	2 cut(s)	300, 642
Asp718I	GGTACC	1 cut(s)	715
AspS9I	GGNCC	1 cut(s)	737
AsuHPI	GGTGA	2 cut(s)	144, 974
BanI	GGYRCC	1 cut(s)	715
BanII	GRGCYC	1 cut(s)	864
BbvI	GCAGC	3 cut(s)	730, 733, 833
BccI	CCATC	1 cut(s)	703
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciT130I	CCWGG	1 cut(s)	697
BcoDI	GTCTC	2 cut(s)	4, 182
BfaI	CTAG	2 cut(s)	788, 951
BfuAI	ACCTGC	1 cut(s)	361
BglII	AGATCT	1 cut(s)	316
BisI	GCNGC	5 cut(s)	69, 72, 722, 744, 822
BlsI	GCNGC	5 cut(s)	70, 73, 723, 745, 823
Bme1390I	CCNGG	1 cut(s)	697
BmgT120I	GGNCC	1 cut(s)	737
BmiI	GGNNCC	1 cut(s)	717
BmrFI	CCNGG	1 cut(s)	697
BmsI	GCATC	2 cut(s)	578, 762
BpmI	CTGGAG	1 cut(s)	524
BpuEI	CTTGAG	1 cut(s)	817
BsaJI	CCNNGG	5 cut(s)	265, 681, 695, 727, 925
BsaXI	ACNNNNNCTCC	2 cut(s)	708, 738
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 595
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	1 cut(s)	855
Bse3DI	GCAATG	2 cut(s)	402, 620
BseBI	CCWGG	1 cut(s)	697
BseDI	CCNNGG	5 cut(s)	265, 681, 695, 727, 925
BseGI	GGATG	1 cut(s)	973
BseLI	CCNNNNNNNGG	2 cut(s)	139, 595
BseMI	GCAATG	2 cut(s)	402, 620
BseMII	CTCAG	4 cut(s)	89, 489, 861, 900
BseNI	ACTGG	1 cut(s)	855
BseRI	GAGGAG	1 cut(s)	74
BseX3I	CGGCCG	1 cut(s)	69
BseXI	GCAGC	3 cut(s)	730, 733, 833
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	3 cut(s)	71, 96, 739
BshNI	GGYRCC	1 cut(s)	715
BsiEI	CGRYCG	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	3 cut(s)	64, 158, 678
BslI	CCNNNNNNNGG	2 cut(s)	139, 595
BsmAI	GTCTC	2 cut(s)	4, 182
BsmFI	GGGAC	3 cut(s)	64, 158, 678
BsmI	GAATGC	2 cut(s)	70, 198
BsnI	GGCC	3 cut(s)	71, 96, 739
Bsp1286I	GDGCHC	1 cut(s)	864
Bsp143I	GATC	4 cut(s)	286, 316, 659, 836
Bsp19I	CCATGG	1 cut(s)	727
BspACI	CCGC	7 cut(s)	31, 41, 68, 72, 133, 618, 719
BspANI	GGCC	3 cut(s)	71, 96, 739
BspCNI	CTCAG	4 cut(s)	88, 490, 860, 899
BspLI	GGNNCC	1 cut(s)	717
BspMI	ACCTGC	1 cut(s)	361
BspPI	GGATC	1 cut(s)	844
BspQI	GCTCTTC	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	715
BsrBI	CCGCTC	1 cut(s)	74
BsrDI	GCAATG	2 cut(s)	402, 620
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	855
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	5 cut(s)	265, 681, 695, 727, 925
BssMI	GATC	4 cut(s)	286, 316, 659, 836
BssT1I	CCWWGG	4 cut(s)	265, 681, 727, 925
Bst2UI	CCWGG	1 cut(s)	697
Bst6I	CTCTTC	4 cut(s)	92, 131, 180, 871
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstC8I	GCNNGC	8 cut(s)	39, 94, 196, 331, 417, 579, 741, 819
BstDEI	CTNAG	5 cut(s)	75, 498, 806, 847, 886
BstDSI	CCRYGG	1 cut(s)	727
BstF5I	GGATG	1 cut(s)	973
BstKTI	GATC	4 cut(s)	289, 319, 662, 839
BstMAI	GTCTC	2 cut(s)	4, 182
BstMBI	GATC	4 cut(s)	286, 316, 659, 836
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 68, 102, 218, 827, 947
BstNI	CCWGG	1 cut(s)	697
BstNSI	RCATGY	3 cut(s)	337, 581, 821
BstSCI	CCNGG	1 cut(s)	695
BstV1I	GCAGC	3 cut(s)	730, 733, 833
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BstZI	CGGCCG	1 cut(s)	69
BsuRI	GGCC	3 cut(s)	71, 96, 739
BtgI	CCRYGG	1 cut(s)	727
BtsCI	GGATG	1 cut(s)	973
BtsI	GCAGTG	1 cut(s)	909
BtsIMutI	CAGTG	2 cut(s)	862, 909
BveI	ACCTGC	1 cut(s)	361
Cac8I	GCNNGC	8 cut(s)	39, 94, 196, 331, 417, 579, 741, 819
CciNI	GCGGCCGC	1 cut(s)	69
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	737
Csp6I	GTAC	2 cut(s)	291, 716
CviAII	CATG	6 cut(s)	334, 578, 593, 706, 728, 818
CviQI	GTAC	2 cut(s)	291, 716
DdeI	CTNAG	5 cut(s)	75, 498, 806, 847, 886
DpnI	GATC	4 cut(s)	288, 318, 661, 838
DpnII	GATC	4 cut(s)	286, 316, 659, 836
EaeI	YGGCCR	1 cut(s)	69
EagI	CGGCCG	1 cut(s)	69
Eam1104I	CTCTTC	4 cut(s)	92, 131, 180, 871
EarI	CTCTTC	4 cut(s)	92, 131, 180, 871
EclXI	CGGCCG	1 cut(s)	69
Eco130I	CCWWGG	4 cut(s)	265, 681, 727, 925
Eco24I	GRGCYC	1 cut(s)	864
Eco52I	CGGCCG	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	695
EcoT14I	CCWWGG	4 cut(s)	265, 681, 727, 925
EcoT38I	GRGCYC	1 cut(s)	864
ErhI	CCWWGG	4 cut(s)	265, 681, 727, 925
FaeI	CATG	6 cut(s)	337, 581, 596, 709, 731, 821
FalI	AAGNNNNNCTT	4 cut(s)	140, 172, 521, 553
FaqI	GGGAC	3 cut(s)	64, 158, 678
FatI	CATG	6 cut(s)	333, 577, 592, 705, 727, 817
Fnu4HI	GCNGC	5 cut(s)	69, 72, 722, 744, 822
FokI	GGATG	1 cut(s)	980
FriOI	GRGCYC	1 cut(s)	864
Fsp4HI	GCNGC	5 cut(s)	69, 72, 722, 744, 822
FspBI	CTAG	2 cut(s)	788, 951
GluI	GCNGC	5 cut(s)	69, 72, 722, 744, 822
GsuI	CTGGAG	1 cut(s)	524
HaeIII	GGCC	3 cut(s)	71, 96, 739
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	6 cut(s)	337, 581, 596, 709, 731, 821
HindIII	AAGCTT	1 cut(s)	512
HinfI	GANTC	9 cut(s)	398, 466, 614, 638, 802, 812, 845, 896, 931
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	144, 974
Hpy188I	TCNGA	6 cut(s)	433, 465, 499, 520, 844, 889
Hpy188III	TCNNGA	3 cut(s)	350, 647, 920
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	2 cut(s)	166, 182
HpyCH4IV	ACGT	1 cut(s)	691
HpyCH4V	TGCA	5 cut(s)	221, 441, 605, 656, 821
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 68, 102, 218, 827, 947
HpyF3I	CTNAG	5 cut(s)	75, 498, 806, 847, 886
HpySE526I	ACGT	1 cut(s)	691
Hsp92II	CATG	6 cut(s)	337, 581, 596, 709, 731, 821
KpnI	GGTACC	1 cut(s)	719
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	4 cut(s)	286, 316, 659, 836
LguI	GCTCTTC	1 cut(s)	131
LmnI	GCTCC	2 cut(s)	505, 729
Lsp1109I	GCAGC	3 cut(s)	730, 733, 833
LweI	GCATC	2 cut(s)	578, 762
MaeI	CTAG	2 cut(s)	788, 951
MaeII	ACGT	1 cut(s)	691
MaeIII	GTNAC	5 cut(s)	150, 850, 871, 904, 920
MalI	GATC	4 cut(s)	288, 318, 661, 838
MbiI	CCGCTC	1 cut(s)	74
MboI	GATC	4 cut(s)	286, 316, 659, 836
MboII	GAAGA	9 cut(s)	32, 79, 118, 121, 197, 296, 446, 536, 858
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	1 cut(s)	864
MluCI	AATT	3 cut(s)	309, 443, 973
MlyI	GAGTC	1 cut(s)	839
MmeI	TCCRAC	1 cut(s)	738
MroNI	GCCGGC	1 cut(s)	92
MroXI	GAANNNNTTC	2 cut(s)	300, 642
MseI	TTAA	1 cut(s)	914
MspA1I	CMGCKG	2 cut(s)	31, 391
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	697
Mva1269I	GAATGC	2 cut(s)	70, 198
MvaI	CCWGG	1 cut(s)	697
MwoI	GCNNNNNNNGC	6 cut(s)	43, 68, 102, 218, 827, 947
NaeI	GCCGGC	1 cut(s)	94
NcoI	CCATGG	1 cut(s)	727
NdeII	GATC	4 cut(s)	286, 316, 659, 836
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	6 cut(s)	337, 581, 596, 709, 731, 821
NlaIV	GGNNCC	1 cut(s)	717
NmuCI	GTSAC	4 cut(s)	150, 871, 904, 920
NotI	GCGGCCGC	1 cut(s)	69
NspI	RCATGY	3 cut(s)	337, 581, 821
PaeI	GCATGC	2 cut(s)	581, 821
PciSI	GCTCTTC	1 cut(s)	131
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PctI	GAATGC	2 cut(s)	70, 198
PdiI	GCCGGC	1 cut(s)	94
PdmI	GAANNNNTTC	2 cut(s)	300, 642
PfeI	GAWTC	8 cut(s)	398, 466, 614, 638, 802, 812, 896, 931
PkrI	GCNGC	5 cut(s)	70, 73, 723, 745, 823
PleI	GAGTC	1 cut(s)	839
PpsI	GAGTC	1 cut(s)	839
Psp6I	CCWGG	1 cut(s)	695
PspGI	CCWGG	1 cut(s)	695
PspN4I	GGNNCC	1 cut(s)	717
PspPI	GGNCC	1 cut(s)	737
PsuI	RGATCY	1 cut(s)	316
PvuII	CAGCTG	1 cut(s)	391
RsaI	GTAC	2 cut(s)	292, 717
RsaNI	GTAC	2 cut(s)	291, 716
SapI	GCTCTTC	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	914
SatI	GCNGC	5 cut(s)	69, 72, 722, 744, 822
Sau3AI	GATC	4 cut(s)	286, 316, 659, 836
Sau96I	GGNCC	1 cut(s)	737
SchI	GAGTC	1 cut(s)	839
ScrFI	CCNGG	1 cut(s)	697
SduI	GDGCHC	1 cut(s)	864
SfaNI	GCATC	2 cut(s)	578, 762
SmlI	CTYRAG	1 cut(s)	796
SmoI	CTYRAG	1 cut(s)	796
SphI	GCATGC	2 cut(s)	581, 821
Sse9I	AATT	3 cut(s)	309, 443, 973
SsiI	CCGC	7 cut(s)	31, 41, 68, 72, 133, 618, 719
SspI	AATATT	1 cut(s)	426
SspMI	CTAG	2 cut(s)	788, 951
StyD4I	CCNGG	1 cut(s)	695
StyI	CCWWGG	4 cut(s)	265, 681, 727, 925
TaiI	ACGT	1 cut(s)	694
TaqI	TCGA	1 cut(s)	99
TasI	AATT	3 cut(s)	309, 443, 973
TauI	GCSGC	2 cut(s)	71, 74
TfiI	GAWTC	8 cut(s)	398, 466, 614, 638, 802, 812, 896, 931
Tru1I	TTAA	1 cut(s)	914
Tru9I	TTAA	1 cut(s)	914
TscAI	CASTG	2 cut(s)	862, 909
TseFI	GTSAC	4 cut(s)	150, 871, 904, 920
TseI	GCWGC	3 cut(s)	721, 743, 821
Tsp45I	GTSAC	4 cut(s)	150, 871, 904, 920
TspDTI	ATGAA	1 cut(s)	297
TspRI	CASTG	2 cut(s)	862, 909
XceI	RCATGY	3 cut(s)	337, 581, 821
XcmI	CCANNNNNNNNNTGG	1 cut(s)	754
XmnI	GAANNNNTTC	2 cut(s)	300, 642
XspI	CTAG	2 cut(s)	788, 951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.