Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000173.1

Orthogroup ID

OG0003865

Physical Location & Seq

Genomic Coordinates Forward (+)

184991 .. 191238

Gene Structure 6248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000173.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atggcagcgaggcaaatggaagagatacagaggaagctggcgactttgaactacccgagagccaatgcgcctgctcagtctctcctcttcgccggcatggagcgctatgctcttctcgagtggctcttcttccgattgctgggggacaagtcacctttctcccaacaaagtcttcaaggggacgccatggatcgcgacgaagaaactgcccgcattcaatgtaagggacgaggaagttatgaagatcgcactgaaatgcttcgtttaattgtagatctcgtggaggcaagcatttttgctgataatccagaatggagtatagatgagcaggtagcaaaggatatacagctaattgattccattgcagagagacaagctcaaatattctcggaagagtgcaaattgtttcccgctgatgttcagattcagtctatatatccattgcatgatgtttctgagctggagcaaaagcttacagaacaatcaaagatactctcaagtcttcaacaaaaggttgatgatttggcatcaaagcatgcttacaacccagatgaggagtatgcagaggtagaatccagattgcgttcacatttggaatcttttctagaaactgcaagatcattcaatatggtttacaccaaggctctaagcttaagggactttacttggaaggggtcagggttcctagggaacttgaggaatcttagagactcacatgctgctcttgctgtgggatcatctgactcagttgctggtgagccctcttctgtcacaagaataatctcagaatgtgaatctgcgttgacattcttaaatcgtgaccttggaattctctcggcttccattgctcgagagcaaggtgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0008017 GO:0008092 GO:0009524 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051011 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_NMP1

Protein Analysis

288

Amino Acids

32.49

Weight (kDa)

4.79

Isoelectric Point (pI)

51.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17620
fragaria_vesca	FvH4_3g28610 FvH4_7g07660 FvH4_7g07660 FvH4_7g07660 FvH4_7g07660
malus_domestica	MD02G1233500.v1.1 MD07G1080100.v1.1
prunus_persica	Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1
pyrus_communis	pycom07g06370
rosa_chinensis	RchiOBHm_Chr1g0342701
rosa_laevigata	RLG00000029168 RLG00000029187
rosa_multiflora	Rmu_sc0000173.1_g000040
rosa_roxburghii	Rroxscaffold_4G00313150
rosa_rugosa	Rorug01G0146700.1 Rorug05G0271600
rosa_samantha	Rh1AG163400 Rh1AG164900 Rh1BG131200 Rh1CG153600 Rh1DG166200 Rh5CG380600
rosa_wichuraiana	Rw0G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	319
AccII	CGCG	1 cut(s)	195
AciI	CCGC	2 cut(s)	211, 411
AclWI	GGATC	2 cut(s)	198, 742
AcsI	RAATTY	1 cut(s)	828
AcyI	GRCGYC	1 cut(s)	183
AfeI	AGCGCT	1 cut(s)	104
AfiI	CCNNNNNNNGG	2 cut(s)	139, 553
AflII	CTTAAG	1 cut(s)	652
AgsI	TTSAA	5 cut(s)	49, 176, 218, 506, 625
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	6 cut(s)	37, 349, 377, 460, 472, 651
AluI	AGCT	6 cut(s)	37, 349, 377, 460, 472, 651
Alw26I	GTCTC	3 cut(s)	84, 364, 702
AlwI	GGATC	2 cut(s)	198, 742
AlwNI	CAGNNNCTG	1 cut(s)	752
Ama87I	CYCGRG	3 cut(s)	55, 116, 849
Aor51HI	AGCGCT	1 cut(s)	104
ApeKI	GCWGC	2 cut(s)	5, 719
ApoI	RAATTY	1 cut(s)	828
Asp700I	GAANNNNTTC	2 cut(s)	258, 600
AspA2I	CCTAGG	1 cut(s)	685
AspLEI	GCGC	2 cut(s)	70, 105
AsuHPI	GGTGA	2 cut(s)	144, 767
AvaI	CYCGRG	3 cut(s)	55, 116, 849
AvrII	CCTAGG	1 cut(s)	685
BanII	GRGCYC	1 cut(s)	762
BauI	CACGAG	1 cut(s)	278
BbsI	GAAGAC	2 cut(s)	164, 494
BbvI	GCAGC	2 cut(s)	17, 706
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BcoDI	GTCTC	3 cut(s)	84, 364, 702
BfaI	CTAG	2 cut(s)	605, 686
BfoI	RGCGCY	1 cut(s)	106
BfrI	CTTAAG	1 cut(s)	652
BfuAI	ACCTGC	1 cut(s)	319
BglII	AGATCT	1 cut(s)	274
BisI	GCNGC	2 cut(s)	6, 720
BlnI	CCTAGG	1 cut(s)	685
BlsI	GCNGC	2 cut(s)	7, 721
BmeT110I	CYCGRG	3 cut(s)	55, 116, 849
BmiI	GGNNCC	1 cut(s)	683
BmsI	GCATC	1 cut(s)	536
BpiI	GAAGAC	2 cut(s)	164, 494
BplI	GAGNNNNNCTC	2 cut(s)	361, 393
BpmI	CTGGAG	1 cut(s)	482
BpuEI	CTTGAG	2 cut(s)	481, 715
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	4 cut(s)	186, 639, 685, 823
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 553
Bse118I	RCCGGY	1 cut(s)	92
Bse3DI	GCAATG	3 cut(s)	360, 440, 843
BseDI	CCNNGG	4 cut(s)	186, 639, 685, 823
BseLI	CCNNNNNNNGG	2 cut(s)	139, 553
BseMI	GCAATG	3 cut(s)	360, 440, 843
BseMII	CTCAG	4 cut(s)	89, 447, 759, 798
BseRI	GAGGAG	2 cut(s)	74, 569
BseXI	GCAGC	2 cut(s)	17, 706
BseYI	CCCAGC	1 cut(s)	139
Bsh1236I	CGCG	1 cut(s)	195
BsiHKCI	CYCGRG	3 cut(s)	55, 116, 849
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	4 cut(s)	158, 194, 240, 671
BslI	CCNNNNNNNGG	2 cut(s)	139, 553
BsmAI	GTCTC	3 cut(s)	84, 364, 702
BsmFI	GGGAC	4 cut(s)	158, 194, 240, 671
BsmI	GAATGC	1 cut(s)	213
BsoBI	CYCGRG	3 cut(s)	55, 116, 849
Bsp1286I	GDGCHC	1 cut(s)	762
Bsp143I	GATC	5 cut(s)	190, 244, 274, 617, 734
Bsp19I	CCATGG	1 cut(s)	186
Bsp68I	TCGCGA	1 cut(s)	195
BspACI	CCGC	2 cut(s)	211, 411
BspCNI	CTCAG	4 cut(s)	88, 448, 758, 797
BspFNI	CGCG	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	683
BspMI	ACCTGC	1 cut(s)	319
BspPI	GGATC	2 cut(s)	198, 742
BspQI	GCTCTTC	2 cut(s)	117, 131
BspTI	CTTAAG	1 cut(s)	652
BsrDI	GCAATG	3 cut(s)	360, 440, 843
BsrFI	RCCGGY	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	4 cut(s)	186, 639, 685, 823
BssMI	GATC	5 cut(s)	190, 244, 274, 617, 734
BssNI	GRCGYC	1 cut(s)	183
BssSI	CACGAG	1 cut(s)	278
BssT1I	CCWWGG	4 cut(s)	186, 639, 685, 823
Bst2BI	CACGAG	1 cut(s)	278
Bst6I	CTCTTC	6 cut(s)	15, 92, 117, 131, 387, 769
BstACI	GRCGYC	1 cut(s)	183
BstAFI	CTTAAG	1 cut(s)	652
BstC8I	GCNNGC	6 cut(s)	39, 72, 94, 211, 289, 537
BstDEI	CTNAG	6 cut(s)	75, 456, 647, 704, 745, 784
BstDSI	CCRYGG	1 cut(s)	186
BstFNI	CGCG	1 cut(s)	195
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	2 cut(s)	70, 105
BstKTI	GATC	5 cut(s)	193, 247, 277, 620, 737
BstMAI	GTCTC	3 cut(s)	84, 364, 702
BstMBI	GATC	5 cut(s)	190, 244, 274, 617, 734
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 725, 845
BstNSI	RCATGY	2 cut(s)	539, 719
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	2 cut(s)	17, 706
BstV2I	GAAGAC	2 cut(s)	164, 494
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BtgI	CCRYGG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	249
BtuMI	TCGCGA	1 cut(s)	195
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	6 cut(s)	39, 72, 94, 211, 289, 537
CaiI	CAGNNNCTG	1 cut(s)	752
CfoI	GCGC	2 cut(s)	70, 105
Cfr10I	RCCGGY	1 cut(s)	92
CseI	GACGC	1 cut(s)	191
CviAII	CATG	5 cut(s)	97, 187, 446, 536, 716
DdeI	CTNAG	6 cut(s)	75, 456, 647, 704, 745, 784
DpnI	GATC	5 cut(s)	192, 246, 276, 619, 736
DpnII	GATC	5 cut(s)	190, 244, 274, 617, 734
Eam1104I	CTCTTC	6 cut(s)	15, 92, 117, 131, 387, 769
EarI	CTCTTC	6 cut(s)	15, 92, 117, 131, 387, 769
Eco130I	CCWWGG	4 cut(s)	186, 639, 685, 823
Eco24I	GRGCYC	1 cut(s)	762
Eco47III	AGCGCT	1 cut(s)	104
Eco88I	CYCGRG	3 cut(s)	55, 116, 849
EcoRI	GAATTC	1 cut(s)	828
EcoT14I	CCWWGG	4 cut(s)	186, 639, 685, 823
EcoT38I	GRGCYC	1 cut(s)	762
ErhI	CCWWGG	4 cut(s)	186, 639, 685, 823
FaeI	CATG	5 cut(s)	100, 190, 449, 539, 719
FaqI	GGGAC	4 cut(s)	158, 194, 240, 671
FatI	CATG	5 cut(s)	96, 186, 445, 535, 715
FauI	CCCGC	2 cut(s)	218, 418
Fnu4HI	GCNGC	2 cut(s)	6, 720
FriOI	GRGCYC	1 cut(s)	762
Fsp4HI	GCNGC	2 cut(s)	6, 720
FspBI	CTAG	2 cut(s)	605, 686
GlaI	GCGC	2 cut(s)	69, 104
GluI	GCNGC	2 cut(s)	6, 720
GsaI	CCCAGC	1 cut(s)	143
GsuI	CTGGAG	1 cut(s)	482
HaeII	RGCGCY	1 cut(s)	106
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	2 cut(s)	70, 105
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	5 cut(s)	100, 190, 449, 539, 719
Hin6I	GCGC	2 cut(s)	68, 103
HinP1I	GCGC	2 cut(s)	68, 103
HincII	GTYRAC	1 cut(s)	804
HindII	GTYRAC	1 cut(s)	804
HindIII	AAGCTT	2 cut(s)	470, 649
HinfI	GANTC	8 cut(s)	356, 424, 572, 596, 700, 710, 743, 794
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	144, 767
Hpy166II	GTNNAC	3 cut(s)	587, 634, 804
Hpy188I	TCNGA	6 cut(s)	134, 391, 423, 457, 742, 787
Hpy188III	TCNNGA	7 cut(s)	116, 194, 308, 576, 605, 818, 851
Hpy8I	GTNNAC	3 cut(s)	587, 634, 804
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	1 cut(s)	664
HpyCH4V	TGCA	5 cut(s)	365, 399, 445, 563, 614
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 725, 845
HpyF3I	CTNAG	6 cut(s)	75, 456, 647, 704, 745, 784
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	5 cut(s)	100, 190, 449, 539, 719
HspAI	GCGC	2 cut(s)	68, 103
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	5 cut(s)	190, 244, 274, 617, 734
LguI	GCTCTTC	2 cut(s)	117, 131
LmnI	GCTCC	2 cut(s)	100, 463
Lsp1109I	GCAGC	2 cut(s)	17, 706
LweI	GCATC	1 cut(s)	536
MaeI	CTAG	2 cut(s)	605, 686
MaeIII	GTNAC	3 cut(s)	150, 769, 818
MalI	GATC	5 cut(s)	192, 246, 276, 619, 736
MboI	GATC	5 cut(s)	190, 244, 274, 617, 734
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	762
MluCI	AATT	4 cut(s)	267, 351, 401, 828
MlyI	GAGTC	2 cut(s)	704, 737
MnlI	CCTC	9 cut(s)	3, 24, 95, 224, 277, 547, 559, 690, 772
MroNI	GCCGGC	1 cut(s)	92
MroXI	GAANNNNTTC	2 cut(s)	258, 600
MseI	TTAA	3 cut(s)	266, 653, 812
MslI	CAYNNNNRTG	1 cut(s)	254
MspA1I	CMGCKG	1 cut(s)	413
MspCI	CTTAAG	1 cut(s)	652
MspI	CCGG	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	213
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	3 cut(s)	102, 725, 845
NaeI	GCCGGC	1 cut(s)	94
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	5 cut(s)	190, 244, 274, 617, 734
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	5 cut(s)	100, 190, 449, 539, 719
NlaIV	GGNNCC	1 cut(s)	683
NmeAIII	GCCGAG	1 cut(s)	815
NmuCI	GTSAC	3 cut(s)	150, 769, 818
NruI	TCGCGA	1 cut(s)	195
NspI	RCATGY	2 cut(s)	539, 719
PaeI	GCATGC	1 cut(s)	539
PaeR7I	CTCGAG	2 cut(s)	116, 849
PciSI	GCTCTTC	2 cut(s)	117, 131
PctI	GAATGC	1 cut(s)	213
PdiI	GCCGGC	1 cut(s)	94
PdmI	GAANNNNTTC	2 cut(s)	258, 600
PfeI	GAWTC	6 cut(s)	356, 424, 572, 596, 700, 794
PkrI	GCNGC	2 cut(s)	7, 721
PleI	GAGTC	2 cut(s)	704, 737
PpsI	GAGTC	2 cut(s)	704, 737
PspFI	CCCAGC	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	683
PstNI	CAGNNNCTG	1 cut(s)	752
PsuI	RGATCY	1 cut(s)	274
RruI	TCGCGA	1 cut(s)	195
RseI	CAYNNNNRTG	1 cut(s)	254
SapI	GCTCTTC	2 cut(s)	117, 131
SaqAI	TTAA	3 cut(s)	266, 653, 812
SatI	GCNGC	2 cut(s)	6, 720
Sau3AI	GATC	5 cut(s)	190, 244, 274, 617, 734
SchI	GAGTC	2 cut(s)	704, 737
SduI	GDGCHC	1 cut(s)	762
SfaNI	GCATC	1 cut(s)	536
Sfr274I	CTCGAG	2 cut(s)	116, 849
SlaI	CTCGAG	2 cut(s)	116, 849
SmiMI	CAYNNNNRTG	1 cut(s)	254
SmlI	CTYRAG	5 cut(s)	116, 496, 652, 694, 849
SmoI	CTYRAG	5 cut(s)	116, 496, 652, 694, 849
SphI	GCATGC	1 cut(s)	539
Sse9I	AATT	4 cut(s)	267, 351, 401, 828
SsiI	CCGC	2 cut(s)	211, 411
SspI	AATATT	1 cut(s)	384
SspMI	CTAG	2 cut(s)	605, 686
StyI	CCWWGG	4 cut(s)	186, 639, 685, 823
TaqI	TCGA	2 cut(s)	117, 850
TasI	AATT	4 cut(s)	267, 351, 401, 828
TfiI	GAWTC	6 cut(s)	356, 424, 572, 596, 700, 794
Tru1I	TTAA	3 cut(s)	266, 653, 812
Tru9I	TTAA	3 cut(s)	266, 653, 812
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	3 cut(s)	150, 769, 818
TseI	GCWGC	2 cut(s)	5, 719
Tsp45I	GTSAC	3 cut(s)	150, 769, 818
TspDTI	ATGAA	1 cut(s)	255
TspRI	CASTG	1 cut(s)	256
Vha464I	CTTAAG	1 cut(s)	652
XapI	RAATTY	1 cut(s)	828
XbaI	TCTAGA	1 cut(s)	604
XceI	RCATGY	2 cut(s)	539, 719
XhoI	CTCGAG	2 cut(s)	116, 849
XmaJI	CCTAGG	1 cut(s)	685
XmnI	GAANNNNTTC	2 cut(s)	258, 600
XspI	CTAG	2 cut(s)	605, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.