MD07G1080100.v1.1

Plant nuclear matrix protein 1 (NMP1)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
7746326 .. 7751954
5629 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1080100.v1.1.491

Sequence Viewer

Length: 987 bp
ATGGCAGCAAGACAAATGGAAGAGATACAGAGGAAGCTGGCGCTTCTGAATTATCCTAGAGCCACTGCGGCTGCTCAGTCCCTCCTCTTCGCCGGCATGGAGCGCTACGCCCTTCTCGAGTGGCTCTTCTTCCGCTTGCTGGGGGACAAGTCGCCATTCTCTCAACAAAAGCTTCAAGGGGACGCCAACGAAGAGACCGCTCGAATCCAGTATTTGGCAGAGATTGCAAAGTTTTTGGGTATTACTACTACTATTGACACAGAAGCCATCCAAGGTCGAGGAAGCTATGAAGATCGCACTGAAATGCTTCGTCTAATTGTAGATCTTGTGGAGGCGAGTATTTATGCTGATAATCAAGAATGGAGTACCGATGAGCAGGTAGCAAAGGACATACAACTAATTGATTCCATAGCTGAAAAACAAGCTCAAATATTCTCCGAGGAGTGCAAATTGTTCCCTGCAGATGTTCAGATTCAGTCCATATATCCATTGCCTGATGTTTCTGAACTGGAGAAAAAGCTTTCAGAACAATCAAAGATATTCTTAAGTCTTCAACAGAAGGTTGACGATTTGGCTTCAAAGCATGCTTACAACCCAGATGAGGATTATGCAGAGGTGGAATCAAGATTGCGTGCACATTTGGAGTCTTTTCTGGAAACTGCAAAATCATTCAATACGATTTACACTAAGGAAATACGTCCCTGGACACATATGATGGAGGTACCCCAGCTCCATGGATTTGGGCCGGCTGCCAATCGATTGTTGGAGGCATACAAGATGCTTTTGAAGTTCCTGGGGAACTTGAGGAATCTTAGAGACTCATACGCAGCTCTTGCTGTTGGATCGTCTGACTCAGTTGCTGGCGAGCCCTCATCTGTCACAAGAATAATCTCTGAGTGTGAATCTGCGTTGACGTTCCTAAATCGCGACCTGGGGATTCTCTCAGCTTCCATTGCTCGCGAGCAAGGTGAGGAGGTGAGTTTATGA

Protein Analysis

329

Amino Acids

37.0

Weight (kDa)

4.79

Isoelectric Point (pI)

45.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_NMP1 PF06694 6 - 321 1.5e-188 Plant nuclear matrix protein 1 (NMP1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 367
Acc65I GGTACC 1 cut(s) 721
AccB1I GGYRCC 1 cut(s) 721
AccB7I CCANNNNNTGG 1 cut(s) 214
AccBSI CCGCTC 1 cut(s) 200
AccII CGCG 2 cut(s) 927, 960
AciI CCGC 3 cut(s) 68, 133, 198
AclWI GGATC 1 cut(s) 850
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 2 cut(s) 367, 723
AfeI AGCGCT 1 cut(s) 104
AfiI CCNNNNNNNGG 3 cut(s) 139, 214, 601
AflII CTTAAG 1 cut(s) 544
AgsI TTSAA 5 cut(s) 176, 554, 579, 673, 787
AjnI CCWGG 3 cut(s) 701, 792, 930
AluBI AGCT 9 cut(s) 37, 172, 285, 413, 425, 520, 730, 830, 947
AluI AGCT 9 cut(s) 37, 172, 285, 413, 425, 520, 730, 830, 947
Alw21I GWGCWC 1 cut(s) 637
Alw26I GTCTC 2 cut(s) 188, 810
Alw44I GTGCAC 1 cut(s) 633
AlwI GGATC 1 cut(s) 850
AlwNI CAGNNNCTG 1 cut(s) 860
Ama87I CYCGRG 1 cut(s) 116
Aor51HI AGCGCT 1 cut(s) 104
AoxI GGCC 1 cut(s) 743
ApaLI GTGCAC 1 cut(s) 633
ApeKI GCWGC 4 cut(s) 5, 71, 749, 827
Asp700I GAANNNNTTC 1 cut(s) 306
Asp718I GGTACC 1 cut(s) 721
AspLEI GCGC 2 cut(s) 43, 105
AspS9I GGNCC 1 cut(s) 743
AsuHPI GGTGA 1 cut(s) 980
AvaI CYCGRG 1 cut(s) 116
BaeGI GKGCMC 1 cut(s) 637
BanI GGYRCC 1 cut(s) 721
BanII GRGCYC 1 cut(s) 870
BbsI GAAGAC 1 cut(s) 542
Bbv12I GWGCWC 1 cut(s) 637
BbvI GCAGC 4 cut(s) 17, 58, 736, 839
BccI CCATC 2 cut(s) 275, 709
BciT130I CCWGG 3 cut(s) 703, 794, 932
BcoDI GTCTC 2 cut(s) 188, 810
BfaI CTAG 1 cut(s) 57
BfmI CTRYAG 1 cut(s) 459
BfoI RGCGCY 2 cut(s) 44, 106
BfrI CTTAAG 1 cut(s) 544
BfuAI ACCTGC 1 cut(s) 367
BglI GCCNNNNNGGC 1 cut(s) 68
BglII AGATCT 1 cut(s) 322
BisI GCNGC 5 cut(s) 6, 69, 72, 750, 828
BlsI GCNGC 5 cut(s) 7, 70, 73, 751, 829
Bme1390I CCNGG 3 cut(s) 703, 794, 932
BmeT110I CYCGRG 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 743
BmiI GGNNCC 1 cut(s) 723
BmrFI CCNGG 3 cut(s) 703, 794, 932
BmsI GCATC 1 cut(s) 768
BpiI GAAGAC 1 cut(s) 542
BpmI CTGGAG 1 cut(s) 530
BpuEI CTTGAG 1 cut(s) 823
Bsa29I ATCGAT 1 cut(s) 757
BsaHI GRCGYC 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 6 cut(s) 271, 438, 701, 733, 793, 931
BsaXI ACNNNNNCTCC 2 cut(s) 714, 744
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 214, 601
Bse118I RCCGGY 2 cut(s) 92, 745
Bse1I ACTGG 2 cut(s) 208, 513
Bse3DI GCAATG 2 cut(s) 488, 951
BseBI CCWGG 3 cut(s) 703, 794, 932
BseCI ATCGAT 1 cut(s) 757
BseDI CCNNGG 6 cut(s) 271, 438, 701, 733, 793, 931
BseGI GGATG 1 cut(s) 267
BseLI CCNNNNNNNGG 3 cut(s) 139, 214, 601
BseMI GCAATG 2 cut(s) 488, 951
BseMII CTCAG 4 cut(s) 89, 867, 885, 957
BseNI ACTGG 2 cut(s) 208, 513
BseRI GAGGAG 3 cut(s) 74, 455, 986
BseSI GKGCMC 1 cut(s) 637
BseXI GCAGC 4 cut(s) 17, 58, 736, 839
BseYI CCCAGC 2 cut(s) 139, 726
Bsh1236I CGCG 2 cut(s) 927, 960
BshFI GGCC 1 cut(s) 745
BshNI GGYRCC 1 cut(s) 721
BshVI ATCGAT 1 cut(s) 757
BsiHKAI GWGCWC 1 cut(s) 637
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 2 cut(s) 93, 746
BslFI GGGAC 4 cut(s) 64, 158, 194, 684
BslI CCNNNNNNNGG 3 cut(s) 139, 214, 601
BsmAI GTCTC 2 cut(s) 188, 810
BsmFI GGGAC 4 cut(s) 64, 158, 194, 684
BsnI GGCC 1 cut(s) 745
Bso31I GGTCTC 1 cut(s) 188
BsoBI CYCGRG 1 cut(s) 116
Bsp1286I GDGCHC 2 cut(s) 637, 870
Bsp143I GATC 3 cut(s) 292, 322, 842
Bsp19I CCATGG 1 cut(s) 733
Bsp68I TCGCGA 2 cut(s) 927, 960
BspACI CCGC 3 cut(s) 68, 133, 198
BspANI GGCC 1 cut(s) 745
BspCNI CTCAG 4 cut(s) 88, 866, 886, 956
BspDI ATCGAT 1 cut(s) 757
BspFNI CGCG 2 cut(s) 927, 960
BspLI GGNNCC 1 cut(s) 723
BspMAI CTGCAG 1 cut(s) 463
BspMI ACCTGC 1 cut(s) 367
BspPI GGATC 1 cut(s) 850
BspQI GCTCTTC 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 721
BspTI CTTAAG 1 cut(s) 544
BspTNI GGTCTC 1 cut(s) 188
BsrBI CCGCTC 1 cut(s) 200
BsrDI GCAATG 2 cut(s) 488, 951
BsrFI RCCGGY 2 cut(s) 92, 745
BsrI ACTGG 2 cut(s) 208, 513
BssAI RCCGGY 2 cut(s) 92, 745
BssECI CCNNGG 6 cut(s) 271, 438, 701, 733, 793, 931
BssMI GATC 3 cut(s) 292, 322, 842
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 2 cut(s) 271, 733
Bst2UI CCWGG 3 cut(s) 703, 794, 932
Bst6I CTCTTC 4 cut(s) 15, 92, 131, 186
BstACI GRCGYC 1 cut(s) 183
BstAFI CTTAAG 1 cut(s) 544
BstAPI GCANNNNNTGC 2 cut(s) 224, 833
BstDEI CTNAG 6 cut(s) 75, 687, 812, 853, 894, 943
BstDSI CCRYGG 1 cut(s) 733
BstF5I GGATG 1 cut(s) 267
BstFNI CGCG 2 cut(s) 927, 960
BstH2I RGCGCY 2 cut(s) 44, 106
BstHHI GCGC 2 cut(s) 43, 105
BstKTI GATC 3 cut(s) 295, 325, 845
BstMAI GTCTC 2 cut(s) 188, 810
BstMBI GATC 3 cut(s) 292, 322, 842
BstMWI GCNNNNNNNGC 5 cut(s) 68, 102, 224, 833, 953
BstNI CCWGG 3 cut(s) 703, 794, 932
BstNSI RCATGY 1 cut(s) 587
BstSCI CCNGG 3 cut(s) 701, 792, 930
BstSFI CTRYAG 1 cut(s) 459
BstSLI GKGCMC 1 cut(s) 637
BstUI CGCG 2 cut(s) 927, 960
BstV1I GCAGC 4 cut(s) 17, 58, 736, 839
BstV2I GAAGAC 1 cut(s) 542
BstX2I RGATCY 1 cut(s) 322
BstXI CCANNNNNNTGG 2 cut(s) 734, 740
BstYI RGATCY 1 cut(s) 322
Bsu15I ATCGAT 1 cut(s) 757
BsuRI GGCC 1 cut(s) 745
BsuTUI ATCGAT 1 cut(s) 757
BtgI CCRYGG 1 cut(s) 733
BtsCI GGATG 1 cut(s) 267
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 2 cut(s) 63, 297
BtuMI TCGCGA 2 cut(s) 927, 960
BveI ACCTGC 1 cut(s) 367
CaiI CAGNNNCTG 1 cut(s) 860
CfoI GCGC 2 cut(s) 43, 105
Cfr10I RCCGGY 2 cut(s) 92, 745
Cfr13I GGNCC 1 cut(s) 743
ClaI ATCGAT 1 cut(s) 757
CseI GACGC 1 cut(s) 191
Csp6I GTAC 2 cut(s) 366, 722
CviAII CATG 3 cut(s) 97, 584, 734
CviQI GTAC 2 cut(s) 366, 722
DdeI CTNAG 6 cut(s) 75, 687, 812, 853, 894, 943
DpnI GATC 3 cut(s) 294, 324, 844
DpnII GATC 3 cut(s) 292, 322, 842
Eam1104I CTCTTC 4 cut(s) 15, 92, 131, 186
EarI CTCTTC 4 cut(s) 15, 92, 131, 186
Eco130I CCWWGG 2 cut(s) 271, 733
Eco24I GRGCYC 1 cut(s) 870
Eco31I GGTCTC 1 cut(s) 188
Eco47III AGCGCT 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 116
EcoRII CCWGG 3 cut(s) 701, 792, 930
EcoT14I CCWWGG 2 cut(s) 271, 733
EcoT38I GRGCYC 1 cut(s) 870
ErhI CCWWGG 2 cut(s) 271, 733
FaeI CATG 3 cut(s) 100, 587, 737
FalI AAGNNNNNCTT 2 cut(s) 527, 559
FaqI GGGAC 4 cut(s) 64, 158, 194, 684
FatI CATG 3 cut(s) 96, 583, 733
FauNDI CATATG 1 cut(s) 711
Fnu4HI GCNGC 5 cut(s) 6, 69, 72, 750, 828
FokI GGATG 1 cut(s) 254
FriOI GRGCYC 1 cut(s) 870
Fsp4HI GCNGC 5 cut(s) 6, 69, 72, 750, 828
FspBI CTAG 1 cut(s) 57
GlaI GCGC 2 cut(s) 42, 104
GluI GCNGC 5 cut(s) 6, 69, 72, 750, 828
GsaI CCCAGC 2 cut(s) 143, 730
GsuI CTGGAG 1 cut(s) 530
HaeII RGCGCY 2 cut(s) 44, 106
HaeIII GGCC 1 cut(s) 745
HapII CCGG 2 cut(s) 93, 746
HgaI GACGC 1 cut(s) 191
HhaI GCGC 2 cut(s) 43, 105
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 3 cut(s) 100, 587, 737
Hin6I GCGC 2 cut(s) 41, 103
HinP1I GCGC 2 cut(s) 41, 103
HincII GTYRAC 2 cut(s) 565, 912
HindII GTYRAC 2 cut(s) 565, 912
HindIII AAGCTT 2 cut(s) 170, 518
HpaII CCGG 2 cut(s) 93, 746
HphI GGTGA 1 cut(s) 980
Hpy166II GTNNAC 3 cut(s) 565, 635, 912
Hpy188I TCNGA 7 cut(s) 48, 439, 471, 505, 526, 850, 895
Hpy188III TCNNGA 6 cut(s) 116, 356, 624, 653, 926, 959
Hpy8I GTNNAC 3 cut(s) 565, 635, 912
HpyAV CCTTC 2 cut(s) 122, 553
HpyCH4IV ACGT 2 cut(s) 697, 914
HpyCH4V TGCA 6 cut(s) 227, 447, 461, 611, 635, 662
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 102, 224, 833, 953
HpyF3I CTNAG 6 cut(s) 75, 687, 812, 853, 894, 943
HpySE526I ACGT 2 cut(s) 697, 914
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 3 cut(s) 100, 587, 737
HspAI GCGC 2 cut(s) 41, 103
KpnI GGTACC 1 cut(s) 725
KroI GCCGGC 2 cut(s) 92, 745
KroNI GCCGGC 2 cut(s) 94, 747
Kzo9I GATC 3 cut(s) 292, 322, 842
LguI GCTCTTC 1 cut(s) 131
LmnI GCTCC 2 cut(s) 100, 735
Lsp1109I GCAGC 4 cut(s) 17, 58, 736, 839
LweI GCATC 1 cut(s) 768
MaeI CTAG 1 cut(s) 57
MaeII ACGT 2 cut(s) 697, 914
MaeIII GTNAC 1 cut(s) 877
MalI GATC 3 cut(s) 294, 324, 844
MbiI CCGCTC 1 cut(s) 200
MboI GATC 3 cut(s) 292, 322, 842
MboII GAAGA 7 cut(s) 32, 79, 118, 121, 203, 302, 542
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 2 cut(s) 637, 870
MluCI AATT 4 cut(s) 49, 315, 399, 449
MlyI GAGTC 3 cut(s) 653, 812, 845
MmeI TCCRAC 2 cut(s) 744, 820
MroNI GCCGGC 2 cut(s) 92, 745
MroXI GAANNNNTTC 1 cut(s) 306
MseI TTAA 1 cut(s) 545
MslI CAYNNNNRTG 1 cut(s) 302
MspCI CTTAAG 1 cut(s) 544
MspI CCGG 2 cut(s) 93, 746
MspR9I CCNGG 3 cut(s) 703, 794, 932
MvaI CCWGG 3 cut(s) 703, 794, 932
MvnI CGCG 2 cut(s) 927, 960
MwoI GCNNNNNNNGC 5 cut(s) 68, 102, 224, 833, 953
NaeI GCCGGC 2 cut(s) 94, 747
NcoI CCATGG 1 cut(s) 733
NdeI CATATG 1 cut(s) 711
NdeII GATC 3 cut(s) 292, 322, 842
NgoMIV GCCGGC 2 cut(s) 92, 745
NlaIII CATG 3 cut(s) 100, 587, 737
NlaIV GGNNCC 1 cut(s) 723
NmuCI GTSAC 1 cut(s) 877
NruI TCGCGA 2 cut(s) 927, 960
NspI RCATGY 1 cut(s) 587
PaeI GCATGC 1 cut(s) 587
PaeR7I CTCGAG 1 cut(s) 116
PciSI GCTCTTC 1 cut(s) 131
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PdiI GCCGGC 2 cut(s) 94, 747
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 7 cut(s) 204, 404, 472, 620, 808, 902, 937
PflMI CCANNNNNTGG 1 cut(s) 214
PkrI GCNGC 5 cut(s) 7, 70, 73, 751, 829
PleI GAGTC 3 cut(s) 652, 812, 845
PpsI GAGTC 3 cut(s) 652, 812, 845
Psp6I CCWGG 3 cut(s) 701, 792, 930
PspFI CCCAGC 2 cut(s) 139, 726
PspGI CCWGG 3 cut(s) 701, 792, 930
PspN4I GGNNCC 1 cut(s) 723
PspPI GGNCC 1 cut(s) 743
PstI CTGCAG 1 cut(s) 463
PstNI CAGNNNCTG 1 cut(s) 860
PsuI RGATCY 1 cut(s) 322
RruI TCGCGA 2 cut(s) 927, 960
RsaI GTAC 2 cut(s) 367, 723
RsaNI GTAC 2 cut(s) 366, 722
RseI CAYNNNNRTG 1 cut(s) 302
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 545
SatI GCNGC 5 cut(s) 6, 69, 72, 750, 828
Sau3AI GATC 3 cut(s) 292, 322, 842
Sau96I GGNCC 1 cut(s) 743
SchI GAGTC 3 cut(s) 653, 812, 845
ScrFI CCNGG 3 cut(s) 703, 794, 932
SduI GDGCHC 2 cut(s) 637, 870
SfaNI GCATC 1 cut(s) 768
SfcI CTRYAG 1 cut(s) 459
Sfr274I CTCGAG 1 cut(s) 116
SlaI CTCGAG 1 cut(s) 116
SmiMI CAYNNNNRTG 1 cut(s) 302
SmlI CTYRAG 3 cut(s) 116, 544, 802
SmoI CTYRAG 3 cut(s) 116, 544, 802
SphI GCATGC 1 cut(s) 587
Sse9I AATT 4 cut(s) 49, 315, 399, 449
SsiI CCGC 3 cut(s) 68, 133, 198
SspI AATATT 1 cut(s) 432
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 3 cut(s) 701, 792, 930
StyI CCWWGG 2 cut(s) 271, 733
TaiI ACGT 2 cut(s) 700, 917
TaqI TCGA 4 cut(s) 117, 202, 277, 757
TasI AATT 4 cut(s) 49, 315, 399, 449
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 7 cut(s) 204, 404, 472, 620, 808, 902, 937
Tru1I TTAA 1 cut(s) 545
Tru9I TTAA 1 cut(s) 545
TscAI CASTG 2 cut(s) 70, 304
TseFI GTSAC 1 cut(s) 877
TseI GCWGC 4 cut(s) 5, 71, 749, 827
Tsp45I GTSAC 1 cut(s) 877
TspDTI ATGAA 1 cut(s) 303
TspRI CASTG 2 cut(s) 70, 304
Van91I CCANNNNNTGG 1 cut(s) 214
Vha464I CTTAAG 1 cut(s) 544
VneI GTGCAC 1 cut(s) 633
XceI RCATGY 1 cut(s) 587
XcmI CCANNNNNNNNNTGG 1 cut(s) 760
XhoI CTCGAG 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.