Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003865

Physical Location & Seq

Genomic Coordinates Reverse (-)

16074572 .. 16083386

Gene Structure 8815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G104100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCAGCAAGACAAATGGAAGAGATACAGAGGAAGCTGGCGATGCTGAATTACTCGAGAGCCAATGCGCCTGCTCAGTCTCTCCTCTTCGCCGGGATGGAACGCTATGCTCTTCTCGAATGGCTGTTCTTCCGCTTGTTGGGGGACAAGTCACCCTTTTCTCAACAGAGTCTTCAAGGGGACGCCATGGATCGGGACGAAGAGACTGCTCGCATCCAATATTTGGCAGAGATTGCAAAGTTTTTGGGTATTACTACTACTGTAGACACAGAAGTTATCCAAGGACGAGGAAGCTATGAAGATCGCACTGAAATGCTTCGTCTTATTGTAGATCTTGTGGAGGCGAGCATTTATGCTGATAATCAAGAATGGAGTATCGATGAGCAGGTAGCGAAGGACATACAACTGATTGATTCTATTGCTGAAAGACAAGCTCAAATATTCTCCGAGGAGTGCAAATTATTCCCTGCTGATGTTCAAATTCAGTCCATATATCCATTGCCTGATGTTTCTGAATTGGAAAAAAAGCTTTCAGAACAATCAAAGATACTCTTAAGTCTTCAACAGAAGGTTGACGATTTGGCATCAAAGCATGCATACAACCCAGATGAGGATTATGCAGAGGTGGAGTCCAGATTGCGTTCACATTTGGAATCTTTCCTAGAAACTGCAAGATCATTCAACACGATTTACACTAAGGAAATACGTCCCTGGACACACATGATGGAGGTACCCCAGCTCCATGGGTTTGGGCCAGCTGCCAATCGCTTGTTAGAGGCATACAAGATGCTTTTAAAGTTCCTAGGGAACTTGAGGAATCTTAGAGACTCCCACGCAGCTCTTGCTGTCGGATCATCTGACTCAGTTGCGGGTGAGCCCTCGTCTGTCACGAGAATAATCTCTGAATGTGAATCTGCATTGACATTCTTAAATCGTGACCTTGGAATTCTCTCGGCTTCCATTGCTCGCGAGCAAGGTGGGGAGGTGAATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0008017 GO:0008092 GO:0009524 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051011 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_NMP1

Protein Analysis

332

Amino Acids

37.4

Weight (kDa)

4.78

Isoelectric Point (pI)

49.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17620
fragaria_vesca	FvH4_3g28610 FvH4_7g07660 FvH4_7g07660 FvH4_7g07660 FvH4_7g07660
malus_domestica	MD02G1233500.v1.1 MD07G1080100.v1.1
prunus_persica	Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1
pyrus_communis	pycom07g06370
rosa_chinensis	RchiOBHm_Chr1g0342701
rosa_laevigata	RLG00000029168 RLG00000029187
rosa_multiflora	Rmu_sc0000173.1_g000040
rosa_roxburghii	Rroxscaffold_4G00313150
rosa_rugosa	Rorug01G0146700.1 Rorug05G0271600
rosa_samantha	Rh1AG163400 Rh1AG164900 Rh1BG131200 Rh1CG153600 Rh1DG166200 Rh5CG380600
rosa_wichuraiana	Rw0G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	994
Acc36I	ACCTGC	1 cut(s)	376
Acc65I	GGTACC	1 cut(s)	730
AccB1I	GGYRCC	1 cut(s)	730
AccB7I	CCANNNNNTGG	1 cut(s)	223
AccI	GTMKAC	1 cut(s)	264
AccII	CGCG	1 cut(s)	969
AciI	CCGC	2 cut(s)	133, 869
AclWI	GGATC	2 cut(s)	198, 859
AcsI	RAATTY	3 cut(s)	480, 945, 988
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	1 cut(s)	732
AfiI	CCNNNNNNNGG	4 cut(s)	139, 192, 223, 610
AflII	CTTAAG	1 cut(s)	553
AgsI	TTSAA	4 cut(s)	176, 479, 563, 682
AjnI	CCWGG	1 cut(s)	710
AluBI	AGCT	7 cut(s)	37, 294, 434, 529, 739, 758, 839
AluI	AGCT	7 cut(s)	37, 294, 434, 529, 739, 758, 839
Alw26I	GTCTC	3 cut(s)	84, 197, 819
AlwI	GGATC	2 cut(s)	198, 859
Ama87I	CYCGRG	1 cut(s)	55
AoxI	GGCC	1 cut(s)	752
ApeKI	GCWGC	3 cut(s)	5, 758, 836
ApoI	RAATTY	3 cut(s)	480, 945, 988
Asp700I	GAANNNNTTC	1 cut(s)	315
Asp718I	GGTACC	1 cut(s)	730
AspA2I	CCTAGG	1 cut(s)	802
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	1 cut(s)	752
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	2 cut(s)	144, 884
AvaI	CYCGRG	1 cut(s)	55
AvrII	CCTAGG	1 cut(s)	802
BanI	GGYRCC	1 cut(s)	730
BanII	GRGCYC	1 cut(s)	879
BauI	CACGAG	1 cut(s)	889
BbsI	GAAGAC	2 cut(s)	164, 551
BbvI	GCAGC	3 cut(s)	17, 745, 848
BccI	CCATC	2 cut(s)	91, 718
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BciT130I	CCWGG	1 cut(s)	712
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	3 cut(s)	84, 197, 819
BfaI	CTAG	2 cut(s)	662, 803
BfmI	CTRYAG	1 cut(s)	261
BfrI	CTTAAG	1 cut(s)	553
BfuAI	ACCTGC	1 cut(s)	376
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	3 cut(s)	6, 759, 837
BlnI	CCTAGG	1 cut(s)	802
BlsI	GCNGC	3 cut(s)	7, 760, 838
Bme1390I	CCNGG	2 cut(s)	94, 712
BmeT110I	CYCGRG	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	752
BmiI	GGNNCC	1 cut(s)	732
BmrFI	CCNGG	2 cut(s)	94, 712
BmsI	GCATC	4 cut(s)	33, 222, 593, 777
BpiI	GAAGAC	2 cut(s)	164, 551
BpuEI	CTTGAG	1 cut(s)	832
BpuMI	CCSGG	1 cut(s)	94
Bsa29I	ATCGAT	1 cut(s)	378
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	7 cut(s)	186, 280, 447, 710, 742, 802, 940
BsaXI	ACNNNNNCTCC	2 cut(s)	723, 753
Bsc4I	CCNNNNNNNGG	4 cut(s)	139, 192, 223, 610
Bse3DI	GCAATG	2 cut(s)	497, 960
BseBI	CCWGG	1 cut(s)	712
BseCI	ATCGAT	1 cut(s)	378
BseDI	CCNNGG	7 cut(s)	186, 280, 447, 710, 742, 802, 940
BseGI	GGATG	2 cut(s)	102, 213
BseLI	CCNNNNNNNGG	4 cut(s)	139, 192, 223, 610
BseMI	GCAATG	2 cut(s)	497, 960
BseMII	CTCAG	2 cut(s)	89, 876
BseRI	GAGGAG	2 cut(s)	74, 464
BseXI	GCAGC	3 cut(s)	17, 745, 848
BseYI	CCCAGC	1 cut(s)	735
Bsh1236I	CGCG	1 cut(s)	969
BshFI	GGCC	1 cut(s)	754
BshNI	GGYRCC	1 cut(s)	730
BshVI	ATCGAT	1 cut(s)	378
BsiHKCI	CYCGRG	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	4 cut(s)	158, 194, 209, 693
BslI	CCNNNNNNNGG	4 cut(s)	139, 192, 223, 610
BsmAI	GTCTC	3 cut(s)	84, 197, 819
BsmFI	GGGAC	4 cut(s)	158, 194, 209, 693
BsnI	GGCC	1 cut(s)	754
BsoBI	CYCGRG	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	879
Bsp143I	GATC	5 cut(s)	190, 301, 331, 674, 851
Bsp19I	CCATGG	2 cut(s)	186, 742
Bsp68I	TCGCGA	1 cut(s)	969
BspACI	CCGC	2 cut(s)	133, 869
BspANI	GGCC	1 cut(s)	754
BspCNI	CTCAG	2 cut(s)	88, 875
BspDI	ATCGAT	1 cut(s)	378
BspFNI	CGCG	1 cut(s)	969
BspLI	GGNNCC	1 cut(s)	732
BspMI	ACCTGC	1 cut(s)	376
BspPI	GGATC	2 cut(s)	198, 859
BspQI	GCTCTTC	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	730
BspTI	CTTAAG	1 cut(s)	553
BsrDI	GCAATG	2 cut(s)	497, 960
BssECI	CCNNGG	7 cut(s)	186, 280, 447, 710, 742, 802, 940
BssMI	GATC	5 cut(s)	190, 301, 331, 674, 851
BssNI	GRCGYC	1 cut(s)	183
BssSI	CACGAG	1 cut(s)	889
BssT1I	CCWWGG	5 cut(s)	186, 280, 742, 802, 940
Bst2BI	CACGAG	1 cut(s)	889
Bst2UI	CCWGG	1 cut(s)	712
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	4 cut(s)	15, 92, 117, 195
BstACI	GRCGYC	1 cut(s)	183
BstAFI	CTTAAG	1 cut(s)	553
BstAPI	GCANNNNNTGC	2 cut(s)	233, 842
BstC8I	GCNNGC	8 cut(s)	39, 72, 211, 346, 594, 756, 967, 971
BstDEI	CTNAG	4 cut(s)	75, 696, 821, 862
BstDSI	CCRYGG	2 cut(s)	186, 742
BstF5I	GGATG	2 cut(s)	102, 213
BstFNI	CGCG	1 cut(s)	969
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	5 cut(s)	193, 304, 334, 677, 854
BstMAI	GTCTC	3 cut(s)	84, 197, 819
BstMBI	GATC	5 cut(s)	190, 301, 331, 674, 851
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 233, 842, 962
BstNI	CCWGG	1 cut(s)	712
BstNSI	RCATGY	1 cut(s)	596
BstSCI	CCNGG	2 cut(s)	92, 710
BstSFI	CTRYAG	1 cut(s)	261
BstUI	CGCG	1 cut(s)	969
BstV1I	GCAGC	3 cut(s)	17, 745, 848
BstV2I	GAAGAC	2 cut(s)	164, 551
BstX2I	RGATCY	1 cut(s)	331
BstXI	CCANNNNNNTGG	2 cut(s)	743, 749
BstYI	RGATCY	1 cut(s)	331
Bsu15I	ATCGAT	1 cut(s)	378
BsuRI	GGCC	1 cut(s)	754
BsuTUI	ATCGAT	1 cut(s)	378
BtgI	CCRYGG	2 cut(s)	186, 742
BtgZI	GCGATG	1 cut(s)	56
BtsCI	GGATG	2 cut(s)	102, 213
BtsIMutI	CAGTG	1 cut(s)	306
BtuMI	TCGCGA	1 cut(s)	969
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	8 cut(s)	39, 72, 211, 346, 594, 756, 967, 971
CfoI	GCGC	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	752
ClaI	ATCGAT	1 cut(s)	378
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	731
CviAII	CATG	4 cut(s)	187, 593, 721, 743
CviQI	GTAC	1 cut(s)	731
DdeI	CTNAG	4 cut(s)	75, 696, 821, 862
DpnI	GATC	5 cut(s)	192, 303, 333, 676, 853
DpnII	GATC	5 cut(s)	190, 301, 331, 674, 851
DraI	TTTAAA	1 cut(s)	795
Eam1104I	CTCTTC	4 cut(s)	15, 92, 117, 195
EarI	CTCTTC	4 cut(s)	15, 92, 117, 195
Eco130I	CCWWGG	5 cut(s)	186, 280, 742, 802, 940
Eco24I	GRGCYC	1 cut(s)	879
Eco88I	CYCGRG	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	945
EcoRII	CCWGG	1 cut(s)	710
EcoT14I	CCWWGG	5 cut(s)	186, 280, 742, 802, 940
EcoT22I	ATGCAT	1 cut(s)	598
EcoT38I	GRGCYC	1 cut(s)	879
ErhI	CCWWGG	5 cut(s)	186, 280, 742, 802, 940
FaeI	CATG	4 cut(s)	190, 596, 724, 746
FalI	AAGNNNNNCTT	4 cut(s)	140, 172, 536, 568
FaqI	GGGAC	4 cut(s)	158, 194, 209, 693
FatI	CATG	4 cut(s)	186, 592, 720, 742
FauI	CCCGC	1 cut(s)	862
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	3 cut(s)	6, 759, 837
FokI	GGATG	2 cut(s)	109, 200
FriOI	GRGCYC	1 cut(s)	879
Fsp4HI	GCNGC	3 cut(s)	6, 759, 837
FspBI	CTAG	2 cut(s)	662, 803
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	3 cut(s)	6, 759, 837
GsaI	CCCAGC	1 cut(s)	739
HaeIII	GGCC	1 cut(s)	754
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	1 cut(s)	70
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	4 cut(s)	190, 596, 724, 746
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	8 cut(s)	169, 413, 629, 653, 817, 827, 860, 911
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	144, 884
Hpy166II	GTNNAC	3 cut(s)	265, 574, 644
Hpy188I	TCNGA	6 cut(s)	448, 514, 535, 851, 859, 904
Hpy188III	TCNNGA	8 cut(s)	57, 116, 194, 365, 633, 889, 935, 968
Hpy8I	GTNNAC	3 cut(s)	265, 574, 644
HpyAV	CCTTC	2 cut(s)	388, 562
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4IV	ACGT	1 cut(s)	706
HpyCH4V	TGCA	6 cut(s)	236, 456, 596, 620, 671, 917
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 233, 842, 962
HpyF3I	CTNAG	4 cut(s)	75, 696, 821, 862
HpySE526I	ACGT	1 cut(s)	706
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	4 cut(s)	190, 596, 724, 746
HspAI	GCGC	1 cut(s)	68
KpnI	GGTACC	1 cut(s)	734
Kzo9I	GATC	5 cut(s)	190, 301, 331, 674, 851
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	744
Lsp1109I	GCAGC	3 cut(s)	17, 745, 848
LweI	GCATC	4 cut(s)	33, 222, 593, 777
MaeI	CTAG	2 cut(s)	662, 803
MaeII	ACGT	1 cut(s)	706
MaeIII	GTNAC	3 cut(s)	150, 886, 935
MalI	GATC	5 cut(s)	192, 303, 333, 676, 853
MboI	GATC	5 cut(s)	190, 301, 331, 674, 851
MboII	GAAGA	8 cut(s)	32, 79, 104, 121, 164, 212, 311, 551
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	879
MluCI	AATT	6 cut(s)	49, 458, 480, 515, 945, 988
MlyI	GAGTC	4 cut(s)	178, 638, 821, 854
MmeI	TCCRAC	1 cut(s)	829
Mph1103I	ATGCAT	1 cut(s)	598
MroXI	GAANNNNTTC	1 cut(s)	315
MseI	TTAA	3 cut(s)	554, 794, 929
MslI	CAYNNNNRTG	1 cut(s)	311
MspA1I	CMGCKG	1 cut(s)	758
MspCI	CTTAAG	1 cut(s)	553
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	2 cut(s)	94, 712
MvaI	CCWGG	1 cut(s)	712
MvnI	CGCG	1 cut(s)	969
MwoI	GCNNNNNNNGC	4 cut(s)	43, 233, 842, 962
NciI	CCSGG	1 cut(s)	94
NcoI	CCATGG	2 cut(s)	186, 742
NdeII	GATC	5 cut(s)	190, 301, 331, 674, 851
NlaIII	CATG	4 cut(s)	190, 596, 724, 746
NlaIV	GGNNCC	1 cut(s)	732
NmeAIII	GCCGAG	1 cut(s)	932
NmuCI	GTSAC	3 cut(s)	150, 886, 935
NruI	TCGCGA	1 cut(s)	969
NsiI	ATGCAT	1 cut(s)	598
NspI	RCATGY	1 cut(s)	596
PaeI	GCATGC	1 cut(s)	596
PaeR7I	CTCGAG	1 cut(s)	55
PciSI	GCTCTTC	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	887
PdmI	GAANNNNTTC	1 cut(s)	315
PfeI	GAWTC	4 cut(s)	413, 653, 817, 911
PflMI	CCANNNNNTGG	1 cut(s)	223
PkrI	GCNGC	3 cut(s)	7, 760, 838
PleI	GAGTC	4 cut(s)	177, 637, 821, 854
PpsI	GAGTC	4 cut(s)	177, 637, 821, 854
PsiI	TTATAA	1 cut(s)	994
Psp6I	CCWGG	1 cut(s)	710
PspFI	CCCAGC	1 cut(s)	735
PspGI	CCWGG	1 cut(s)	710
PspN4I	GGNNCC	1 cut(s)	732
PspPI	GGNCC	1 cut(s)	752
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	758
RruI	TCGCGA	1 cut(s)	969
RsaI	GTAC	1 cut(s)	732
RsaNI	GTAC	1 cut(s)	731
RseI	CAYNNNNRTG	1 cut(s)	311
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	3 cut(s)	554, 794, 929
SatI	GCNGC	3 cut(s)	6, 759, 837
Sau3AI	GATC	5 cut(s)	190, 301, 331, 674, 851
Sau96I	GGNCC	1 cut(s)	752
SchI	GAGTC	4 cut(s)	178, 638, 821, 854
ScrFI	CCNGG	2 cut(s)	94, 712
SduI	GDGCHC	1 cut(s)	879
SfaNI	GCATC	4 cut(s)	33, 222, 593, 777
SfcI	CTRYAG	1 cut(s)	261
Sfr274I	CTCGAG	1 cut(s)	55
SlaI	CTCGAG	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	311
SmlI	CTYRAG	3 cut(s)	55, 553, 811
SmoI	CTYRAG	3 cut(s)	55, 553, 811
SphI	GCATGC	1 cut(s)	596
Sse9I	AATT	6 cut(s)	49, 458, 480, 515, 945, 988
SsiI	CCGC	2 cut(s)	133, 869
SspI	AATATT	2 cut(s)	221, 441
SspMI	CTAG	2 cut(s)	662, 803
StyD4I	CCNGG	2 cut(s)	92, 710
StyI	CCWWGG	5 cut(s)	186, 280, 742, 802, 940
TaaI	ACNGT	1 cut(s)	262
TaiI	ACGT	1 cut(s)	709
TaqI	TCGA	3 cut(s)	56, 117, 378
TasI	AATT	6 cut(s)	49, 458, 480, 515, 945, 988
TfiI	GAWTC	4 cut(s)	413, 653, 817, 911
Tru1I	TTAA	3 cut(s)	554, 794, 929
Tru9I	TTAA	3 cut(s)	554, 794, 929
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	3 cut(s)	150, 886, 935
TseI	GCWGC	3 cut(s)	5, 758, 836
Tsp45I	GTSAC	3 cut(s)	150, 886, 935
TspDTI	ATGAA	1 cut(s)	312
TspRI	CASTG	1 cut(s)	313
Van91I	CCANNNNNTGG	1 cut(s)	223
Vha464I	CTTAAG	1 cut(s)	553
XapI	RAATTY	3 cut(s)	480, 945, 988
XceI	RCATGY	1 cut(s)	596
XhoI	CTCGAG	1 cut(s)	55
XmaJI	CCTAGG	1 cut(s)	802
XmiI	GTMKAC	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	315
XspI	CTAG	2 cut(s)	662, 803
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.