Rh5CG380600

Plant nuclear matrix protein 1 (NMP1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0003865
Physical Location & Seq
Forward (+)
49748234 .. 49751917
3684 bp
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UTR
Exon/CDS
Intron
Rh5CG380600.1

Sequence Viewer

Length: 552 bp
ATGGAACGCTACGCTCTTTTTGAGCGTGGCTCTTCTTCCGAGACTGCCCGCATTCAGTATTTGGCAGAGATTGCAAAGTTTCTGGGCATTACGAATACAATAGACACAGAAGCCATCCAAGGACGAGGAAGCTACGAAGATCGTACTGAAATGCTTCGTCTAATTGTAGATCTTGTGGAGGCAAGCATTTTTGCTGATAATCAAGAATGGAGTATTGATGAGCAGGTAACAAAGGATATACAACTGATTGATTCCATTGCTGAAAAGCAAGCTCAAATGTTCTCTGAAGATTGCAAATTGTTTCCTGCTGATGTTCAGATTCAAGCTATATATCCATTACCTAATGTTTCTGAGCTGGAGCAGAAGCTTTCAGAACAATCCAAGACTCTCTTACATCTTCAACAAAAGGTTGATGATTTGGCATCAAAGCATGCTTACAACCCACATGAGGAGTATGCATATGTTGAATCCACATTGCGTTCGCATTTGGAATCTTTTCTAGAAACTGCAAGATCATTCAATATGATTTACACCAAGGAAATACGTCCCTGA

Protein Analysis

183

Amino Acids

21.1

Weight (kDa)

4.66

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_NMP1 PF06694 13 - 183 4.3e-94 Plant nuclear matrix protein 1 (NMP1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 214
AciI CCGC 1 cut(s) 49
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 1 cut(s) 145
AfiI CCNNNNNNNGG 1 cut(s) 448
AgsI TTSAA 4 cut(s) 323, 401, 467, 520
AluBI AGCT 5 cut(s) 132, 272, 326, 355, 367
AluI AGCT 5 cut(s) 132, 272, 326, 355, 367
Alw26I GTCTC 1 cut(s) 35
Asp700I GAANNNNTTC 2 cut(s) 153, 495
BccI CCATC 1 cut(s) 122
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 1 cut(s) 500
BfuAI ACCTGC 1 cut(s) 214
BglII AGATCT 1 cut(s) 169
BmsI GCATC 1 cut(s) 431
BplI GAGNNNNNCTC 2 cut(s) 14, 46
BpmI CTGGAG 1 cut(s) 377
BsaJI CCNNGG 2 cut(s) 118, 534
Bsc4I CCNNNNNNNGG 1 cut(s) 448
Bse3DI GCAATG 2 cut(s) 255, 473
BseDI CCNNGG 2 cut(s) 118, 534
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 448
BseMI GCAATG 2 cut(s) 255, 473
BseMII CTCAG 1 cut(s) 342
BseRI GAGGAG 1 cut(s) 464
BslFI GGGAC 1 cut(s) 531
BslI CCNNNNNNNGG 1 cut(s) 448
BsmAI GTCTC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 531
BsmI GAATGC 1 cut(s) 51
Bsp143I GATC 3 cut(s) 139, 169, 512
BspACI CCGC 1 cut(s) 49
BspCNI CTCAG 1 cut(s) 343
BspMI ACCTGC 1 cut(s) 214
BspQI GCTCTTC 1 cut(s) 37
BsrDI GCAATG 2 cut(s) 255, 473
BssECI CCNNGG 2 cut(s) 118, 534
BssMI GATC 3 cut(s) 139, 169, 512
BssT1I CCWWGG 2 cut(s) 118, 534
Bst6I CTCTTC 1 cut(s) 37
BstAPI GCANNNNNTGC 1 cut(s) 71
BstC8I GCNNGC 4 cut(s) 49, 184, 270, 432
BstDEI CTNAG 1 cut(s) 351
BstF5I GGATG 1 cut(s) 114
BstKTI GATC 3 cut(s) 142, 172, 515
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 3 cut(s) 139, 169, 512
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNSI RCATGY 1 cut(s) 434
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BtsCI GGATG 1 cut(s) 114
BveI ACCTGC 1 cut(s) 214
Cac8I GCNNGC 4 cut(s) 49, 184, 270, 432
Csp6I GTAC 1 cut(s) 144
CviAII CATG 2 cut(s) 431, 446
CviJI RGCY 7 cut(s) 30, 113, 132, 272, 326, 355, 367
CviKI_1 RGCY 7 cut(s) 30, 113, 132, 272, 326, 355, 367
CviQI GTAC 1 cut(s) 144
DdeI CTNAG 1 cut(s) 351
DpnI GATC 3 cut(s) 141, 171, 514
DpnII GATC 3 cut(s) 139, 169, 512
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
Eco130I CCWWGG 2 cut(s) 118, 534
Eco57I CTGAAG 1 cut(s) 306
EcoT14I CCWWGG 2 cut(s) 118, 534
EcoT22I ATGCAT 1 cut(s) 460
ErhI CCWWGG 2 cut(s) 118, 534
FaeI CATG 2 cut(s) 434, 449
FaiI YATR 9 cut(s) 239, 329, 331, 432, 447, 456, 460, 462, 524
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FaqI GGGAC 1 cut(s) 531
FatI CATG 2 cut(s) 430, 445
FauI CCCGC 1 cut(s) 56
FauNDI CATATG 1 cut(s) 460
FokI GGATG 1 cut(s) 101
FspBI CTAG 1 cut(s) 500
GsuI CTGGAG 1 cut(s) 377
Hin1II CATG 2 cut(s) 434, 449
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 5 cut(s) 251, 319, 385, 467, 491
Hpy188I TCNGA 5 cut(s) 40, 286, 318, 352, 373
Hpy188III TCNNGA 2 cut(s) 203, 500
HpyCH4IV ACGT 1 cut(s) 544
HpyCH4V TGCA 4 cut(s) 74, 294, 458, 509
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 351
HpySE526I ACGT 1 cut(s) 544
Hsp92II CATG 2 cut(s) 434, 449
Kzo9I GATC 3 cut(s) 139, 169, 512
LguI GCTCTTC 1 cut(s) 37
LmnI GCTCC 1 cut(s) 358
LpnPI CCDG 4 cut(s) 68, 209, 318, 341
LweI GCATC 1 cut(s) 431
MaeI CTAG 1 cut(s) 500
MaeII ACGT 1 cut(s) 544
MaeIII GTNAC 1 cut(s) 226
MalI GATC 3 cut(s) 141, 171, 514
MboI GATC 3 cut(s) 139, 169, 512
MboII GAAGA 5 cut(s) 24, 27, 149, 299, 389
MflI RGATCY 1 cut(s) 169
MluCI AATT 2 cut(s) 162, 296
MlyI GAGTC 1 cut(s) 379
MnlI CCTC 3 cut(s) 119, 172, 442
Mph1103I ATGCAT 1 cut(s) 460
MroXI GAANNNNTTC 2 cut(s) 153, 495
Mva1269I GAATGC 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeI CATATG 1 cut(s) 460
NdeII GATC 3 cut(s) 139, 169, 512
NlaIII CATG 2 cut(s) 434, 449
NsiI ATGCAT 1 cut(s) 460
NspI RCATGY 1 cut(s) 434
PaeI GCATGC 1 cut(s) 434
PciSI GCTCTTC 1 cut(s) 37
PctI GAATGC 1 cut(s) 51
PdmI GAANNNNTTC 2 cut(s) 153, 495
PfeI GAWTC 4 cut(s) 251, 319, 467, 491
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
PsuI RGATCY 1 cut(s) 169
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
SapI GCTCTTC 1 cut(s) 37
Sau3AI GATC 3 cut(s) 139, 169, 512
SchI GAGTC 1 cut(s) 379
SetI ASST 9 cut(s) 134, 228, 274, 328, 343, 357, 369, 411, 547
SfaNI GCATC 1 cut(s) 431
SphI GCATGC 1 cut(s) 434
Sse9I AATT 2 cut(s) 162, 296
SsiI CCGC 1 cut(s) 49
SspMI CTAG 1 cut(s) 500
StyI CCWWGG 2 cut(s) 118, 534
TaiI ACGT 1 cut(s) 547
TasI AATT 2 cut(s) 162, 296
TfiI GAWTC 4 cut(s) 251, 319, 467, 491
XbaI TCTAGA 1 cut(s) 499
XceI RCATGY 1 cut(s) 434
XmnI GAANNNNTTC 2 cut(s) 153, 495
XspI CTAG 1 cut(s) 500
Zsp2I ATGCAT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.