Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003865

Physical Location & Seq

Genomic Coordinates Forward (+)

27973532 .. 27988072

Gene Structure 14541 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1233500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCCGCAAGACAAATGGAAGAGATACAGAGGAAGCTGGCGATGCTGAATTATCCCAGGGCCAATGCGGCTGCTCAGTCCCTCCTCTTCGCCGGCATGGAACGCTACGCCCTTCTCGAGTGGCTCTTCTTCCGATTGCTGGGGGAAAAGTCGCCGTTTTCTCAACAAAATCTTCAAGGGGACGCCATGGATCGTGACGAAGAGACTGCTCGAATCCAGTATTTGGCAGAGATTGCAAAGTTTTTGGGTATTACTACTACTATAGACACAGAAGCCATCCAAGGGCGAGGAAGCTATGAAGATCGTACTGAAATGCTTCATCTAATTGTAGATCTTGTGGAGGCAAGTATTTATGCTGATAATCAAGAATGGAGTATCGATGAGCAGGTAGCAAAGGACATACAACTAATTGATTCCATAGCTGAAAAACAAGCTCAAATATTCTCTGAAGAGTGCAAATTGTTCCCTGCAGACGTTCAGATTCAGTCCATATATCCATTGCCAGATGTTTCTGAATTGGAGAAAAAACTTTCAGAACAATCAAAGATATTCTTAAGCCTTCAACAGAAGGTTGACGATTTGGCTTCAAAGCATGCTTACAACCCTGATGAGGATTATGCAGAGGTGGAATCAAGATTGCGAAATACGTCCCTGGACACACATGATGGAGGAGTACCCCAGCTCCATGGGTTTGGGCCGGCTGCCAATCGATTGTTGGAGGCATACAAGATGCTTTTAAAGTTCCTGGGGAACTTGAGGAATCTTAGAGACTCATACGCAGCTCTTGCTGTTGGATCATCTGACTCAGTTGCTGGCGAGCCCTCATCAGTCACAAGAATAATCTCAGAGTGTGAATCTGCTTTGACATTCCTAAATCGCGACCTTGGGATTCTCTCGGCTTCCATTGCTCGCGAGCAAGGTGAGGAGGTGAGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0008017 GO:0008092 GO:0009524 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051011 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_NMP1

Protein Analysis

313

Amino Acids

34.93

Weight (kDa)

4.6

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_NMP1	PF06694	6 - 215	1.7e-124	Plant nuclear matrix protein 1 (NMP1)
Plant_NMP1	PF06694	220 - 305	2.6e-40	Plant nuclear matrix protein 1 (NMP1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17620
fragaria_vesca	FvH4_3g28610 FvH4_7g07660 FvH4_7g07660 FvH4_7g07660 FvH4_7g07660
malus_domestica	MD02G1233500.v1.1 MD07G1080100.v1.1
prunus_persica	Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1 Prupe.2G104100_v2.0.a1
pyrus_communis	pycom07g06370
rosa_chinensis	RchiOBHm_Chr1g0342701
rosa_laevigata	RLG00000029168 RLG00000029187
rosa_multiflora	Rmu_sc0000173.1_g000040
rosa_roxburghii	Rroxscaffold_4G00313150
rosa_rugosa	Rorug01G0146700.1 Rorug05G0271600
rosa_samantha	Rh1AG163400 Rh1AG164900 Rh1BG131200 Rh1CG153600 Rh1DG166200 Rh5CG380600
rosa_wichuraiana	Rw0G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	376
AccB7I	CCANNNNNTGG	1 cut(s)	223
AccII	CGCG	2 cut(s)	879, 912
AciI	CCGC	2 cut(s)	6, 68
AclWI	GGATC	2 cut(s)	198, 802
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	468
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	2 cut(s)	307, 675
AfiI	CCNNNNNNNGG	4 cut(s)	139, 223, 282, 610
AflII	CTTAAG	1 cut(s)	553
AgsI	TTSAA	3 cut(s)	176, 563, 588
AjnI	CCWGG	3 cut(s)	56, 651, 744
AluBI	AGCT	6 cut(s)	37, 294, 422, 434, 682, 782
AluI	AGCT	6 cut(s)	37, 294, 422, 434, 682, 782
Alw26I	GTCTC	2 cut(s)	197, 762
AlwI	GGATC	2 cut(s)	198, 802
AlwNI	CAGNNNCTG	1 cut(s)	812
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	3 cut(s)	3, 60, 695
ApeKI	GCWGC	3 cut(s)	71, 701, 779
Asp700I	GAANNNNTTC	1 cut(s)	315
AspS9I	GGNCC	2 cut(s)	60, 695
AsuHPI	GGTGA	1 cut(s)	932
AvaI	CYCGRG	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	822
BbvI	GCAGC	3 cut(s)	58, 688, 791
BccI	CCATC	2 cut(s)	284, 659
BceAI	ACGGC	1 cut(s)	139
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BciT130I	CCWGG	3 cut(s)	58, 653, 746
BcoDI	GTCTC	2 cut(s)	197, 762
BfmI	CTRYAG	2 cut(s)	261, 468
BfrI	CTTAAG	1 cut(s)	553
BfuAI	ACCTGC	1 cut(s)	376
BglI	GCCNNNNNGGC	1 cut(s)	68
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	5 cut(s)	6, 69, 72, 702, 780
BlsI	GCNGC	5 cut(s)	7, 70, 73, 703, 781
Bme1390I	CCNGG	3 cut(s)	58, 653, 746
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	2 cut(s)	60, 695
BmrFI	CCNGG	3 cut(s)	58, 653, 746
BmsI	GCATC	2 cut(s)	33, 720
BpuEI	CTTGAG	1 cut(s)	775
Bsa29I	ATCGAT	2 cut(s)	378, 709
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	8 cut(s)	56, 57, 186, 280, 651, 685, 745, 883
BsaXI	ACNNNNNCTCC	2 cut(s)	666, 696
Bsc4I	CCNNNNNNNGG	4 cut(s)	139, 223, 282, 610
Bse118I	RCCGGY	2 cut(s)	92, 697
Bse1I	ACTGG	1 cut(s)	217
Bse3DI	GCAATG	2 cut(s)	497, 903
BseBI	CCWGG	3 cut(s)	58, 653, 746
BseCI	ATCGAT	2 cut(s)	378, 709
BseDI	CCNNGG	8 cut(s)	56, 57, 186, 280, 651, 685, 745, 883
BseGI	GGATG	1 cut(s)	276
BseLI	CCNNNNNNNGG	4 cut(s)	139, 223, 282, 610
BseMI	GCAATG	2 cut(s)	497, 903
BseMII	CTCAG	3 cut(s)	89, 819, 858
BseNI	ACTGG	1 cut(s)	217
BseRI	GAGGAG	3 cut(s)	74, 684, 938
BseXI	GCAGC	3 cut(s)	58, 688, 791
BseYI	CCCAGC	2 cut(s)	139, 678
Bsh1236I	CGCG	2 cut(s)	879, 912
BshFI	GGCC	3 cut(s)	5, 62, 697
BshVI	ATCGAT	2 cut(s)	378, 709
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	2 cut(s)	93, 698
BslFI	GGGAC	3 cut(s)	64, 194, 634
BslI	CCNNNNNNNGG	4 cut(s)	139, 223, 282, 610
BsmAI	GTCTC	2 cut(s)	197, 762
BsmFI	GGGAC	3 cut(s)	64, 194, 634
BsnI	GGCC	3 cut(s)	5, 62, 697
BsoBI	CYCGRG	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	822
Bsp143I	GATC	4 cut(s)	190, 301, 331, 794
Bsp19I	CCATGG	2 cut(s)	186, 685
Bsp68I	TCGCGA	2 cut(s)	879, 912
BspACI	CCGC	2 cut(s)	6, 68
BspANI	GGCC	3 cut(s)	5, 62, 697
BspCNI	CTCAG	3 cut(s)	88, 818, 857
BspDI	ATCGAT	2 cut(s)	378, 709
BspFNI	CGCG	2 cut(s)	879, 912
BspMAI	CTGCAG	1 cut(s)	472
BspMI	ACCTGC	1 cut(s)	376
BspPI	GGATC	2 cut(s)	198, 802
BspQI	GCTCTTC	1 cut(s)	131
BspTI	CTTAAG	1 cut(s)	553
BsrDI	GCAATG	2 cut(s)	497, 903
BsrFI	RCCGGY	2 cut(s)	92, 697
BsrI	ACTGG	1 cut(s)	217
BssAI	RCCGGY	2 cut(s)	92, 697
BssECI	CCNNGG	8 cut(s)	56, 57, 186, 280, 651, 685, 745, 883
BssMI	GATC	4 cut(s)	190, 301, 331, 794
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	4 cut(s)	186, 280, 685, 883
Bst2UI	CCWGG	3 cut(s)	58, 653, 746
Bst6I	CTCTTC	5 cut(s)	15, 92, 131, 195, 444
BstACI	GRCGYC	1 cut(s)	183
BstAFI	CTTAAG	1 cut(s)	553
BstAPI	GCANNNNNTGC	2 cut(s)	233, 785
BstC8I	GCNNGC	8 cut(s)	39, 94, 594, 699, 814, 818, 910, 914
BstDEI	CTNAG	4 cut(s)	75, 764, 805, 844
BstDSI	CCRYGG	2 cut(s)	186, 685
BstF5I	GGATG	1 cut(s)	276
BstFNI	CGCG	2 cut(s)	879, 912
BstKTI	GATC	4 cut(s)	193, 304, 334, 797
BstMAI	GTCTC	2 cut(s)	197, 762
BstMBI	GATC	4 cut(s)	190, 301, 331, 794
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 68, 102, 233, 785, 905
BstNI	CCWGG	3 cut(s)	58, 653, 746
BstNSI	RCATGY	1 cut(s)	596
BstSCI	CCNGG	3 cut(s)	56, 651, 744
BstSFI	CTRYAG	2 cut(s)	261, 468
BstUI	CGCG	2 cut(s)	879, 912
BstV1I	GCAGC	3 cut(s)	58, 688, 791
BstX2I	RGATCY	1 cut(s)	331
BstXI	CCANNNNNNTGG	2 cut(s)	686, 692
BstYI	RGATCY	1 cut(s)	331
Bsu15I	ATCGAT	2 cut(s)	378, 709
BsuRI	GGCC	3 cut(s)	5, 62, 697
BsuTUI	ATCGAT	2 cut(s)	378, 709
BtgI	CCRYGG	2 cut(s)	186, 685
BtgZI	GCGATG	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	276
BtuMI	TCGCGA	2 cut(s)	879, 912
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	8 cut(s)	39, 94, 594, 699, 814, 818, 910, 914
CaiI	CAGNNNCTG	1 cut(s)	812
Cfr10I	RCCGGY	2 cut(s)	92, 697
Cfr13I	GGNCC	2 cut(s)	60, 695
ClaI	ATCGAT	2 cut(s)	378, 709
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	2 cut(s)	306, 674
CviAII	CATG	5 cut(s)	97, 187, 593, 662, 686
CviQI	GTAC	2 cut(s)	306, 674
DdeI	CTNAG	4 cut(s)	75, 764, 805, 844
DpnI	GATC	4 cut(s)	192, 303, 333, 796
DpnII	GATC	4 cut(s)	190, 301, 331, 794
DraI	TTTAAA	1 cut(s)	738
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	5 cut(s)	15, 92, 131, 195, 444
EarI	CTCTTC	5 cut(s)	15, 92, 131, 195, 444
Eco130I	CCWWGG	4 cut(s)	186, 280, 685, 883
Eco24I	GRGCYC	1 cut(s)	822
Eco57I	CTGAAG	1 cut(s)	468
Eco88I	CYCGRG	1 cut(s)	116
EcoRII	CCWGG	3 cut(s)	56, 651, 744
EcoT14I	CCWWGG	4 cut(s)	186, 280, 685, 883
EcoT38I	GRGCYC	1 cut(s)	822
ErhI	CCWWGG	4 cut(s)	186, 280, 685, 883
FaeI	CATG	5 cut(s)	100, 190, 596, 665, 689
FalI	AAGNNNNNCTT	2 cut(s)	536, 568
FaqI	GGGAC	3 cut(s)	64, 194, 634
FatI	CATG	5 cut(s)	96, 186, 592, 661, 685
Fnu4HI	GCNGC	5 cut(s)	6, 69, 72, 702, 780
FokI	GGATG	1 cut(s)	263
FriOI	GRGCYC	1 cut(s)	822
Fsp4HI	GCNGC	5 cut(s)	6, 69, 72, 702, 780
GluI	GCNGC	5 cut(s)	6, 69, 72, 702, 780
GsaI	CCCAGC	2 cut(s)	143, 682
HaeIII	GGCC	3 cut(s)	5, 62, 697
HapII	CCGG	2 cut(s)	93, 698
HgaI	GACGC	1 cut(s)	191
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	5 cut(s)	100, 190, 596, 665, 689
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HinfI	GANTC	9 cut(s)	213, 413, 481, 629, 760, 770, 803, 854, 889
HpaII	CCGG	2 cut(s)	93, 698
HphI	GGTGA	1 cut(s)	932
Hpy166II	GTNNAC	1 cut(s)	574
Hpy188I	TCNGA	7 cut(s)	134, 448, 480, 514, 535, 802, 847
Hpy188III	TCNNGA	6 cut(s)	116, 194, 365, 633, 878, 911
Hpy8I	GTNNAC	1 cut(s)	574
HpyAV	CCTTC	3 cut(s)	122, 562, 569
HpyCH4IV	ACGT	2 cut(s)	474, 647
HpyCH4V	TGCA	4 cut(s)	236, 456, 470, 620
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 68, 102, 233, 785, 905
HpyF3I	CTNAG	4 cut(s)	75, 764, 805, 844
HpySE526I	ACGT	2 cut(s)	474, 647
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	5 cut(s)	100, 190, 596, 665, 689
KroI	GCCGGC	2 cut(s)	92, 697
KroNI	GCCGGC	2 cut(s)	94, 699
Kzo9I	GATC	4 cut(s)	190, 301, 331, 794
LguI	GCTCTTC	1 cut(s)	131
LmnI	GCTCC	1 cut(s)	687
Lsp1109I	GCAGC	3 cut(s)	58, 688, 791
LweI	GCATC	2 cut(s)	33, 720
MaeII	ACGT	2 cut(s)	474, 647
MaeIII	GTNAC	2 cut(s)	194, 829
MalI	GATC	4 cut(s)	192, 303, 333, 796
MboI	GATC	4 cut(s)	190, 301, 331, 794
MboII	GAAGA	8 cut(s)	32, 79, 118, 121, 164, 212, 311, 461
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	822
MluCI	AATT	5 cut(s)	49, 324, 408, 458, 515
MlyI	GAGTC	2 cut(s)	764, 797
MmeI	TCCRAC	2 cut(s)	696, 772
MroNI	GCCGGC	2 cut(s)	92, 697
MroXI	GAANNNNTTC	1 cut(s)	315
MseI	TTAA	2 cut(s)	554, 737
MspCI	CTTAAG	1 cut(s)	553
MspI	CCGG	2 cut(s)	93, 698
MspR9I	CCNGG	3 cut(s)	58, 653, 746
MvaI	CCWGG	3 cut(s)	58, 653, 746
MvnI	CGCG	2 cut(s)	879, 912
MwoI	GCNNNNNNNGC	6 cut(s)	43, 68, 102, 233, 785, 905
NaeI	GCCGGC	2 cut(s)	94, 699
NcoI	CCATGG	2 cut(s)	186, 685
NdeII	GATC	4 cut(s)	190, 301, 331, 794
NgoMIV	GCCGGC	2 cut(s)	92, 697
NlaIII	CATG	5 cut(s)	100, 190, 596, 665, 689
NmeAIII	GCCGAG	1 cut(s)	875
NmuCI	GTSAC	2 cut(s)	194, 829
NruI	TCGCGA	2 cut(s)	879, 912
NspI	RCATGY	1 cut(s)	596
PaeI	GCATGC	1 cut(s)	596
PaeR7I	CTCGAG	1 cut(s)	116
PasI	CCCWGGG	1 cut(s)	57
PciSI	GCTCTTC	1 cut(s)	131
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PdiI	GCCGGC	2 cut(s)	94, 699
PdmI	GAANNNNTTC	1 cut(s)	315
PfeI	GAWTC	7 cut(s)	213, 413, 481, 629, 760, 854, 889
PflMI	CCANNNNNTGG	1 cut(s)	223
PkrI	GCNGC	5 cut(s)	7, 70, 73, 703, 781
PleI	GAGTC	2 cut(s)	764, 797
PpsI	GAGTC	2 cut(s)	764, 797
Psp6I	CCWGG	3 cut(s)	56, 651, 744
PspFI	CCCAGC	2 cut(s)	139, 678
PspGI	CCWGG	3 cut(s)	56, 651, 744
PspPI	GGNCC	2 cut(s)	60, 695
PstI	CTGCAG	1 cut(s)	472
PstNI	CAGNNNCTG	1 cut(s)	812
PsuI	RGATCY	1 cut(s)	331
RruI	TCGCGA	2 cut(s)	879, 912
RsaI	GTAC	2 cut(s)	307, 675
RsaNI	GTAC	2 cut(s)	306, 674
SapI	GCTCTTC	1 cut(s)	131
SaqAI	TTAA	2 cut(s)	554, 737
SatI	GCNGC	5 cut(s)	6, 69, 72, 702, 780
Sau3AI	GATC	4 cut(s)	190, 301, 331, 794
Sau96I	GGNCC	2 cut(s)	60, 695
SchI	GAGTC	2 cut(s)	764, 797
ScrFI	CCNGG	3 cut(s)	58, 653, 746
SduI	GDGCHC	1 cut(s)	822
SfaNI	GCATC	2 cut(s)	33, 720
SfcI	CTRYAG	2 cut(s)	261, 468
Sfr274I	CTCGAG	1 cut(s)	116
SlaI	CTCGAG	1 cut(s)	116
SmlI	CTYRAG	3 cut(s)	116, 553, 754
SmoI	CTYRAG	3 cut(s)	116, 553, 754
SphI	GCATGC	1 cut(s)	596
Sse9I	AATT	5 cut(s)	49, 324, 408, 458, 515
SsiI	CCGC	2 cut(s)	6, 68
SspI	AATATT	1 cut(s)	441
StyD4I	CCNGG	3 cut(s)	56, 651, 744
StyI	CCWWGG	4 cut(s)	186, 280, 685, 883
TaiI	ACGT	2 cut(s)	477, 650
TaqI	TCGA	4 cut(s)	117, 211, 378, 709
TasI	AATT	5 cut(s)	49, 324, 408, 458, 515
TauI	GCSGC	2 cut(s)	8, 71
TfiI	GAWTC	7 cut(s)	213, 413, 481, 629, 760, 854, 889
Tru1I	TTAA	2 cut(s)	554, 737
Tru9I	TTAA	2 cut(s)	554, 737
TseFI	GTSAC	2 cut(s)	194, 829
TseI	GCWGC	3 cut(s)	71, 701, 779
Tsp45I	GTSAC	2 cut(s)	194, 829
TspDTI	ATGAA	2 cut(s)	308, 312
Van91I	CCANNNNNTGG	1 cut(s)	223
Vha464I	CTTAAG	1 cut(s)	553
XceI	RCATGY	1 cut(s)	596
XcmI	CCANNNNNNNNNTGG	1 cut(s)	712
XhoI	CTCGAG	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.