Rorug05G0271600

Serine threonine-protein phosphatase 7 long form homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003095
Physical Location & Seq
Reverse (-)
30625065 .. 30633780
8716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0271600.1

Sequence Viewer

Length: 1362 bp
ATGGCTGCACGTGTAGCCACAGTCTTTGCTTCTTTAAGGGAATTTCCTATTGTTCGCTACCGAGCTGCCAATAGGATTGATGCCACCATGGAGACCACTTTTCGTGATTTAATTCCTACAAAGCTTGCTGCTGCTGTCTGGGATTGTCTCATGCATTACAAAAGAACAATTCCAAATTTCCCTCAGATAGAAACATGCGAGTTACTTATCCTTGACAGATCTGTGGATCAGATTGCGCCAATCATCCATGAGTGGACATACGATGCCTTGTGTCATGACTTGTTAGATATGGAAGGAAATAAATATGTGCATGAGGTTGCGAGCATAAACGGTGGTCTTCCTGACAAGAAGGATGTTCTTCTAGAGGAGCGTGATCCTGTCTGGCTTGAACTTCGCGATCATCATTTAGGATTTGCCTTGGAATGGTTGAATTCGAAACTTTCCAATCTTAAGCAGAACAAGGCTGCACAATTCGAAAATTCAAGAGATGGGCAATGTCCTGAGCTATCTTCAAGGGAATTGAAAGAGTTAACTGAAGCATTGCCACAGTATGTTGAACTAAAAGAAAAGCTCTCCCTTCATATAGAGATTGCATCGAAACTAAACAGAATTGTCAGGAACCTTGAGCTCCCATTCCTTTCGGAGCTGGAGCAGGGTCTTGTTTTTGGAGATGCAAGAATAAAAGAGGTGATCATGTTTCTGAGAATACATGGGCCGTATATTACTCGCGAACATAAGCTGCGCTTGTTGATGATTCTTGCTGCCATCTATCCTGAGAAATTTGAGGATGAAGAAGATCTACATATGATGATGAAGTACGCATATTTACTACCCCAGGATATGACTGTTGTGAGGAATATGAAGTTGATTGGGGAGAGCAGAGAAGGCTCATCTGGAATTTTTCCTCTGAAGTTTGGTATTGCTAAGAGAAAATGTTATAGGAAAGAGCGTCCAAGAGAAGATGAATGGCTTTATTCACGCTTTTTTCCGATGATAGAGGAACTTATAGAAAAGCTTAGCAATGGTGCACTGTCAGAGGAATTATATCCATGTGTGAATCCCAACGCTCGTTTACTGAGATCGAGGAGGACACCAATGTGGGCCCACCGTCGGAATTCCGAGAATGGGCTTTCAAGGGATGCATCTACTGATTTCGAAAAGATGGGCCGACGCATATTTGTAGTTATAGTAGGTGGAGCTACTAGATCAGAGCTTAGGGTTTGTCGGAAACTCACAGCAAAGCTCAAAAGGGAAGTTATTCTGGGCTCCTCATCTCTTGACGATCCTGCAACTTTTGTTACGAATCTGAAAATGATCACAGCAGACGACCAACCGCTCACGTTGGATGATATCCAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

453

Amino Acids

52.45

Weight (kDa)

6.46

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec1 PF00995 1 - 434 1.3e-74 Sec1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1336
AccII CGCG 2 cut(s) 396, 729
AciI CCGC 1 cut(s) 1334
AclWI GGATC 3 cut(s) 234, 368, 1277
AcsI RAATTY 7 cut(s) 41, 175, 430, 478, 779, 897, 1114
AcuI CTGAAG 2 cut(s) 555, 929
AcvI CACGTG 1 cut(s) 11
AfaI GTAC 1 cut(s) 818
AfiI CCNNNNNNNGG 3 cut(s) 423, 1110, 1125
AflII CTTAAG 1 cut(s) 449
AflIII ACRYGT 1 cut(s) 10
AgsI TTSAA 7 cut(s) 389, 430, 483, 513, 523, 557, 1134
AjnI CCWGG 1 cut(s) 834
AleI CACNNNNGTG 1 cut(s) 1096
Alw21I GWGCWC 2 cut(s) 630, 1030
Alw26I GTCTC 2 cut(s) 86, 152
Alw44I GTGCAC 1 cut(s) 1026
AlwI GGATC 3 cut(s) 234, 368, 1277
AoxI GGCC 3 cut(s) 713, 1101, 1165
ApaI GGGCCC 1 cut(s) 1105
ApaLI GTGCAC 1 cut(s) 1026
ApeKI GCWGC 7 cut(s) 5, 65, 128, 131, 464, 739, 761
ApoI RAATTY 7 cut(s) 41, 175, 430, 478, 779, 897, 1114
Asp700I GAANNNNTTC 1 cut(s) 1257
AspLEI GCGC 2 cut(s) 238, 744
AspS9I GGNCC 4 cut(s) 713, 1101, 1102, 1165
AsuHPI GGTGA 1 cut(s) 700
AsuII TTCGAA 3 cut(s) 434, 474, 1155
BaeGI GKGCMC 2 cut(s) 1030, 1105
BanII GRGCYC 3 cut(s) 630, 1105, 1268
BarI GAAGNNNNNNTAC 2 cut(s) 783, 815
BbrPI CACGTG 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 329
Bbv12I GWGCWC 2 cut(s) 630, 1030
BbvI GCAGC 6 cut(s) 52, 115, 118, 451, 726, 748
BccI CCATC 3 cut(s) 482, 773, 1156
BceAI ACGGC 1 cut(s) 700
BciT130I CCWGG 1 cut(s) 836
BclI TGATCA 2 cut(s) 690, 1314
BcoDI GTCTC 2 cut(s) 86, 152
BfaI CTAG 2 cut(s) 362, 1203
BfrI CTTAAG 1 cut(s) 449
BglII AGATCT 3 cut(s) 218, 796, 1356
BisI GCNGC 7 cut(s) 6, 66, 129, 132, 465, 740, 762
BlpI GCTNAGC 1 cut(s) 1016
BlsI GCNGC 7 cut(s) 7, 67, 130, 133, 466, 741, 763
Bme1390I CCNGG 1 cut(s) 836
BmgT120I GGNCC 4 cut(s) 713, 1101, 1102, 1165
BmiI GGNNCC 3 cut(s) 620, 1103, 1267
BmrFI CCNGG 1 cut(s) 836
BmsI GCATC 6 cut(s) 70, 253, 602, 661, 1129, 1151
BpiI GAAGAC 1 cut(s) 329
BpmI CTGGAG 1 cut(s) 668
Bpu10I CCTNAGC 2 cut(s) 501, 1214
Bpu1102I GCTNAGC 1 cut(s) 1016
Bpu14I TTCGAA 3 cut(s) 434, 474, 1155
BpuEI CTTGAG 1 cut(s) 644
BsaAI YACGTR 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 3 cut(s) 87, 417, 834
Bsc4I CCNNNNNNNGG 3 cut(s) 423, 1110, 1125
Bse3DI GCAATG 3 cut(s) 500, 539, 1027
BseBI CCWGG 1 cut(s) 836
BseDI CCNNGG 3 cut(s) 87, 417, 834
BseGI GGATG 5 cut(s) 243, 358, 793, 1144, 1351
BseLI CCNNNNNNNGG 3 cut(s) 423, 1110, 1125
BseMI GCAATG 3 cut(s) 500, 539, 1027
BseMII CTCAG 5 cut(s) 197, 492, 692, 765, 1067
BseRI GAGGAG 3 cut(s) 380, 1099, 1258
BseSI GKGCMC 2 cut(s) 1030, 1105
BseXI GCAGC 6 cut(s) 52, 115, 118, 451, 726, 748
BsgI GTGCAG 1 cut(s) 450
Bsh1236I CGCG 2 cut(s) 396, 729
BshFI GGCC 3 cut(s) 715, 1103, 1167
BsiHKAI GWGCWC 2 cut(s) 630, 1030
BslI CCNNNNNNNGG 3 cut(s) 423, 1110, 1125
BsmAI GTCTC 2 cut(s) 86, 152
BsnI GGCC 3 cut(s) 715, 1103, 1167
Bso31I GGTCTC 1 cut(s) 86
Bsp119I TTCGAA 3 cut(s) 434, 474, 1155
Bsp120I GGGCCC 1 cut(s) 1101
Bsp1286I GDGCHC 4 cut(s) 630, 1030, 1105, 1268
Bsp1720I GCTNAGC 1 cut(s) 1016
Bsp19I CCATGG 1 cut(s) 87
Bsp68I TCGCGA 2 cut(s) 396, 729
BspACI CCGC 1 cut(s) 1334
BspANI GGCC 3 cut(s) 715, 1103, 1167
BspCNI CTCAG 5 cut(s) 196, 493, 693, 766, 1068
BspFNI CGCG 2 cut(s) 396, 729
BspHI TCATGA 1 cut(s) 274
BspLI GGNNCC 3 cut(s) 620, 1103, 1267
BspPI GGATC 3 cut(s) 234, 368, 1277
BspT104I TTCGAA 3 cut(s) 434, 474, 1155
BspTI CTTAAG 1 cut(s) 449
BspTNI GGTCTC 1 cut(s) 86
BsrBI CCGCTC 1 cut(s) 1336
BsrDI GCAATG 3 cut(s) 500, 539, 1027
BssECI CCNNGG 3 cut(s) 87, 417, 834
BssT1I CCWWGG 2 cut(s) 87, 417
Bst2UI CCWGG 1 cut(s) 836
Bst4CI ACNGT 6 cut(s) 22, 332, 549, 847, 1032, 1109
BstAFI CTTAAG 1 cut(s) 449
BstBAI YACGTR 1 cut(s) 11
BstBI TTCGAA 3 cut(s) 434, 474, 1155
BstC8I GCNNGC 2 cut(s) 126, 322
BstDEI CTNAG 8 cut(s) 183, 501, 701, 774, 924, 1016, 1076, 1214
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 5 cut(s) 243, 358, 793, 1144, 1351
BstFNI CGCG 2 cut(s) 396, 729
BstHHI GCGC 2 cut(s) 238, 744
BstMAI GTCTC 2 cut(s) 86, 152
BstMWI GCNNNNNNNGC 2 cut(s) 14, 885
BstNI CCWGG 1 cut(s) 836
BstNSI RCATGY 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 834
BstSLI GKGCMC 2 cut(s) 1030, 1105
BstUI CGCG 2 cut(s) 396, 729
BstV1I GCAGC 6 cut(s) 52, 115, 118, 451, 726, 748
BstV2I GAAGAC 1 cut(s) 329
BstX2I RGATCY 3 cut(s) 218, 796, 1356
BstYI RGATCY 3 cut(s) 218, 796, 1356
BsuRI GGCC 3 cut(s) 715, 1103, 1167
BtgI CCRYGG 1 cut(s) 87
BtsCI GGATG 5 cut(s) 243, 358, 793, 1144, 1351
BtsIMutI CAGTG 1 cut(s) 1028
BtuMI TCGCGA 2 cut(s) 396, 729
Cac8I GCNNGC 2 cut(s) 126, 322
CciI TCATGA 1 cut(s) 274
CfoI GCGC 2 cut(s) 238, 744
Cfr13I GGNCC 4 cut(s) 713, 1101, 1102, 1165
CseI GACGC 2 cut(s) 938, 1179
Csp6I GTAC 1 cut(s) 817
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 9 cut(s) 88, 151, 195, 248, 275, 311, 694, 710, 1050
CviQI GTAC 1 cut(s) 817
DdeI CTNAG 8 cut(s) 183, 501, 701, 774, 924, 1016, 1076, 1214
Ecl136II GAGCTC 1 cut(s) 628
Eco130I CCWWGG 2 cut(s) 87, 417
Eco24I GRGCYC 3 cut(s) 630, 1105, 1268
Eco31I GGTCTC 1 cut(s) 86
Eco32I GATATC 1 cut(s) 1351
Eco53kI GAGCTC 1 cut(s) 628
Eco57I CTGAAG 2 cut(s) 555, 929
Eco72I CACGTG 1 cut(s) 11
EcoICRI GAGCTC 1 cut(s) 628
EcoRI GAATTC 2 cut(s) 430, 1114
EcoRII CCWGG 1 cut(s) 834
EcoRV GATATC 1 cut(s) 1351
EcoT14I CCWWGG 2 cut(s) 87, 417
EcoT22I ATGCAT 2 cut(s) 156, 1144
EcoT38I GRGCYC 3 cut(s) 630, 1105, 1268
ErhI CCWWGG 2 cut(s) 87, 417
FaeI CATG 9 cut(s) 91, 154, 198, 251, 278, 314, 697, 713, 1053
FalI AAGNNNNNCTT 2 cut(s) 728, 760
FatI CATG 9 cut(s) 87, 150, 194, 247, 274, 310, 693, 709, 1049
FauNDI CATATG 1 cut(s) 804
FbaI TGATCA 2 cut(s) 690, 1314
Fnu4HI GCNGC 7 cut(s) 6, 66, 129, 132, 465, 740, 762
FokI GGATG 5 cut(s) 230, 365, 800, 1151, 1358
FriOI GRGCYC 3 cut(s) 630, 1105, 1268
Fsp4HI GCNGC 7 cut(s) 6, 66, 129, 132, 465, 740, 762
FspBI CTAG 2 cut(s) 362, 1203
GlaI GCGC 2 cut(s) 237, 743
GluI GCNGC 7 cut(s) 6, 66, 129, 132, 465, 740, 762
GsuI CTGGAG 1 cut(s) 668
HaeIII GGCC 3 cut(s) 715, 1103, 1167
HgaI GACGC 2 cut(s) 938, 1179
HhaI GCGC 2 cut(s) 238, 744
Hin1II CATG 9 cut(s) 91, 154, 198, 251, 278, 314, 697, 713, 1053
Hin6I GCGC 2 cut(s) 236, 742
HinP1I GCGC 2 cut(s) 236, 742
HincII GTYRAC 1 cut(s) 531
HindII GTYRAC 1 cut(s) 531
HindIII AAGCTT 2 cut(s) 122, 1013
HinfI GANTC 3 cut(s) 754, 1057, 1303
HpaI GTTAAC 1 cut(s) 531
HphI GGTGA 1 cut(s) 700
Hpy166II GTNNAC 4 cut(s) 255, 531, 1028, 1073
Hpy8I GTNNAC 4 cut(s) 255, 531, 1028, 1073
Hpy99I CGWCG 2 cut(s) 1113, 1173
HpyAV CCTTC 4 cut(s) 287, 343, 587, 878
HpyCH4III ACNGT 6 cut(s) 22, 332, 549, 847, 1032, 1109
HpyCH4IV ACGT 2 cut(s) 10, 1340
HpyCH4V TGCA 9 cut(s) 8, 154, 310, 467, 593, 674, 1028, 1142, 1289
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 885
HpyF3I CTNAG 8 cut(s) 183, 501, 701, 774, 924, 1016, 1076, 1214
HpySE526I ACGT 2 cut(s) 10, 1340
Hsp92II CATG 9 cut(s) 91, 154, 198, 251, 278, 314, 697, 713, 1053
HspAI GCGC 2 cut(s) 236, 742
Ksp22I TGATCA 2 cut(s) 690, 1314
KspAI GTTAAC 1 cut(s) 531
LmnI GCTCC 6 cut(s) 367, 633, 643, 649, 1196, 1271
Lsp1109I GCAGC 6 cut(s) 52, 115, 118, 451, 726, 748
LweI GCATC 6 cut(s) 70, 253, 602, 661, 1129, 1151
MaeI CTAG 2 cut(s) 362, 1203
MaeII ACGT 2 cut(s) 10, 1340
MaeIII GTNAC 2 cut(s) 201, 1297
MbiI CCGCTC 1 cut(s) 1336
MboII GAAGA 6 cut(s) 329, 350, 501, 803, 806, 971
MflI RGATCY 3 cut(s) 218, 796, 1356
MhlI GDGCHC 4 cut(s) 630, 1030, 1105, 1268
MmeI TCCRAC 3 cut(s) 1091, 1205, 1323
Mph1103I ATGCAT 2 cut(s) 156, 1144
MroXI GAANNNNTTC 1 cut(s) 1257
MseI TTAA 4 cut(s) 35, 110, 450, 530
MslI CAYNNNNRTG 1 cut(s) 1096
MspCI CTTAAG 1 cut(s) 449
MspR9I CCNGG 1 cut(s) 836
MvaI CCWGG 1 cut(s) 836
MvnI CGCG 2 cut(s) 396, 729
MwoI GCNNNNNNNGC 2 cut(s) 14, 885
NcoI CCATGG 1 cut(s) 87
NdeI CATATG 1 cut(s) 804
NlaIII CATG 9 cut(s) 91, 154, 198, 251, 278, 314, 697, 713, 1053
NlaIV GGNNCC 3 cut(s) 620, 1103, 1267
NruI TCGCGA 2 cut(s) 396, 729
NsiI ATGCAT 2 cut(s) 156, 1144
NspI RCATGY 1 cut(s) 198
NspV TTCGAA 3 cut(s) 434, 474, 1155
OliI CACNNNNGTG 1 cut(s) 1096
PagI TCATGA 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 1257
PfeI GAWTC 3 cut(s) 754, 1057, 1303
PkrI GCNGC 7 cut(s) 7, 67, 130, 133, 466, 741, 763
PmaCI CACGTG 1 cut(s) 11
PmlI CACGTG 1 cut(s) 11
Ppu21I YACGTR 1 cut(s) 11
Psp124BI GAGCTC 1 cut(s) 630
Psp6I CCWGG 1 cut(s) 834
PspCI CACGTG 1 cut(s) 11
PspGI CCWGG 1 cut(s) 834
PspN4I GGNNCC 3 cut(s) 620, 1103, 1267
PspOMI GGGCCC 1 cut(s) 1101
PspPI GGNCC 4 cut(s) 713, 1101, 1102, 1165
PsuI RGATCY 3 cut(s) 218, 796, 1356
RruI TCGCGA 2 cut(s) 396, 729
RsaI GTAC 1 cut(s) 818
RsaNI GTAC 1 cut(s) 817
RseI CAYNNNNRTG 1 cut(s) 1096
SacI GAGCTC 1 cut(s) 630
SaqAI TTAA 4 cut(s) 35, 110, 450, 530
SatI GCNGC 7 cut(s) 6, 66, 129, 132, 465, 740, 762
Sau96I GGNCC 4 cut(s) 713, 1101, 1102, 1165
ScrFI CCNGG 1 cut(s) 836
SduI GDGCHC 4 cut(s) 630, 1030, 1105, 1268
SfaNI GCATC 6 cut(s) 70, 253, 602, 661, 1129, 1151
SfuI TTCGAA 3 cut(s) 434, 474, 1155
SmiMI CAYNNNNRTG 1 cut(s) 1096
SmlI CTYRAG 2 cut(s) 449, 623
SmoI CTYRAG 2 cut(s) 449, 623
SsiI CCGC 1 cut(s) 1334
SspMI CTAG 2 cut(s) 362, 1203
SstI GAGCTC 1 cut(s) 630
StyD4I CCNGG 1 cut(s) 834
StyI CCWWGG 2 cut(s) 87, 417
TaaI ACNGT 6 cut(s) 22, 332, 549, 847, 1032, 1109
TaiI ACGT 2 cut(s) 13, 1343
TaqI TCGA 5 cut(s) 434, 474, 596, 1082, 1155
TfiI GAWTC 3 cut(s) 754, 1057, 1303
Tru1I TTAA 4 cut(s) 35, 110, 450, 530
Tru9I TTAA 4 cut(s) 35, 110, 450, 530
TscAI CASTG 1 cut(s) 1035
TseI GCWGC 7 cut(s) 5, 65, 128, 131, 464, 739, 761
TspDTI ATGAA 5 cut(s) 569, 804, 827, 875, 978
TspRI CASTG 1 cut(s) 1035
Vha464I CTTAAG 1 cut(s) 449
VneI GTGCAC 1 cut(s) 1026
XapI RAATTY 7 cut(s) 41, 175, 430, 478, 779, 897, 1114
XbaI TCTAGA 1 cut(s) 361
XceI RCATGY 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 1257
XspI CTAG 2 cut(s) 362, 1203
Zsp2I ATGCAT 2 cut(s) 156, 1144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.