Rh2AG436100

Serine threonine-protein phosphatase 7 long form homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0003095
Physical Location & Seq
Forward (+)
64710406 .. 64712289
1884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG436100.1

Sequence Viewer

Length: 1497 bp
ATGGAGTCACATGTGGATCCTGGACCAATTGATAAGTCTTTACTTTACGATCAAGACAATCACATCAGTTCAGCAATTTGGGATGGACAGGAGCGTGGTGTGCTTAGATGTCATGAACACACTTCAATGCTTGAGCACTGGAAACTCACGCCTAAACAAATTGAGTTGGTGGAGAAGGCTGGATTTGGGTACTTCAGATCAATTCCGACAATTATTCTTGACAATTCACTTATCTCGGCCCTTGTTGAGAGGTGGAGGAGAGAAACAAATACGTTTCATTTACCTGTTGGAGAAATGACTATAACACTTGAAGATGTTGCACTTATACTGGGGCTACCAGTTGACGGAAATCCTGTTATAGGCCCTACAGTGAGGACACCCAGCATAGTGTGTGAACAGTTACTGGGGAAAGTACCAAAGGACCTAAATGGGGGAATGTTGAAGCTAAATTGGTTGAGAGAATTCTTTTCCAAATGTCCTGACGATGCATTAGTTGAAGAGACGGCACGCCATACACGGGCTTACCTCCTATATCTTGTGGGATGTACAATATTTTCCACAACTACTGGGAATAAAGTCTCTGTTTCATTTCTCACACTATTTGAGAATTTTGATGAAGCTGGAAGATTTGCATGGGGTGCAGCAGCATTGGCGTTCCTCTATAGAGCTCTTGGTAACGCCTCCCTTAAATCTCAAGGCACAATTAGTGGCTCTTTGACACTACTGCAGTGTTGGAGTTATTATCATCTGAATGTTGGCCAACCAAAGTTCAATGAAGAGCCAAACCAGGGTTGTTTTCCATTTGCTCTTAGGTGGAAAGGACGATCTAGTGGAACAAGATCGAAAACTAACATAATTGCCTACCGCAAGGCCTTGGATTCCCTTCAACATTATGATGTTAAGTGGTATCCATACAAAGATTTGGATTCTACAGTTATACCCGAAGATATAAACAGTAATCTAATTTTACGGACATCAAAAACTATGTTGATATGCTTTGGTAAGGCAGAAAGGCACCTCCCTGATCGTTGCCTTAGGCAGTTTGGCATGCTTCAACCTATCCCAGAGCATCCTCAGAAATGGGAGAGGAAGATTCCTGCTCTTGATCAGGGATTAGACTTTTCAAAGGAGATGGAGGTGGAACTGAAAGGGAAAATACGCTCAGAAATTAGGGAATGGTTAGAGCGTGGTTTCTATATTCTGGAAGACGAGGAAGGTGTGGATGAAAGCGAGTACATGGAGTGGTATGAGAATATTACTCGTAAATATGTTGGAAGGCCTGAATCTTTAGAATCTGAGTTTCAGAGAATGGTTAGTGCTATGAGAGACATAGAAAATATAGCTGATTCATTGCCAATGGCAGAGATGGTTTCCCAAGATAGGAAGTTGCTTGCTGAAGTCAAAAGCACATTGCAAACATGTTTTGATGATGTCGTTGGAAATTCAAAAAAGGGTAGGTGTAAGAATGCTGTAAAGCGTAAGAGGGAGGGAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

498

Amino Acids

56.87

Weight (kDa)

6.08

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 61 - 417 3.6e-101 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1014
AciI CCGC 1 cut(s) 865
AclWI GGATC 2 cut(s) 11, 24
AcoI YGGCCR 1 cut(s) 757
AcsI RAATTY 3 cut(s) 461, 607, 1441
AcuI CTGAAG 2 cut(s) 178, 1416
AfaI GTAC 4 cut(s) 191, 414, 547, 1235
AfiI CCNNNNNNNGG 6 cut(s) 344, 359, 430, 517, 788, 1380
AflIII ACRYGT 2 cut(s) 10, 1418
AgsI TTSAA 9 cut(s) 126, 311, 442, 497, 772, 887, 1055, 1125, 1446
AjnI CCWGG 2 cut(s) 19, 786
AluBI AGCT 4 cut(s) 445, 620, 668, 1343
AluI AGCT 4 cut(s) 445, 620, 668, 1343
Alw21I GWGCWC 2 cut(s) 138, 670
Alw26I GTCTC 3 cut(s) 494, 583, 1320
AlwI GGATC 2 cut(s) 11, 24
AlwNI CAGNNNCTG 1 cut(s) 403
AoxI GGCC 5 cut(s) 237, 361, 757, 870, 1277
ApeKI GCWGC 2 cut(s) 641, 644
ApoI RAATTY 3 cut(s) 461, 607, 1441
AspS9I GGNCC 4 cut(s) 23, 238, 362, 421
AvaII GGWCC 2 cut(s) 23, 421
AxyI CCTNAGG 1 cut(s) 1034
BalI TGGCCA 1 cut(s) 759
BamHI GGATCC 1 cut(s) 16
BanI GGYRCC 1 cut(s) 1014
BanII GRGCYC 1 cut(s) 670
BbsI GAAGAC 1 cut(s) 1212
Bbv12I GWGCWC 2 cut(s) 138, 670
BbvI GCAGC 2 cut(s) 653, 656
BccI CCATC 3 cut(s) 77, 1126, 1360
BceAI ACGGC 1 cut(s) 519
BciT130I CCWGG 2 cut(s) 21, 788
BciVI GTATCC 1 cut(s) 918
BclI TGATCA 1 cut(s) 1105
BcoDI GTCTC 3 cut(s) 494, 583, 1320
BfaI CTAG 1 cut(s) 828
BfmI CTRYAG 4 cut(s) 366, 661, 725, 930
BfuI GTATCC 1 cut(s) 918
BisI GCNGC 2 cut(s) 642, 645
BlsI GCNGC 2 cut(s) 643, 646
Bme1390I CCNGG 2 cut(s) 21, 788
Bme18I GGWCC 2 cut(s) 23, 421
BmgT120I GGNCC 4 cut(s) 23, 238, 362, 421
BmiI GGNNCC 2 cut(s) 18, 1016
BmrFI CCNGG 2 cut(s) 21, 788
BmrI ACTGGG 3 cut(s) 338, 413, 576
BmsI GCATC 2 cut(s) 475, 1078
BmuI ACTGGG 3 cut(s) 338, 413, 576
BpiI GAAGAC 1 cut(s) 1212
BpuEI CTTGAG 2 cut(s) 152, 678
BsaJI CCNNGG 2 cut(s) 787, 873
Bsc4I CCNNNNNNNGG 6 cut(s) 344, 359, 430, 517, 788, 1380
Bse1I ACTGG 5 cut(s) 143, 333, 338, 408, 571
Bse21I CCTNAGG 1 cut(s) 1034
Bse3DI GCAATG 2 cut(s) 1349, 1409
BseBI CCWGG 2 cut(s) 21, 788
BseDI CCNNGG 2 cut(s) 787, 873
BseGI GGATG 4 cut(s) 88, 548, 1069, 1228
BseLI CCNNNNNNNGG 6 cut(s) 344, 359, 430, 517, 788, 1380
BseMI GCAATG 2 cut(s) 1349, 1409
BseMII CTCAG 3 cut(s) 1088, 1176, 1287
BseNI ACTGG 5 cut(s) 143, 333, 338, 408, 571
BseRI GAGGAG 1 cut(s) 271
BseXI GCAGC 2 cut(s) 653, 656
BseYI CCCAGC 1 cut(s) 380
BsgI GTGCAG 1 cut(s) 660
BshFI GGCC 5 cut(s) 239, 363, 759, 872, 1279
BshNI GGYRCC 1 cut(s) 1014
BsiHKAI GWGCWC 2 cut(s) 138, 670
BslI CCNNNNNNNGG 6 cut(s) 344, 359, 430, 517, 788, 1380
BsmAI GTCTC 3 cut(s) 494, 583, 1320
BsmBI CGTCTC 1 cut(s) 494
BsmI GAATGC 1 cut(s) 1471
BsnI GGCC 5 cut(s) 239, 363, 759, 872, 1279
Bsp1286I GDGCHC 2 cut(s) 138, 670
Bsp1407I TGTACA 1 cut(s) 545
Bsp143I GATC 7 cut(s) 16, 49, 197, 824, 839, 1024, 1105
BspACI CCGC 1 cut(s) 865
BspANI GGCC 5 cut(s) 239, 363, 759, 872, 1279
BspCNI CTCAG 3 cut(s) 1087, 1175, 1288
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 2 cut(s) 18, 1016
BspMAI CTGCAG 1 cut(s) 729
BspPI GGATC 2 cut(s) 11, 24
BspQI GCTCTTC 1 cut(s) 771
BspT107I GGYRCC 1 cut(s) 1014
BsrDI GCAATG 2 cut(s) 1349, 1409
BsrGI TGTACA 1 cut(s) 545
BsrI ACTGG 5 cut(s) 143, 333, 338, 408, 571
BssECI CCNNGG 2 cut(s) 787, 873
BssMI GATC 7 cut(s) 16, 49, 197, 824, 839, 1024, 1105
BssT1I CCWWGG 1 cut(s) 873
Bst2UI CCWGG 2 cut(s) 21, 788
Bst4CI ACNGT 4 cut(s) 370, 399, 934, 956
Bst6I CTCTTC 2 cut(s) 492, 771
BstAPI GCANNNNNTGC 1 cut(s) 638
BstAUI TGTACA 1 cut(s) 545
BstC8I GCNNGC 3 cut(s) 508, 1049, 1392
BstDEI CTNAG 6 cut(s) 104, 809, 1034, 1074, 1162, 1296
BstENI CCTNNNNNAGG 1 cut(s) 357
BstF5I GGATG 4 cut(s) 88, 548, 1069, 1228
BstKTI GATC 7 cut(s) 19, 52, 200, 827, 842, 1027, 1108
BstMAI GTCTC 3 cut(s) 494, 583, 1320
BstMBI GATC 7 cut(s) 16, 49, 197, 824, 839, 1024, 1105
BstMWI GCNNNNNNNGC 3 cut(s) 100, 638, 650
BstNI CCWGG 2 cut(s) 21, 788
BstNSI RCATGY 3 cut(s) 14, 1051, 1422
BstSCI CCNGG 2 cut(s) 19, 786
BstSFI CTRYAG 4 cut(s) 366, 661, 725, 930
BstV1I GCAGC 2 cut(s) 653, 656
BstV2I GAAGAC 1 cut(s) 1212
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
Bsu36I CCTNAGG 1 cut(s) 1034
BsuI GTATCC 1 cut(s) 918
BsuRI GGCC 5 cut(s) 239, 363, 759, 872, 1279
BtsCI GGATG 4 cut(s) 88, 548, 1069, 1228
BtsI GCAGTG 1 cut(s) 734
BtsIMutI CAGTG 3 cut(s) 136, 375, 734
Cac8I GCNNGC 3 cut(s) 508, 1049, 1392
CaiI CAGNNNCTG 1 cut(s) 403
CciI TCATGA 1 cut(s) 112
Cfr13I GGNCC 4 cut(s) 23, 238, 362, 421
Csp6I GTAC 4 cut(s) 190, 413, 546, 1234
CviAII CATG 6 cut(s) 11, 113, 633, 1048, 1237, 1419
CviQI GTAC 4 cut(s) 190, 413, 546, 1234
DdeI CTNAG 6 cut(s) 104, 809, 1034, 1074, 1162, 1296
DpnI GATC 7 cut(s) 18, 51, 199, 826, 841, 1026, 1107
DpnII GATC 7 cut(s) 16, 49, 197, 824, 839, 1024, 1105
EaeI YGGCCR 1 cut(s) 757
Eam1104I CTCTTC 2 cut(s) 492, 771
EarI CTCTTC 2 cut(s) 492, 771
Ecl136II GAGCTC 1 cut(s) 668
Eco130I CCWWGG 1 cut(s) 873
Eco147I AGGCCT 2 cut(s) 872, 1279
Eco24I GRGCYC 1 cut(s) 670
Eco47I GGWCC 2 cut(s) 23, 421
Eco53kI GAGCTC 1 cut(s) 668
Eco57I CTGAAG 2 cut(s) 178, 1416
Eco81I CCTNAGG 1 cut(s) 1034
EcoICRI GAGCTC 1 cut(s) 668
EcoNI CCTNNNNNAGG 1 cut(s) 357
EcoO109I RGGNCCY 2 cut(s) 362, 421
EcoRI GAATTC 1 cut(s) 461
EcoRII CCWGG 2 cut(s) 19, 786
EcoT14I CCWWGG 1 cut(s) 873
EcoT22I ATGCAT 1 cut(s) 490
EcoT38I GRGCYC 1 cut(s) 670
ErhI CCWWGG 1 cut(s) 873
Esp3I CGTCTC 1 cut(s) 494
FaeI CATG 6 cut(s) 14, 116, 636, 1051, 1240, 1422
FatI CATG 6 cut(s) 10, 112, 632, 1047, 1236, 1418
FbaI TGATCA 1 cut(s) 1105
Fnu4HI GCNGC 2 cut(s) 642, 645
FokI GGATG 4 cut(s) 95, 555, 1056, 1235
FriOI GRGCYC 1 cut(s) 670
Fsp4HI GCNGC 2 cut(s) 642, 645
FspBI CTAG 1 cut(s) 828
GluI GCNGC 2 cut(s) 642, 645
GsaI CCCAGC 1 cut(s) 384
HaeIII GGCC 5 cut(s) 239, 363, 759, 872, 1279
Hin1II CATG 6 cut(s) 14, 116, 636, 1051, 1240, 1422
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 7 cut(s) 5, 878, 926, 1093, 1283, 1292, 1346
Hpy166II GTNNAC 2 cut(s) 343, 395
Hpy188I TCNGA 7 cut(s) 197, 207, 750, 1077, 1165, 1297, 1305
Hpy188III TCNNGA 6 cut(s) 53, 113, 218, 479, 1103, 1202
Hpy8I GTNNAC 2 cut(s) 343, 395
HpyAV CCTTC 4 cut(s) 169, 893, 1208, 1269
HpyCH4III ACNGT 4 cut(s) 370, 399, 934, 956
HpyCH4IV ACGT 1 cut(s) 272
HpyCH4V TGCA 6 cut(s) 320, 488, 632, 641, 727, 1414
HpyF10VI GCNNNNNNNGC 3 cut(s) 100, 638, 650
HpyF3I CTNAG 6 cut(s) 104, 809, 1034, 1074, 1162, 1296
HpySE526I ACGT 1 cut(s) 272
Hsp92II CATG 6 cut(s) 14, 116, 636, 1051, 1240, 1422
Ksp22I TGATCA 1 cut(s) 1105
Kzo9I GATC 7 cut(s) 16, 49, 197, 824, 839, 1024, 1105
LguI GCTCTTC 1 cut(s) 771
LmnI GCTCC 1 cut(s) 91
Lsp1109I GCAGC 2 cut(s) 653, 656
LweI GCATC 2 cut(s) 475, 1078
MaeI CTAG 1 cut(s) 828
MaeII ACGT 1 cut(s) 272
MaeIII GTNAC 3 cut(s) 6, 399, 674
MalI GATC 7 cut(s) 18, 51, 199, 826, 841, 1026, 1107
MboI GATC 7 cut(s) 16, 49, 197, 824, 839, 1024, 1105
MboII GAAGA 7 cut(s) 323, 509, 636, 788, 956, 1102, 1217
MfeI CAATTG 1 cut(s) 27
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 2 cut(s) 138, 670
MlsI TGGCCA 1 cut(s) 759
MluNI TGGCCA 1 cut(s) 759
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 5 cut(s) 230, 268, 713, 1252, 1417
Mox20I TGGCCA 1 cut(s) 759
Mph1103I ATGCAT 1 cut(s) 490
MscI TGGCCA 1 cut(s) 759
MseI TTAA 2 cut(s) 687, 900
MslI CAYNNNNRTG 3 cut(s) 125, 750, 894
Msp20I TGGCCA 1 cut(s) 759
MspR9I CCNGG 2 cut(s) 21, 788
MunI CAATTG 1 cut(s) 27
Mva1269I GAATGC 1 cut(s) 1471
MvaI CCWGG 2 cut(s) 21, 788
MwoI GCNNNNNNNGC 3 cut(s) 100, 638, 650
NdeII GATC 7 cut(s) 16, 49, 197, 824, 839, 1024, 1105
NlaIII CATG 6 cut(s) 14, 116, 636, 1051, 1240, 1422
NlaIV GGNNCC 2 cut(s) 18, 1016
NmeAIII GCCGAG 1 cut(s) 215
NmuCI GTSAC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 490
NspI RCATGY 3 cut(s) 14, 1051, 1422
PaeI GCATGC 1 cut(s) 1051
PagI TCATGA 1 cut(s) 112
PceI AGGCCT 2 cut(s) 872, 1279
PciI ACATGT 2 cut(s) 10, 1418
PciSI GCTCTTC 1 cut(s) 771
PctI GAATGC 1 cut(s) 1471
PfeI GAWTC 6 cut(s) 878, 926, 1093, 1283, 1292, 1346
PfoI TCCNGGA 1 cut(s) 19
PkrI GCNGC 2 cut(s) 643, 646
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 421
PscI ACATGT 2 cut(s) 10, 1418
Psp124BI GAGCTC 1 cut(s) 670
Psp5II RGGWCCY 1 cut(s) 421
Psp6I CCWGG 2 cut(s) 19, 786
PspFI CCCAGC 1 cut(s) 380
PspGI CCWGG 2 cut(s) 19, 786
PspN4I GGNNCC 2 cut(s) 18, 1016
PspPI GGNCC 4 cut(s) 23, 238, 362, 421
PspPPI RGGWCCY 1 cut(s) 421
PstI CTGCAG 1 cut(s) 729
PstNI CAGNNNCTG 1 cut(s) 403
PsuI RGATCY 1 cut(s) 16
RsaI GTAC 4 cut(s) 191, 414, 547, 1235
RsaNI GTAC 4 cut(s) 190, 413, 546, 1234
RseI CAYNNNNRTG 3 cut(s) 125, 750, 894
SacI GAGCTC 1 cut(s) 670
SapI GCTCTTC 1 cut(s) 771
SaqAI TTAA 2 cut(s) 687, 900
SatI GCNGC 2 cut(s) 642, 645
Sau3AI GATC 7 cut(s) 16, 49, 197, 824, 839, 1024, 1105
Sau96I GGNCC 4 cut(s) 23, 238, 362, 421
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 2 cut(s) 21, 788
SduI GDGCHC 2 cut(s) 138, 670
SfaNI GCATC 2 cut(s) 475, 1078
SfcI CTRYAG 4 cut(s) 366, 661, 725, 930
SinI GGWCC 2 cut(s) 23, 421
SmiMI CAYNNNNRTG 3 cut(s) 125, 750, 894
SmlI CTYRAG 2 cut(s) 131, 693
SmoI CTYRAG 2 cut(s) 131, 693
SphI GCATGC 1 cut(s) 1051
SseBI AGGCCT 2 cut(s) 872, 1279
SsiI CCGC 1 cut(s) 865
SspI AATATT 2 cut(s) 552, 1255
SspMI CTAG 1 cut(s) 828
SstI GAGCTC 1 cut(s) 670
StuI AGGCCT 2 cut(s) 872, 1279
StyD4I CCNGG 2 cut(s) 19, 786
StyI CCWWGG 1 cut(s) 873
TaaI ACNGT 4 cut(s) 370, 399, 934, 956
TaiI ACGT 1 cut(s) 275
TaqI TCGA 1 cut(s) 842
TatI WGTACW 2 cut(s) 545, 1233
TfiI GAWTC 6 cut(s) 878, 926, 1093, 1283, 1292, 1346
Tru1I TTAA 2 cut(s) 687, 900
Tru9I TTAA 2 cut(s) 687, 900
TscAI CASTG 3 cut(s) 143, 375, 734
TseFI GTSAC 1 cut(s) 6
TseI GCWGC 2 cut(s) 641, 644
Tsp45I GTSAC 1 cut(s) 6
TspDTI ATGAA 7 cut(s) 129, 266, 576, 630, 789, 1239, 1338
TspGWI ACGGA 2 cut(s) 360, 985
TspRI CASTG 3 cut(s) 143, 375, 734
VpaK11BI GGWCC 2 cut(s) 23, 421
XagI CCTNNNNNAGG 1 cut(s) 357
XapI RAATTY 3 cut(s) 461, 607, 1441
XceI RCATGY 3 cut(s) 14, 1051, 1422
XspI CTAG 1 cut(s) 828
Zsp2I ATGCAT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.