Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003095

Physical Location & Seq

Genomic Coordinates Forward (+)

10631531 .. 10633754

Gene Structure 2224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G25010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGGATATTGATGTCGGACCAGTTGATCCATCTGTCCTATACGAGCAAGACCTCCATGTTTCTTCTGCTGTTTGGGAAGGACAGGAACGAGGTCTACTTCGTTGTCAAGAACACACTTCATTGCTACATCAATGGAAACTCACTGATGAACAAATTAACCTCGTGGACAAAGCTGGTTTCGGTTACTTTCGCAAAATCGGTCCAATGAGTTTAAACAATTCACTGATCTCTGCACTTGTTGAGCGATGGAGAAGAGAAACCAATACTTTTCATCTTCCTTTAGGAGAAATGACTATAACCTTAGACGAAGTTGCTTTAGTACTTGGACTTGAGATTGATGGAGATCCCATTGTTGGTTCTAAAGTTGGTGATGAGGTTGCTATGGATATGTGTGGTAGACTTTTAGGGAAGTTACCATCTGCTGCTAATAAAGAAGTTAATTGTTCTAGGGTTAAGCTTAATTGGCTTAAAAGAACTTTCTCTGAGTGTCCTGAAGATGCTTCTTTCGATGTTGTTAAATGTCATACTCGAGCTTATCTTTTGTATCTTATTGGTAGTACCATTTTTGCTACTACTGATGGTGATAAAGTCTCTGTTAAGTATTTGCCTTTGTTTGAGGATTTTGATCAAGCTGGGAGATATGCTTGGGGAGCTGCTGCGTTGGCTTGTCTTTACCGAGCGCTCGGTAATGCGTCGCTTAAATCTCAGAGCAACATTTGCGGTTGTTTGACTTTGCTACAGTGTTGGAGTTATTTTCATCTGGATATCGGTAGACCCGAGAAATCCGAAGCGTGTTTCCCGCTTGCTCTTTTGTGGAAAGGTAAAGGAAGCAGATCCAAAACCGACCTATCTGAGTACCGCAGAGAACTGGACGATCTTGATCCTAGCAAGATCACTTGGTGTCCATATGAAAGATTTGAGAACTTGATTCCACCACACATTAAAGCCAAGCTGATTCTAGGAAGATCGAAAACGACTCTTGTATGCTTTGAGAAAATAGAGTTACATTTTCCAGATAGGTGTCTGAGGCAGTTTGGGAAACGCCAGCCGATACCTCTGAAAGTAAAACGCCGCGACAGAAAGAACCGTCGGCTTGATGACTTGGACACGTCAATGAGTCTAGCGTGTGAGGAATGGGCTGAACGTGGGGATCACATCGTGGACAGTCCTGGAGGTGGCAATGTGGTGGATGATGGAGCTTACATGGAATGGTATGCTAGGATCAGTATCACCAAACTATACCGAGAAGCGTTTCTCGAGTCCCAAGTCATGAATATGATTGCTTGTATGAGGGAATTTGAGGAAGCTGCTTCAGGGATTGCACTAGAGAGATTATCTCCAGCGGAGAGAGAAGTGATGGAGAGTGTGAAAGATACATTCGCTAATAGTTTGACGTTTGGGGGATGGCAAGAGGTGGCAGTTAACAGTGGTTACGGGAAGCGCCGGCGTCGGAATGAACACACTCCGACGCCGAATAATGGTGGTGGTAATGATATTTCGTCTCTTCTGCTTCAAAAGGAAGACTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009892 GO:0009987 GO:0010015 GO:0010073 GO:0010075 GO:0010082 GO:0010468 GO:0010605 GO:0010629 GO:0016458 GO:0019222 GO:0022622 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048507 GO:0048509 GO:0048519 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0060255 GO:0065007 GO:0099402 GO:1905392 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMD

Protein Analysis

509

Amino Acids

57.48

Weight (kDa)

5.82

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	59 - 405	3.2e-109	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25010
fragaria_vesca	FvH4_3g28611 FvH4_6g33711 FvH4_6g33711 FvH4_6g33711
malus_domestica	MD09G1191600.v1.1
prunus_persica	Prupe.3G047800_v2.0.a1 Prupe.4G252400_v2.0.a1
pyrus_communis	pycom09g10810
rosa_chinensis	RchiOBHm_Chr2g0143601 RchiOBHm_Chr5g0052481
rosa_laevigata	RLG00000020050 RLG00000034816
rosa_multiflora	Rmu_sc0002311.1_g000001 Rmu_sc0002412.1_g000002 Rmu_sc0006803.1_g000043
rosa_roxburghii	Rroxscaffold_1G00028360 Rroxscaffold_2G00101610
rosa_rugosa	Rorug02G0384100 Rorug02G0384100 Rorug02G0384200 Rorug02G0384300 Rorug02G0384300 Rorug02G0384400 Rorug02G0384400 Rorug05G0271600 Rorug05G0271700
rosa_samantha	Rh2AG436100 Rh2BG443700 Rh2CG422300 Rh2DG454100 Rh5AG344300 Rh5BG355400 Rh5CG380800 Rh5DG370600
rosa_wichuraiana	Rw2G035540 Rw5G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	94, 397, 772
AccII	CGCG	1 cut(s)	1074
AciI	CCGC	5 cut(s)	720, 800, 859, 1072, 1343
AclWI	GGATC	6 cut(s)	20, 338, 828, 875, 1158, 1229
AcsI	RAATTY	1 cut(s)	1295
AcuI	CTGAAG	2 cut(s)	513, 1296
AcyI	GRCGYC	2 cut(s)	1447, 1469
AdeI	CACNNNGTG	2 cut(s)	900, 1159
AfaI	GTAC	3 cut(s)	321, 559, 857
AfeI	AGCGCT	1 cut(s)	681
AfiI	CCNNNNNNNGG	3 cut(s)	353, 1175, 1478
AflIII	ACRYGT	1 cut(s)	1107
AgsI	TTSAA	1 cut(s)	1514
AjiI	CACGTC	1 cut(s)	1110
AjnI	CCWGG	1 cut(s)	1168
AluBI	AGCT	8 cut(s)	173, 457, 533, 632, 653, 952, 1199, 1307
AluI	AGCT	8 cut(s)	173, 457, 533, 632, 653, 952, 1199, 1307
Alw26I	GTCTC	2 cut(s)	595, 1506
AlwI	GGATC	6 cut(s)	20, 338, 828, 875, 1158, 1229
Ama87I	CYCGRG	3 cut(s)	528, 776, 1256
Aor51HI	AGCGCT	1 cut(s)	681
ApeKI	GCWGC	4 cut(s)	422, 653, 656, 1307
ApoI	RAATTY	1 cut(s)	1295
Asp700I	GAANNNNTTC	1 cut(s)	1251
AspLEI	GCGC	2 cut(s)	682, 1443
AspS9I	GGNCC	2 cut(s)	17, 200
AsuHPI	GGTGA	3 cut(s)	380, 593, 1222
AvaI	CYCGRG	3 cut(s)	528, 776, 1256
AvaII	GGWCC	2 cut(s)	17, 200
BauI	CACGAG	2 cut(s)	161, 1525
BbvI	GCAGC	4 cut(s)	409, 640, 643, 1294
BccI	CCATC	8 cut(s)	37, 240, 332, 424, 572, 1187, 1351, 1398
BciT130I	CCWGG	1 cut(s)	1170
BclI	TGATCA	1 cut(s)	625
BcoDI	GTCTC	2 cut(s)	595, 1506
BfaI	CTAG	6 cut(s)	447, 885, 959, 1121, 1218, 1325
BfmI	CTRYAG	1 cut(s)	737
BfoI	RGCGCY	2 cut(s)	683, 1444
BisI	GCNGC	5 cut(s)	423, 654, 657, 1072, 1308
BlsI	GCNGC	5 cut(s)	424, 655, 658, 1073, 1309
BmcAI	AGTACT	1 cut(s)	321
Bme1390I	CCNGG	1 cut(s)	1170
Bme18I	GGWCC	2 cut(s)	17, 200
BmeT110I	CYCGRG	3 cut(s)	528, 776, 1256
BmgBI	CACGTC	1 cut(s)	1110
BmgT120I	GGNCC	2 cut(s)	17, 200
BmrFI	CCNGG	1 cut(s)	1170
BmsI	GCATC	1 cut(s)	487
BplI	GAGNNNNNCTC	2 cut(s)	1321, 1353
BpmI	CTGGAG	2 cut(s)	1191, 1323
BpuEI	CTTGAG	1 cut(s)	350
BsaBI	GATNNNNATC	4 cut(s)	342, 624, 879, 1226
BsaHI	GRCGYC	2 cut(s)	1447, 1469
Bsc4I	CCNNNNNNNGG	3 cut(s)	353, 1175, 1478
Bse118I	RCCGGY	1 cut(s)	1443
Bse1I	ACTGG	2 cut(s)	20, 873
Bse3DI	GCAATG	2 cut(s)	119, 1186
Bse8I	GATNNNNATC	4 cut(s)	342, 624, 879, 1226
BseBI	CCWGG	1 cut(s)	1170
BseGI	GGATG	2 cut(s)	1195, 1409
BseJI	GATNNNNATC	4 cut(s)	342, 624, 879, 1226
BseLI	CCNNNNNNNGG	3 cut(s)	353, 1175, 1478
BseMI	GCAATG	2 cut(s)	119, 1186
BseMII	CTCAG	4 cut(s)	474, 719, 843, 1016
BseNI	ACTGG	2 cut(s)	20, 873
BseXI	GCAGC	4 cut(s)	409, 640, 643, 1294
BseYI	CCCAGC	1 cut(s)	632
BsgI	GTGCAG	1 cut(s)	216
Bsh1236I	CGCG	1 cut(s)	1074
BsiHKCI	CYCGRG	3 cut(s)	528, 776, 1256
BsiSI	CCGG	1 cut(s)	1444
BslFI	GGGAC	1 cut(s)	1246
BslI	CCNNNNNNNGG	3 cut(s)	353, 1175, 1478
BsmAI	GTCTC	2 cut(s)	595, 1506
BsmBI	CGTCTC	1 cut(s)	1506
BsmFI	GGGAC	1 cut(s)	1246
BsoBI	CYCGRG	3 cut(s)	528, 776, 1256
BspACI	CCGC	5 cut(s)	720, 800, 859, 1072, 1343
BspCNI	CTCAG	4 cut(s)	475, 718, 844, 1017
BspFNI	CGCG	1 cut(s)	1074
BspHI	TCATGA	1 cut(s)	1269
BspPI	GGATC	6 cut(s)	20, 338, 828, 875, 1158, 1229
BsrDI	GCAATG	2 cut(s)	119, 1186
BsrFI	RCCGGY	1 cut(s)	1443
BsrI	ACTGG	2 cut(s)	20, 873
BssAI	RCCGGY	1 cut(s)	1443
BssNI	GRCGYC	2 cut(s)	1447, 1469
BssSI	CACGAG	2 cut(s)	161, 1525
Bst2BI	CACGAG	2 cut(s)	161, 1525
Bst2UI	CCWGG	1 cut(s)	1170
Bst4CI	ACNGT	4 cut(s)	741, 1088, 1166, 1427
Bst6I	CTCTTC	2 cut(s)	247, 1509
BstACI	GRCGYC	2 cut(s)	1447, 1469
BstAPI	GCANNNNNTGC	1 cut(s)	717
BstC8I	GCNNGC	3 cut(s)	804, 1046, 1445
BstDEI	CTNAG	5 cut(s)	301, 483, 705, 852, 1025
BstF5I	GGATG	2 cut(s)	1195, 1409
BstFNI	CGCG	1 cut(s)	1074
BstH2I	RGCGCY	2 cut(s)	683, 1444
BstHHI	GCGC	2 cut(s)	682, 1443
BstMAI	GTCTC	2 cut(s)	595, 1506
BstMWI	GCNNNNNNNGC	4 cut(s)	463, 650, 662, 717
BstNI	CCWGG	1 cut(s)	1170
BstSCI	CCNGG	1 cut(s)	1168
BstSFI	CTRYAG	1 cut(s)	737
BstUI	CGCG	1 cut(s)	1074
BstV1I	GCAGC	4 cut(s)	409, 640, 643, 1294
BstX2I	RGATCY	2 cut(s)	343, 833
BstYI	RGATCY	2 cut(s)	343, 833
BtgZI	GCGATG	1 cut(s)	259
BtrI	CACGTC	1 cut(s)	1110
BtsCI	GGATG	2 cut(s)	1195, 1409
BtsIMutI	CAGTG	4 cut(s)	141, 221, 746, 1432
Cac8I	GCNNGC	3 cut(s)	804, 1046, 1445
CciI	TCATGA	1 cut(s)	1269
CfoI	GCGC	2 cut(s)	682, 1443
Cfr10I	RCCGGY	1 cut(s)	1443
Cfr13I	GGNCC	2 cut(s)	17, 200
CseI	GACGC	3 cut(s)	681, 1436, 1477
Csp6I	GTAC	3 cut(s)	320, 558, 856
CviAII	CATG	3 cut(s)	56, 1204, 1270
CviQI	GTAC	3 cut(s)	320, 558, 856
DdeI	CTNAG	5 cut(s)	301, 483, 705, 852, 1025
DraI	TTTAAA	1 cut(s)	213
DraIII	CACNNNGTG	2 cut(s)	900, 1159
Eam1104I	CTCTTC	2 cut(s)	247, 1509
EarI	CTCTTC	2 cut(s)	247, 1509
Eco32I	GATATC	1 cut(s)	766
Eco47I	GGWCC	2 cut(s)	17, 200
Eco47III	AGCGCT	1 cut(s)	681
Eco57I	CTGAAG	2 cut(s)	513, 1296
Eco88I	CYCGRG	3 cut(s)	528, 776, 1256
EcoRII	CCWGG	1 cut(s)	1168
EcoRV	GATATC	1 cut(s)	766
Esp3I	CGTCTC	1 cut(s)	1506
FaeI	CATG	3 cut(s)	59, 1207, 1273
FaqI	GGGAC	1 cut(s)	1246
FatI	CATG	3 cut(s)	55, 1203, 1269
FauI	CCCGC	1 cut(s)	807
FauNDI	CATATG	1 cut(s)	907
FbaI	TGATCA	1 cut(s)	625
FblI	GTMKAC	3 cut(s)	94, 397, 772
Fnu4HI	GCNGC	5 cut(s)	423, 654, 657, 1072, 1308
FokI	GGATG	2 cut(s)	1202, 1416
Fsp4HI	GCNGC	5 cut(s)	423, 654, 657, 1072, 1308
FspBI	CTAG	6 cut(s)	447, 885, 959, 1121, 1218, 1325
GlaI	GCGC	2 cut(s)	681, 1442
GluI	GCNGC	5 cut(s)	423, 654, 657, 1072, 1308
GsaI	CCCAGC	1 cut(s)	636
GsuI	CTGGAG	2 cut(s)	1191, 1323
HaeII	RGCGCY	2 cut(s)	683, 1444
HapII	CCGG	1 cut(s)	1444
HgaI	GACGC	3 cut(s)	681, 1436, 1477
HhaI	GCGC	2 cut(s)	682, 1443
Hin1I	GRCGYC	2 cut(s)	1447, 1469
Hin1II	CATG	3 cut(s)	59, 1207, 1273
Hin6I	GCGC	2 cut(s)	680, 1441
HinP1I	GCGC	2 cut(s)	680, 1441
HincII	GTYRAC	1 cut(s)	1423
HindII	GTYRAC	1 cut(s)	1423
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	6 cut(s)	928, 955, 976, 1117, 1259, 1523
HpaI	GTTAAC	1 cut(s)	1423
HpaII	CCGG	1 cut(s)	1444
HphI	GGTGA	3 cut(s)	380, 593, 1222
Hpy166II	GTNNAC	6 cut(s)	95, 166, 398, 773, 1162, 1423
Hpy188I	TCNGA	9 cut(s)	17, 484, 708, 787, 853, 1026, 1059, 1452, 1467
Hpy188III	TCNNGA	8 cut(s)	107, 491, 761, 878, 1013, 1256, 1270, 1527
Hpy8I	GTNNAC	6 cut(s)	95, 166, 398, 773, 1162, 1423
Hpy99I	CGWCG	4 cut(s)	697, 1092, 1452, 1471
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	4 cut(s)	741, 1088, 1166, 1427
HpyCH4IV	ACGT	3 cut(s)	1109, 1144, 1394
HpyCH4V	TGCA	2 cut(s)	233, 1322
HpyF10VI	GCNNNNNNNGC	4 cut(s)	463, 650, 662, 717
HpyF3I	CTNAG	5 cut(s)	301, 483, 705, 852, 1025
HpySE526I	ACGT	3 cut(s)	1109, 1144, 1394
Hsp92I	GRCGYC	2 cut(s)	1447, 1469
Hsp92II	CATG	3 cut(s)	59, 1207, 1273
HspAI	GCGC	2 cut(s)	680, 1441
KroI	GCCGGC	1 cut(s)	1443
KroNI	GCCGGC	1 cut(s)	1445
Ksp22I	TGATCA	1 cut(s)	625
KspAI	GTTAAC	1 cut(s)	1423
LmnI	GCTCC	2 cut(s)	650, 1196
Lsp1109I	GCAGC	4 cut(s)	409, 640, 643, 1294
LweI	GCATC	1 cut(s)	487
MaeI	CTAG	6 cut(s)	447, 885, 959, 1121, 1218, 1325
MaeII	ACGT	3 cut(s)	1109, 1144, 1394
MaeIII	GTNAC	4 cut(s)	182, 411, 1002, 1430
MboII	GAAGA	6 cut(s)	54, 264, 266, 506, 975, 1496
MflI	RGATCY	2 cut(s)	343, 833
MluCI	AATT	5 cut(s)	153, 217, 439, 460, 1295
MlyI	GAGTC	4 cut(s)	970, 1126, 1268, 1517
MmeI	TCCRAC	3 cut(s)	725, 1430, 1490
MreI	CGCCGGCG	1 cut(s)	1443
MroNI	GCCGGC	1 cut(s)	1443
MroXI	GAANNNNTTC	1 cut(s)	1251
MslI	CAYNNNNRTG	2 cut(s)	1112, 1274
MspA1I	CMGCKG	1 cut(s)	1343
MspI	CCGG	1 cut(s)	1444
MspR9I	CCNGG	1 cut(s)	1170
MssI	GTTTAAAC	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	1170
MvnI	CGCG	1 cut(s)	1074
MwoI	GCNNNNNNNGC	4 cut(s)	463, 650, 662, 717
NaeI	GCCGGC	1 cut(s)	1445
NdeI	CATATG	1 cut(s)	907
NgoMIV	GCCGGC	1 cut(s)	1443
NlaIII	CATG	3 cut(s)	59, 1207, 1273
PaeR7I	CTCGAG	2 cut(s)	528, 1256
PagI	TCATGA	1 cut(s)	1269
PcsI	WCGNNNNNNNCGW	1 cut(s)	774
PdiI	GCCGGC	1 cut(s)	1445
PdmI	GAANNNNTTC	1 cut(s)	1251
PfeI	GAWTC	2 cut(s)	928, 955
PfoI	TCCNGGA	1 cut(s)	1168
PkrI	GCNGC	5 cut(s)	424, 655, 658, 1073, 1309
PleI	GAGTC	4 cut(s)	970, 1125, 1267, 1517
PmeI	GTTTAAAC	1 cut(s)	213
PpsI	GAGTC	4 cut(s)	970, 1125, 1267, 1517
Psp6I	CCWGG	1 cut(s)	1168
PspFI	CCCAGC	1 cut(s)	632
PspGI	CCWGG	1 cut(s)	1168
PspPI	GGNCC	2 cut(s)	17, 200
PspXI	VCTCGAGB	1 cut(s)	528
PsrI	GAACNNNNNNTAC	2 cut(s)	78, 110
PsuI	RGATCY	2 cut(s)	343, 833
RsaI	GTAC	3 cut(s)	321, 559, 857
RsaNI	GTAC	3 cut(s)	320, 558, 856
RseI	CAYNNNNRTG	2 cut(s)	1112, 1274
SatI	GCNGC	5 cut(s)	423, 654, 657, 1072, 1308
Sau96I	GGNCC	2 cut(s)	17, 200
ScaI	AGTACT	1 cut(s)	321
SchI	GAGTC	4 cut(s)	970, 1126, 1268, 1517
ScrFI	CCNGG	1 cut(s)	1170
SfaNI	GCATC	1 cut(s)	487
SfcI	CTRYAG	1 cut(s)	737
Sfr274I	CTCGAG	2 cut(s)	528, 1256
SgrAI	CRCCGGYG	1 cut(s)	1443
SinI	GGWCC	2 cut(s)	17, 200
SlaI	CTCGAG	2 cut(s)	528, 1256
SmiMI	CAYNNNNRTG	2 cut(s)	1112, 1274
SmlI	CTYRAG	3 cut(s)	329, 528, 1256
SmoI	CTYRAG	3 cut(s)	329, 528, 1256
Sse9I	AATT	5 cut(s)	153, 217, 439, 460, 1295
SsiI	CCGC	5 cut(s)	720, 800, 859, 1072, 1343
SspMI	CTAG	6 cut(s)	447, 885, 959, 1121, 1218, 1325
StyD4I	CCNGG	1 cut(s)	1168
TaaI	ACNGT	4 cut(s)	741, 1088, 1166, 1427
TaiI	ACGT	3 cut(s)	1112, 1147, 1397
TaqI	TCGA	4 cut(s)	507, 529, 968, 1257
TaqII	GACCGA	1 cut(s)	188
TasI	AATT	5 cut(s)	153, 217, 439, 460, 1295
TatI	WGTACW	1 cut(s)	319
TauI	GCSGC	1 cut(s)	1074
TfiI	GAWTC	2 cut(s)	928, 955
TscAI	CASTG	4 cut(s)	148, 228, 746, 1432
TseI	GCWGC	4 cut(s)	422, 653, 656, 1307
TspDTI	ATGAA	7 cut(s)	108, 162, 260, 746, 924, 1286, 1470
TspRI	CASTG	4 cut(s)	148, 228, 746, 1432
VpaK11BI	GGWCC	2 cut(s)	17, 200
XapI	RAATTY	1 cut(s)	1295
XhoI	CTCGAG	2 cut(s)	528, 1256
XmiI	GTMKAC	3 cut(s)	94, 397, 772
XmnI	GAANNNNTTC	1 cut(s)	1251
XspI	CTAG	6 cut(s)	447, 885, 959, 1121, 1218, 1325
ZrmI	AGTACT	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.