Rroxscaffold_2G00101610

Serine threonine-protein phosphatase 7 long form homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003095
Physical Location & Seq
Reverse (-)
23528680 .. 23532080
3401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00101610.1

Sequence Viewer

Length: 1071 bp
ATGGGGGGAATGTTGAAGCTAAATTGGTTGAGAGAATTCTTTTCCAAATGTCCTGACGATGCATCAGTTGAAGAAACGGCGCGCCATACACGGGCTTACCTCCTATATCTTGTGGGATGTACAATATTTTCCACAACTACTGGGAATAAAGTCTCTGTTTCATTTCTCACACTATTTGAGAATTTTGATGAAGCTGGAAGATTTGCATGGGGTGCAGCAGCATTGGCGTTCCTCTATAGAGCTCTTGGTAACGCCTCTCTTAAATCTCAAGGCACAATTAGTGGCTCTTTGACACTACTGCAGTGTTGGAGTTATTATCATCTGAATGTTGGCCAACCAAAGTTCAATGAAGAGCCAAACCAGGGTTGTTTTCCATTTGCTCTTAGGTGGAAGGGACGATCTAGTGGAACAAGATCGAAAACTAACATAATTGCCTACCGCAAGGCCTTAGATTCCCTTCAACATTATGATGTTAAGTGGTATCCATACAAAGATTTGGAGTCTACAGTTATACCCGAAGATATAAACAGTAATCTAATTTTACGGACATCAAAAACTATGTTGATATGCTTTGGTAAGGCAGAAAGGCACCTCCCTGATCGTTGCCTCAGGCAGTTTGGCATGCTTCAACCTATCCCAGAGCATCCTCAGAAATGGGAGAGGAAGATTCCTGCTCTTGATCAGGGATTAGACTTTTCAAAGGAGATGGAGGTGGAACTGAAAGGGAAAATACGCTCAGAAATTAGGGAATGGTTAGAGCGTGGTTTCTATATTCTGGAAGACGAGGAAGGTGTGGATGAAAGCGAGTACATGGAGTGGTATGAGAATATTACTCGTAAATATGTTGGAAGGCCTGAATCTTTAGAATCCGAGTTTCAGAGAATGGTTAGTGCTATGAGAGACATGGAAAATATAGCTGATTCATTGCCAATGGCAGAGATGGTTTCCCAAGATAGGAAGTTGCTTGCTGAAGTCAAGAGCACATTGCAAACATGTTTTAATGATGTCGTTGGAAATTCAAAAAAGGGTAGGTGTAAGAATGCTGTAAAGCGTAAGAGGGAGGGAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

356

Amino Acids

40.97

Weight (kDa)

8.02

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 3 - 275 1.3e-66 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 588
AccI GTMKAC 1 cut(s) 503
AccII CGCG 1 cut(s) 82
AciI CCGC 1 cut(s) 439
AcoI YGGCCR 1 cut(s) 331
AcsI RAATTY 3 cut(s) 35, 181, 1015
AcuI CTGAAG 1 cut(s) 990
AfaI GTAC 2 cut(s) 121, 809
AfiI CCNNNNNNNGG 3 cut(s) 91, 362, 954
AflIII ACRYGT 1 cut(s) 992
AgsI TTSAA 7 cut(s) 16, 71, 346, 461, 629, 699, 1020
AjnI CCWGG 1 cut(s) 360
AluBI AGCT 4 cut(s) 19, 194, 242, 917
AluI AGCT 4 cut(s) 19, 194, 242, 917
Alw21I GWGCWC 2 cut(s) 244, 983
Alw26I GTCTC 2 cut(s) 157, 894
AoxI GGCC 3 cut(s) 331, 444, 851
ApeKI GCWGC 2 cut(s) 215, 218
ApoI RAATTY 3 cut(s) 35, 181, 1015
AscI GGCGCGCC 1 cut(s) 80
AspLEI GCGC 2 cut(s) 82, 84
AxyI CCTNAGG 1 cut(s) 608
BalI TGGCCA 1 cut(s) 333
BanI GGYRCC 1 cut(s) 588
BanII GRGCYC 1 cut(s) 244
BbsI GAAGAC 1 cut(s) 786
Bbv12I GWGCWC 2 cut(s) 244, 983
BbvI GCAGC 2 cut(s) 227, 230
BccI CCATC 2 cut(s) 700, 934
BceAI ACGGC 1 cut(s) 93
BciT130I CCWGG 1 cut(s) 362
BciVI GTATCC 1 cut(s) 492
BclI TGATCA 1 cut(s) 679
BcoDI GTCTC 2 cut(s) 157, 894
BfaI CTAG 1 cut(s) 402
BfmI CTRYAG 3 cut(s) 235, 299, 504
BfuI GTATCC 1 cut(s) 492
BisI GCNGC 2 cut(s) 216, 219
BlsI GCNGC 2 cut(s) 217, 220
Bme1390I CCNGG 1 cut(s) 362
BmiI GGNNCC 1 cut(s) 590
BmrFI CCNGG 1 cut(s) 362
BmrI ACTGGG 1 cut(s) 150
BmsI GCATC 3 cut(s) 49, 71, 652
BmuI ACTGGG 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 786
BpuEI CTTGAG 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 361
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 362, 954
Bse1I ACTGG 1 cut(s) 145
Bse21I CCTNAGG 1 cut(s) 608
Bse3DI GCAATG 2 cut(s) 923, 983
BseBI CCWGG 1 cut(s) 362
BseDI CCNNGG 1 cut(s) 361
BseGI GGATG 3 cut(s) 122, 643, 802
BseLI CCNNNNNNNGG 3 cut(s) 91, 362, 954
BseMI GCAATG 2 cut(s) 923, 983
BseMII CTCAG 3 cut(s) 622, 662, 750
BseNI ACTGG 1 cut(s) 145
BsePI GCGCGC 1 cut(s) 80
BseXI GCAGC 2 cut(s) 227, 230
BsgI GTGCAG 1 cut(s) 234
Bsh1236I CGCG 1 cut(s) 82
BshFI GGCC 3 cut(s) 333, 446, 853
BshNI GGYRCC 1 cut(s) 588
BsiHKAI GWGCWC 2 cut(s) 244, 983
BslFI GGGAC 1 cut(s) 408
BslI CCNNNNNNNGG 3 cut(s) 91, 362, 954
BsmAI GTCTC 2 cut(s) 157, 894
BsmFI GGGAC 1 cut(s) 408
BsmI GAATGC 1 cut(s) 1045
BsnI GGCC 3 cut(s) 333, 446, 853
Bsp1286I GDGCHC 2 cut(s) 244, 983
Bsp1407I TGTACA 1 cut(s) 119
Bsp143I GATC 4 cut(s) 398, 413, 598, 679
BspACI CCGC 1 cut(s) 439
BspANI GGCC 3 cut(s) 333, 446, 853
BspCNI CTCAG 3 cut(s) 621, 661, 749
BspFNI CGCG 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 590
BspMAI CTGCAG 1 cut(s) 303
BspQI GCTCTTC 1 cut(s) 345
BspT107I GGYRCC 1 cut(s) 588
BsrDI GCAATG 2 cut(s) 923, 983
BsrGI TGTACA 1 cut(s) 119
BsrI ACTGG 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 361
BssHII GCGCGC 1 cut(s) 80
BssMI GATC 4 cut(s) 398, 413, 598, 679
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 2 cut(s) 508, 530
Bst6I CTCTTC 1 cut(s) 345
BstAPI GCANNNNNTGC 1 cut(s) 212
BstAUI TGTACA 1 cut(s) 119
BstC8I GCNNGC 3 cut(s) 82, 623, 966
BstDEI CTNAG 5 cut(s) 383, 448, 608, 648, 736
BstF5I GGATG 3 cut(s) 122, 643, 802
BstFNI CGCG 1 cut(s) 82
BstHHI GCGC 2 cut(s) 82, 84
BstKTI GATC 4 cut(s) 401, 416, 601, 682
BstMAI GTCTC 2 cut(s) 157, 894
BstMBI GATC 4 cut(s) 398, 413, 598, 679
BstMWI GCNNNNNNNGC 2 cut(s) 212, 224
BstNI CCWGG 1 cut(s) 362
BstNSI RCATGY 2 cut(s) 625, 996
BstSCI CCNGG 1 cut(s) 360
BstSFI CTRYAG 3 cut(s) 235, 299, 504
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 2 cut(s) 227, 230
BstV2I GAAGAC 1 cut(s) 786
Bsu36I CCTNAGG 1 cut(s) 608
BsuI GTATCC 1 cut(s) 492
BsuRI GGCC 3 cut(s) 333, 446, 853
BtsCI GGATG 3 cut(s) 122, 643, 802
BtsI GCAGTG 1 cut(s) 308
BtsIMutI CAGTG 1 cut(s) 308
Cac8I GCNNGC 3 cut(s) 82, 623, 966
CfoI GCGC 2 cut(s) 82, 84
Csp6I GTAC 2 cut(s) 120, 808
CviAII CATG 5 cut(s) 207, 622, 811, 904, 993
CviQI GTAC 2 cut(s) 120, 808
DdeI CTNAG 5 cut(s) 383, 448, 608, 648, 736
DpnI GATC 4 cut(s) 400, 415, 600, 681
DpnII GATC 4 cut(s) 398, 413, 598, 679
EaeI YGGCCR 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
Ecl136II GAGCTC 1 cut(s) 242
Eco147I AGGCCT 2 cut(s) 446, 853
Eco24I GRGCYC 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 990
Eco81I CCTNAGG 1 cut(s) 608
EcoICRI GAGCTC 1 cut(s) 242
EcoRI GAATTC 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 360
EcoT22I ATGCAT 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 244
FaeI CATG 5 cut(s) 210, 625, 814, 907, 996
FaqI GGGAC 1 cut(s) 408
FatI CATG 5 cut(s) 206, 621, 810, 903, 992
FbaI TGATCA 1 cut(s) 679
FblI GTMKAC 1 cut(s) 503
Fnu4HI GCNGC 2 cut(s) 216, 219
FokI GGATG 3 cut(s) 129, 630, 809
FriOI GRGCYC 1 cut(s) 244
Fsp4HI GCNGC 2 cut(s) 216, 219
FspBI CTAG 1 cut(s) 402
GlaI GCGC 2 cut(s) 81, 83
GluI GCNGC 2 cut(s) 216, 219
HaeIII GGCC 3 cut(s) 333, 446, 853
HhaI GCGC 2 cut(s) 82, 84
Hin1II CATG 5 cut(s) 210, 625, 814, 907, 996
Hin6I GCGC 2 cut(s) 80, 82
HinP1I GCGC 2 cut(s) 80, 82
HinfI GANTC 6 cut(s) 452, 500, 667, 857, 866, 920
Hpy166II GTNNAC 1 cut(s) 504
Hpy188I TCNGA 5 cut(s) 324, 651, 739, 871, 879
Hpy188III TCNNGA 4 cut(s) 53, 677, 776, 976
Hpy8I GTNNAC 1 cut(s) 504
HpyAV CCTTC 4 cut(s) 385, 467, 782, 843
HpyCH4III ACNGT 2 cut(s) 508, 530
HpyCH4V TGCA 5 cut(s) 62, 206, 215, 301, 988
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 224
HpyF3I CTNAG 5 cut(s) 383, 448, 608, 648, 736
Hsp92II CATG 5 cut(s) 210, 625, 814, 907, 996
HspAI GCGC 2 cut(s) 80, 82
Ksp22I TGATCA 1 cut(s) 679
Kzo9I GATC 4 cut(s) 398, 413, 598, 679
LguI GCTCTTC 1 cut(s) 345
Lsp1109I GCAGC 2 cut(s) 227, 230
LweI GCATC 3 cut(s) 49, 71, 652
MaeI CTAG 1 cut(s) 402
MaeIII GTNAC 1 cut(s) 248
MalI GATC 4 cut(s) 400, 415, 600, 681
MboI GATC 4 cut(s) 398, 413, 598, 679
MboII GAAGA 6 cut(s) 83, 210, 362, 530, 676, 791
MhlI GDGCHC 2 cut(s) 244, 983
MlsI TGGCCA 1 cut(s) 333
MluCI AATT 8 cut(s) 22, 35, 181, 276, 429, 537, 741, 1015
MluNI TGGCCA 1 cut(s) 333
MlyI GAGTC 1 cut(s) 509
MmeI TCCRAC 3 cut(s) 287, 826, 991
Mox20I TGGCCA 1 cut(s) 333
Mph1103I ATGCAT 1 cut(s) 64
MscI TGGCCA 1 cut(s) 333
MseI TTAA 3 cut(s) 261, 474, 999
MslI CAYNNNNRTG 2 cut(s) 324, 468
Msp20I TGGCCA 1 cut(s) 333
MspR9I CCNGG 1 cut(s) 362
Mva1269I GAATGC 1 cut(s) 1045
MvaI CCWGG 1 cut(s) 362
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 2 cut(s) 212, 224
NdeII GATC 4 cut(s) 398, 413, 598, 679
NlaIII CATG 5 cut(s) 210, 625, 814, 907, 996
NlaIV GGNNCC 1 cut(s) 590
NsiI ATGCAT 1 cut(s) 64
NspI RCATGY 2 cut(s) 625, 996
PaeI GCATGC 1 cut(s) 625
PalAI GGCGCGCC 1 cut(s) 80
PauI GCGCGC 1 cut(s) 80
PceI AGGCCT 2 cut(s) 446, 853
PciI ACATGT 1 cut(s) 992
PciSI GCTCTTC 1 cut(s) 345
PctI GAATGC 1 cut(s) 1045
PfeI GAWTC 5 cut(s) 452, 667, 857, 866, 920
PkrI GCNGC 2 cut(s) 217, 220
PleI GAGTC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 508
PscI ACATGT 1 cut(s) 992
Psp124BI GAGCTC 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 360
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 1 cut(s) 590
PstI CTGCAG 1 cut(s) 303
PteI GCGCGC 1 cut(s) 80
RsaI GTAC 2 cut(s) 121, 809
RsaNI GTAC 2 cut(s) 120, 808
RseI CAYNNNNRTG 2 cut(s) 324, 468
SacI GAGCTC 1 cut(s) 244
SapI GCTCTTC 1 cut(s) 345
SaqAI TTAA 3 cut(s) 261, 474, 999
SatI GCNGC 2 cut(s) 216, 219
Sau3AI GATC 4 cut(s) 398, 413, 598, 679
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 1 cut(s) 362
SduI GDGCHC 2 cut(s) 244, 983
SfaNI GCATC 3 cut(s) 49, 71, 652
SfcI CTRYAG 3 cut(s) 235, 299, 504
SgsI GGCGCGCC 1 cut(s) 80
SmiMI CAYNNNNRTG 2 cut(s) 324, 468
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
SphI GCATGC 1 cut(s) 625
Sse9I AATT 8 cut(s) 22, 35, 181, 276, 429, 537, 741, 1015
SseBI AGGCCT 2 cut(s) 446, 853
SsiI CCGC 1 cut(s) 439
SspI AATATT 2 cut(s) 126, 829
SspMI CTAG 1 cut(s) 402
SstI GAGCTC 1 cut(s) 244
StuI AGGCCT 2 cut(s) 446, 853
StyD4I CCNGG 1 cut(s) 360
TaaI ACNGT 2 cut(s) 508, 530
TaqI TCGA 1 cut(s) 416
TasI AATT 8 cut(s) 22, 35, 181, 276, 429, 537, 741, 1015
TatI WGTACW 2 cut(s) 119, 807
TfiI GAWTC 5 cut(s) 452, 667, 857, 866, 920
Tru1I TTAA 3 cut(s) 261, 474, 999
Tru9I TTAA 3 cut(s) 261, 474, 999
TscAI CASTG 1 cut(s) 308
TseI GCWGC 2 cut(s) 215, 218
TspDTI ATGAA 5 cut(s) 150, 204, 363, 813, 912
TspGWI ACGGA 1 cut(s) 559
TspRI CASTG 1 cut(s) 308
XapI RAATTY 3 cut(s) 35, 181, 1015
XceI RCATGY 2 cut(s) 625, 996
XmiI GTMKAC 1 cut(s) 503
XspI CTAG 1 cut(s) 402
Zsp2I ATGCAT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.