Rorug02G0384200

Serine threonine-protein phosphatase 7 long form homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003095
Physical Location & Seq
Reverse (-)
49009706 .. 49014673
4968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0384200.1

Sequence Viewer

Length: 2658 bp
ATGAACTTCAGGTTCCAGAACCTTCTGGGAGCGCCGTACCGGGGAGGGAACGCCGTCATCGTCAACAACACGGAGCTAATCTCACCGGTGGGGAACAGAGTCTCCGTCACCAACCTCCGTGACTCCGAGACCATAACCCTACCCATCCAATCCTCCTCCAACATAACCCGCCTCGCCGCCTCTCCCGACGGCGTCTTCCTCCTCACCGTCGACGAGAAGCACCGCTGCCTCTTCATCAACCTCCGCCGCCGCGTGGTTCTCCACCGCATTTCCTTCAAGAGCGCCGTCGCCGCCGTCAAGTTCAGCCCCGACGGCGGTTACATTGCGGTGGCCACCGGTAAGTTGGTCCAGATTTGGCGCTCGCCGGGGTTTAAGAAAGAGTTCTTTCCGTTTGAATTGGTTAAGACTTTTGCTGATTGTGATGATAAGGTCACGGCGTTGGAGTGGAGCCCCGATTCGGTTTATGTGCTGGCCGGGTCGAAAGACTTGACTGCTAGGATTTTCTGTATGAAAAAGTTTAAATTGGGAGGGGTAAAGATTAAGCCTTTTATGTTTTTGGGGCATAGGGATACAGTAGTGGGTGTGTTTTTCGGTGTTGATAAGAATGCCGGTAAGGTAAGCCGGGTTTATACAGTTGCGCGTGACGGTTATATGTTTGTGTGGGGTTTAAGTGGAGATGATGAGGAGGTGCCGTCACCAGAGAGGGATGGAGAAGGCAATGTGGAAGGTGATGGTAGTGTTGTTGTGAAGAAAAGGAAGGGGTTTGAGGGAAATGACGGTGAGTTGAATAAAGAAGGTGGGTATTTGATAAATAGGAAATGGGAGTTGTTGAAGAAAGAAAGTTTTGGGCAGGCGTCGATGAAGGTGACGGCATGTGATTATCATAGGGGGCTGGATATGTTGGTTGTGGGGTTCTCAAAGGGTGTGTTTGCGCTGTATCAAATGCCGGATTTCGTGTGCATTCACAGATTGTCGATATCTAGAGAGAAAATTACAACAGCGGTTTTTAATGAGCTTGGGAATTGGCTGACATTTGGGTGTGCAAAACTTGGACAGTTGCTTGTTTGGGAGTGGCGGTCTGAGAGTTATATTTTGAAGCAGCAGGGGCATTACTTTGATGTGAATTGTGTTGCTTATTCGCCTGATTCACAACTCTTAGCCACTGGGGCAGATGATAACAAAGTGAAGGTCTGGAATGTTTCTTCAGGATTCTGTTTTGTAACATTCTCTGAGCATGAAAATGCAATAACTGCACTCCACTTTTTGGCTAACAAAAATACGCTCTTAAGTGCCTCTTTGGATGGGACTGTTCGTGCATGGGATTTTTTCCGTTATCGAAATTTTAAGACATATACCACCGCAGAACCAAGACAATTTGTTTCTTTGACAGCAACTCAGAGTGGTGAAGTGATTTGTGCTGGAACTCTTGATACCTTTGAGATTTTTGTTTGGGATATGAGGACAGGCAACGTGAAGGACATTCTTAGTGGTCATGAAGGTCCTGTACATGGTTTGGCGTTTTCTCCTACAGATGCAAATGTTTTAGCTTCATCGTCGTGGGACAGAACAGTTCGGTTGTGGGATGTTTTTGAATCAAAAGGTGGTGTTGAAACATTTCCACACACACATGATGTTCTTACAGTAGTTTACCGCCCAGATGGAAAGCAATTGGCTTGCAGCACATTAGAAGGTCATATTCATTTCTGGGACCCAATTGATGGCGTATTAATGTATACCATTGAGGGTCGTAGGGATATTTCTGGTGGTCGTCTTATGACTGATCGTAGAACAGCTGCCAACTCAAGTTCAGGAAAGTTCTTTACAACCTTGTGTTATTCTGCTGATGGGAGTTACATATTAGCTGGGGGAAGTAGTAAATACATCTGCATGTATGATGTTGCTGATCAGGTATTACTGCGGAAGTTTCAAATAACTCACAATTTATCTTTGGATGGAGTTCTTGACTTCTTAAACTCAAAGAATATGACAGATGCTGGCCCCCTGGATCTAATTGATAATGATGACAGTGATATAGAAGAAGGTATTGACAAACAAACCCGGGGAAAGTTGGGTTATGATTTACCAGGGTCCATGCCTAATCGTGGAAGGCCTGTTGTTAGAACTAAATGCCTGAAAATTGCACCCACTGGTAGGAGCTTCTCAACAGCAACAACAGAGGGAGTTCTAGTTTATTCTATTGATGATTCCTTTATCTTTGACCCAACTGATCTCGACATGGATGTCACGCCTGAGGGAGTTGATGCAGCACTGAATGAAGAACAAGTAACCAAAGCTTTAATCCTTAGTCTTAGACTAAATGAAGACTCTCTAATTAAGAAATGTATTTTTGCTGTCAATTCAATAGACATCCCTATGGTTGCCTCATCAATCCCTAACAGATATTTAGAAAGATTAATTGAGGTATTTGCACATCTTTTGGAAAAATGCCCACATTTGGAGTTCATACTTAAGTGGTGTCAGGAAATCTGCAAAGCTCATGGTAACTCCATTCAACAAAATTCTCAAAAACTGAAGCCTGCTTTAATATCCTTGCAGAAAGCAATTACGAGAACACATCAAGATTTGGCAAATACATGTGATTCCAATGAGTGTACGCTCCGTTATTTATGTTCAAAAACCTCTATTGAAAATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

885

Amino Acids

98.54

Weight (kDa)

6.29

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 38 - 172 1.6e-11 THOC3 beta-propeller domain
WD40_Prp19 PF24814 39 - 162 2.9e-11 Prp19 WD40 domain
Beta-prop_EML_2 PF23414 58 - 174 1.6e-07 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5 PF25175 93 - 202 8.1e-10 WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 277 - 465 6.5e-12 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 282 - 399 1.1e-06 WDR36/Utp21 first beta-propeller
WD40_Prp19 PF24814 282 - 477 3.4e-21 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 283 - 454 1.2e-18 CDC20/Fizzy WD40 domain
WDR55 PF24796 288 - 570 3.1e-22 WDR55
Beta-prop_THOC3 PF25174 289 - 421 8.2e-15 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 289 - 477 7.5e-25 WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 300 - 442 5.2e-09 WDR36/Utp21 first beta-propeller
WD40_MABP1-WDR62_1st PF24780 306 - 421 8.2e-06 MABP1/WDR62 first WD40 domain
Beta-prop_EML PF23409 308 - 476 8.7e-08 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR3_1st PF25173 312 - 477 1.5e-24 WDR3 first beta-propeller domain
Beta-prop_EML_2 PF23414 335 - 469 6.3e-12 Echinoderm microtubule-associated protein second beta-propeller
WDR90_beta-prop_4th PF23342 345 - 437 5.8e-06 WDR90, 4th beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 349 - 462 4.2e-09 WDR36/Utp21 first beta-propeller
WD40_MABP1-WDR62_2nd PF24782 349 - 569 3.8e-10 MABP1/WDR62 second WD40 domain
WD40_Gbeta PF25391 356 - 528 5.8e-21 G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd PF25172 364 - 484 2.2e-15 WDR3 second beta-propeller domain
WD40 PF00400 366 - 399 1.4e-09 WD domain, G-beta repeat
Beta-prop_TEP1_2nd PF25047 367 - 486 6.8e-10 TEP-1 second beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 368 - 446 1.4e-06 CAF1B/HIR1 beta-propeller domain
WD40_WDHD1_1st PF24817 373 - 453 1.5e-14 WDHD1 first WD40 domain
Beta-prop_WDR90_POC16_2nd PF23393 376 - 441 9.8e-06 WDR90/POC16, second beta-propeller
Beta-prop_WDR75_1st PF23869 380 - 460 1.7e-06 WD repeat-containing protein 75 first beta-propeller
WD40 PF00400 405 - 441 2.4e-06 WD domain, G-beta repeat
WD40_CDC20-Fz PF24807 414 - 587 5e-15 CDC20/Fizzy WD40 domain
Beta-prop_EML_2 PF23414 418 - 574 1.4e-10 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_2nd PF25168 442 - 562 4.6e-10 WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st PF24817 461 - 649 1.1e-17 WDHD1 first WD40 domain
EIF3I PF24805 467 - 644 1.7e-06 EIF3I
Beta-prop_WDR5 PF25175 468 - 643 1.2e-17 WDR5 beta-propeller domain
Beta-prop_EML PF23409 480 - 647 8.5e-10 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR3_1st PF25173 480 - 603 6.7e-15 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 481 - 643 1.7e-10 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 482 - 571 1.1e-16 THOC3 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 492 - 583 6.9e-06 TEP-1 second beta-propeller
WD40 PF00400 493 - 528 1.4e-08 WD domain, G-beta repeat
Beta-prop_EML_2 PF23414 502 - 638 2e-08 Echinoderm microtubule-associated protein second beta-propeller
Utp12 PF04003 773 - 878 2e-23 Dip2/Utp12 Family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2240
AccB1I GGYRCC 1 cut(s) 688
AccB7I CCANNNNNTGG 2 cut(s) 1264, 1718
AccI GTMKAC 2 cut(s) 210, 1733
AccII CGCG 2 cut(s) 252, 640
AclWI GGATC 1 cut(s) 2013
AcoI YGGCCR 2 cut(s) 330, 471
AcsI RAATTY 2 cut(s) 1339, 2518
AcuI CTGAAG 2 cut(s) 1188, 2552
AcyI GRCGYC 2 cut(s) 192, 854
AfaI GTAC 3 cut(s) 38, 1506, 2614
AflII CTTAAG 2 cut(s) 1285, 2468
AflIII ACRYGT 1 cut(s) 2594
AgeI ACCGGT 2 cut(s) 85, 335
AjnI CCWGG 2 cut(s) 2001, 2083
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AluBI AGCT 8 cut(s) 76, 1015, 1547, 1793, 1862, 2157, 2294, 2495
AluI AGCT 8 cut(s) 76, 1015, 1547, 1793, 1862, 2157, 2294, 2495
Alw26I GTCTC 2 cut(s) 106, 122
AlwI GGATC 1 cut(s) 2013
AlwNI CAGNNNCTG 1 cut(s) 1994
Ama87I CYCGRG 1 cut(s) 2058
AoxI GGCC 4 cut(s) 330, 471, 1996, 2108
ApeKI GCWGC 5 cut(s) 225, 1099, 1677, 1793, 2264
ApoI RAATTY 2 cut(s) 1339, 2518
ArsI GACNNNNNNTTYG 2 cut(s) 1173, 1205
AseI ATTAAT 2 cut(s) 1727, 2414
AsiGI ACCGGT 2 cut(s) 85, 335
Asp700I GAANNNNTTC 2 cut(s) 380, 1614
AspLEI GCGC 5 cut(s) 34, 284, 360, 640, 934
AspS9I GGNCC 5 cut(s) 346, 1499, 1708, 1997, 2088
AsuC2I CCSGG 6 cut(s) 41, 366, 475, 623, 2059, 2060
AsuHPI GGTGA 8 cut(s) 75, 100, 196, 687, 740, 791, 877, 1415
AvaI CYCGRG 1 cut(s) 2058
AvaII GGWCC 4 cut(s) 346, 1499, 1708, 2088
AxyI CCTNAGG 1 cut(s) 2250
BaeI ACNNNNGTAYC 2 cut(s) 561, 594
BalI TGGCCA 1 cut(s) 332
BanI GGYRCC 1 cut(s) 688
BanII GRGCYC 1 cut(s) 452
BarI GAAGNNNNNNTAC 2 cut(s) 1488, 1520
BbsI GAAGAC 2 cut(s) 187, 2328
BbvI GCAGC 5 cut(s) 212, 1111, 1689, 1780, 2276
BccI CCATC 8 cut(s) 152, 701, 725, 1295, 1652, 1712, 1838, 1946
BceAI ACGGC 9 cut(s) 19, 38, 205, 269, 278, 328, 450, 676, 885
BciT130I CCWGG 2 cut(s) 2003, 2085
BciVI GTATCC 1 cut(s) 562
BclI TGATCA 1 cut(s) 1903
BcnI CCSGG 6 cut(s) 41, 366, 475, 623, 2059, 2060
BcoDI GTCTC 2 cut(s) 106, 122
BfaI CTAG 3 cut(s) 495, 981, 2186
BfmI CTRYAG 1 cut(s) 1527
BfoI RGCGCY 3 cut(s) 35, 285, 361
BfrI CTTAAG 2 cut(s) 1285, 2468
BfuI GTATCC 1 cut(s) 562
BglI GCCNNNNNGGC 2 cut(s) 312, 1166
BisI GCNGC 9 cut(s) 177, 226, 247, 250, 291, 1100, 1678, 1794, 2265
BlsI GCNGC 9 cut(s) 178, 227, 248, 251, 292, 1101, 1679, 1795, 2266
Bme1390I CCNGG 8 cut(s) 41, 366, 475, 623, 2003, 2059, 2060, 2085
Bme18I GGWCC 4 cut(s) 346, 1499, 1708, 2088
BmeT110I CYCGRG 1 cut(s) 2058
BmgT120I GGNCC 5 cut(s) 346, 1499, 1708, 1997, 2088
BmiI GGNNCC 7 cut(s) 14, 449, 690, 1709, 1710, 1999, 2089
BmrFI CCNGG 8 cut(s) 41, 366, 475, 623, 2003, 2059, 2060, 2085
BmrI ACTGGG 1 cut(s) 1173
BmsI GCATC 3 cut(s) 1522, 1981, 2251
BmuI ACTGGG 1 cut(s) 1173
BpiI GAAGAC 2 cut(s) 187, 2328
BplI GAGNNNNNCTC 2 cut(s) 65, 97
BpuEI CTTGAG 1 cut(s) 1786
BpuMI CCSGG 6 cut(s) 41, 366, 475, 623, 2059, 2060
BsaHI GRCGYC 2 cut(s) 192, 854
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 6 cut(s) 40, 365, 2001, 2058, 2059, 2084
BsaWI WCCGGW 2 cut(s) 85, 335
BsaXI ACNNNNNCTCC 8 cut(s) 86, 116, 677, 707, 1061, 1091, 2172, 2202
Bse118I RCCGGY 3 cut(s) 85, 335, 608
Bse1I ACTGG 2 cut(s) 1168, 2152
Bse21I CCTNAGG 1 cut(s) 2250
Bse3DI GCAATG 2 cut(s) 321, 724
BseBI CCWGG 2 cut(s) 2003, 2085
BseDI CCNNGG 6 cut(s) 40, 365, 2001, 2058, 2059, 2084
BseGI GGATG 7 cut(s) 144, 712, 1306, 1588, 1957, 2245, 2367
BseMI GCAATG 2 cut(s) 321, 724
BseMII CTCAG 4 cut(s) 1071, 1221, 1409, 2241
BseNI ACTGG 2 cut(s) 1168, 2152
BseRI GAGGAG 3 cut(s) 145, 191, 698
BseXI GCAGC 5 cut(s) 212, 1111, 1689, 1780, 2276
BseYI CCCAGC 1 cut(s) 1862
BsgI GTGCAG 1 cut(s) 1236
Bsh1236I CGCG 2 cut(s) 252, 640
BshFI GGCC 4 cut(s) 332, 473, 1998, 2110
BshNI GGYRCC 1 cut(s) 688
BshTI ACCGGT 2 cut(s) 85, 335
BsiHKCI CYCGRG 1 cut(s) 2058
BsiSI CCGG 9 cut(s) 40, 86, 336, 365, 474, 609, 622, 947, 2059
BslFI GGGAC 3 cut(s) 1318, 1574, 1721
BsmAI GTCTC 2 cut(s) 106, 122
BsmFI GGGAC 3 cut(s) 1318, 1574, 1721
BsmI GAATGC 2 cut(s) 610, 960
BsnI GGCC 4 cut(s) 332, 473, 1998, 2110
Bso31I GGTCTC 1 cut(s) 122
BsoBI CYCGRG 1 cut(s) 2058
Bsp1286I GDGCHC 1 cut(s) 452
Bsp1407I TGTACA 1 cut(s) 1504
Bsp143I GATC 4 cut(s) 1780, 1903, 2005, 2227
BspANI GGCC 4 cut(s) 332, 473, 1998, 2110
BspCNI CTCAG 4 cut(s) 1072, 1222, 1408, 2242
BspFNI CGCG 2 cut(s) 252, 640
BspHI TCATGA 1 cut(s) 1492
BspLI GGNNCC 7 cut(s) 14, 449, 690, 1709, 1710, 1999, 2089
BspPI GGATC 1 cut(s) 2013
BspT107I GGYRCC 1 cut(s) 688
BspTI CTTAAG 2 cut(s) 1285, 2468
BspTNI GGTCTC 1 cut(s) 122
BsrDI GCAATG 2 cut(s) 321, 724
BsrFI RCCGGY 3 cut(s) 85, 335, 608
BsrGI TGTACA 1 cut(s) 1504
BsrI ACTGG 2 cut(s) 1168, 2152
BssAI RCCGGY 3 cut(s) 85, 335, 608
BssECI CCNNGG 6 cut(s) 40, 365, 2001, 2058, 2059, 2084
BssMI GATC 4 cut(s) 1780, 1903, 2005, 2227
BssNAI GTATAC 1 cut(s) 1734
BssNI GRCGYC 2 cut(s) 192, 854
Bst1107I GTATAC 1 cut(s) 1734
Bst2UI CCWGG 2 cut(s) 2003, 2085
Bst6I CTCTTC 1 cut(s) 236
BstACI GRCGYC 2 cut(s) 192, 854
BstAFI CTTAAG 2 cut(s) 1285, 2468
BstAPI GCANNNNNTGC 1 cut(s) 1250
BstAUI TGTACA 1 cut(s) 1504
BstC8I GCNNGC 6 cut(s) 362, 471, 852, 1675, 1996, 2538
BstDEI CTNAG 8 cut(s) 1080, 1156, 1230, 1395, 1484, 2250, 2303, 2309
BstF5I GGATG 7 cut(s) 144, 712, 1306, 1588, 1957, 2245, 2367
BstFNI CGCG 2 cut(s) 252, 640
BstH2I RGCGCY 3 cut(s) 35, 285, 361
BstHHI GCGC 5 cut(s) 34, 284, 360, 640, 934
BstKTI GATC 4 cut(s) 1783, 1906, 2008, 2230
BstMAI GTCTC 2 cut(s) 106, 122
BstMBI GATC 4 cut(s) 1780, 1903, 2005, 2227
BstMWI GCNNNNNNNGC 5 cut(s) 290, 312, 1105, 1166, 1250
BstNI CCWGG 2 cut(s) 2003, 2085
BstNSI RCATGY 3 cut(s) 876, 1891, 2598
BstSCI CCNGG 8 cut(s) 39, 364, 473, 621, 2001, 2057, 2058, 2083
BstSFI CTRYAG 1 cut(s) 1527
BstUI CGCG 2 cut(s) 252, 640
BstV1I GCAGC 5 cut(s) 212, 1111, 1689, 1780, 2276
BstV2I GAAGAC 2 cut(s) 187, 2328
BstX2I RGATCY 1 cut(s) 2005
BstYI RGATCY 1 cut(s) 2005
BstZ17I GTATAC 1 cut(s) 1734
Bsu36I CCTNAGG 1 cut(s) 2250
BsuI GTATCC 1 cut(s) 562
BsuRI GGCC 4 cut(s) 332, 473, 1998, 2110
BtsCI GGATG 7 cut(s) 144, 712, 1306, 1588, 1957, 2245, 2367
BtsIMutI CAGTG 4 cut(s) 1161, 2032, 2145, 2267
Cac8I GCNNGC 6 cut(s) 362, 471, 852, 1675, 1996, 2538
CaiI CAGNNNCTG 1 cut(s) 1994
CciI TCATGA 1 cut(s) 1492
CfoI GCGC 5 cut(s) 34, 284, 360, 640, 934
Cfr10I RCCGGY 3 cut(s) 85, 335, 608
Cfr13I GGNCC 5 cut(s) 346, 1499, 1708, 1997, 2088
Cfr9I CCCGGG 1 cut(s) 2058
CseI GACGC 2 cut(s) 181, 843
Csp6I GTAC 3 cut(s) 37, 1505, 2613
CspAI ACCGGT 2 cut(s) 85, 335
CviQI GTAC 3 cut(s) 37, 1505, 2613
DdeI CTNAG 8 cut(s) 1080, 1156, 1230, 1395, 1484, 2250, 2303, 2309
DpnI GATC 4 cut(s) 1782, 1905, 2007, 2229
DpnII GATC 4 cut(s) 1780, 1903, 2005, 2227
DraI TTTAAA 1 cut(s) 520
DrdI GACNNNNNNGTC 1 cut(s) 2240
DseDI GACNNNNNNGTC 1 cut(s) 2240
EaeI YGGCCR 2 cut(s) 330, 471
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
EciI GGCGGA 1 cut(s) 233
Eco147I AGGCCT 1 cut(s) 2110
Eco24I GRGCYC 1 cut(s) 452
Eco31I GGTCTC 1 cut(s) 122
Eco32I GATATC 1 cut(s) 978
Eco47I GGWCC 4 cut(s) 346, 1499, 1708, 2088
Eco57I CTGAAG 2 cut(s) 1188, 2552
Eco81I CCTNAGG 1 cut(s) 2250
Eco88I CYCGRG 1 cut(s) 2058
EcoO109I RGGNCCY 2 cut(s) 1499, 1708
EcoRII CCWGG 2 cut(s) 2001, 2083
EcoRV GATATC 1 cut(s) 978
EcoT38I GRGCYC 1 cut(s) 452
FalI AAGNNNNNCTT 2 cut(s) 1279, 1311
FaqI GGGAC 3 cut(s) 1318, 1574, 1721
FauI CCCGC 1 cut(s) 176
FbaI TGATCA 1 cut(s) 1903
FblI GTMKAC 2 cut(s) 210, 1733
Fnu4HI GCNGC 9 cut(s) 177, 226, 247, 250, 291, 1100, 1678, 1794, 2265
FokI GGATG 7 cut(s) 131, 719, 1313, 1595, 1964, 2252, 2354
FriOI GRGCYC 1 cut(s) 452
Fsp4HI GCNGC 9 cut(s) 177, 226, 247, 250, 291, 1100, 1678, 1794, 2265
FspBI CTAG 3 cut(s) 495, 981, 2186
GlaI GCGC 5 cut(s) 33, 283, 359, 639, 933
GluI GCNGC 9 cut(s) 177, 226, 247, 250, 291, 1100, 1678, 1794, 2265
GsaI CCCAGC 1 cut(s) 1866
HaeII RGCGCY 3 cut(s) 35, 285, 361
HaeIII GGCC 4 cut(s) 332, 473, 1998, 2110
HapII CCGG 9 cut(s) 40, 86, 336, 365, 474, 609, 622, 947, 2059
HgaI GACGC 2 cut(s) 181, 843
HhaI GCGC 5 cut(s) 34, 284, 360, 640, 934
Hin1I GRCGYC 2 cut(s) 192, 854
Hin6I GCGC 5 cut(s) 32, 282, 358, 638, 932
HinP1I GCGC 5 cut(s) 32, 282, 358, 638, 932
HincII GTYRAC 2 cut(s) 64, 211
HindII GTYRAC 2 cut(s) 64, 211
HindIII AAGCTT 1 cut(s) 2292
HinfI GANTC 9 cut(s) 99, 122, 455, 1145, 1209, 1592, 2204, 2324, 2600
HpaII CCGG 9 cut(s) 40, 86, 336, 365, 474, 609, 622, 947, 2059
HphI GGTGA 8 cut(s) 75, 100, 196, 687, 740, 791, 877, 1415
Hpy166II GTNNAC 5 cut(s) 64, 211, 1648, 1734, 2613
Hpy188I TCNGA 4 cut(s) 127, 1081, 1231, 1398
Hpy8I GTNNAC 5 cut(s) 64, 211, 1648, 1734, 2613
Hpy99I CGWCG 7 cut(s) 191, 212, 215, 290, 314, 859, 1558
HpyCH4IV ACGT 1 cut(s) 1470
HpyF10VI GCNNNNNNNGC 5 cut(s) 290, 312, 1105, 1166, 1250
HpyF3I CTNAG 8 cut(s) 1080, 1156, 1230, 1395, 1484, 2250, 2303, 2309
HpySE526I ACGT 1 cut(s) 1470
Hsp92I GRCGYC 2 cut(s) 192, 854
HspAI GCGC 5 cut(s) 32, 282, 358, 638, 932
KflI GGGWCCC 1 cut(s) 1708
Ksp22I TGATCA 1 cut(s) 1903
Kzo9I GATC 4 cut(s) 1780, 1903, 2005, 2227
LmnI GCTCC 5 cut(s) 29, 73, 447, 2154, 2622
Lsp1109I GCAGC 5 cut(s) 212, 1111, 1689, 1780, 2276
LweI GCATC 3 cut(s) 1522, 1981, 2251
MaeI CTAG 3 cut(s) 495, 981, 2186
MaeII ACGT 1 cut(s) 1470
MalI GATC 4 cut(s) 1782, 1905, 2007, 2229
MboI GATC 4 cut(s) 1780, 1903, 2005, 2227
MboII GAAGA 8 cut(s) 187, 223, 760, 844, 1194, 2048, 2288, 2333
MfeI CAATTG 2 cut(s) 1667, 1713
MflI RGATCY 1 cut(s) 2005
MhlI GDGCHC 1 cut(s) 452
MlsI TGGCCA 1 cut(s) 332
MluNI TGGCCA 1 cut(s) 332
MlyI GAGTC 3 cut(s) 108, 116, 2318
MmeI TCCRAC 2 cut(s) 183, 420
Mox20I TGGCCA 1 cut(s) 332
MroXI GAANNNNTTC 2 cut(s) 380, 1614
MscI TGGCCA 1 cut(s) 332
MslI CAYNNNNRTG 7 cut(s) 326, 1036, 1239, 1555, 1626, 1886, 2372
Msp20I TGGCCA 1 cut(s) 332
MspA1I CMGCKG 3 cut(s) 225, 1001, 1793
MspCI CTTAAG 2 cut(s) 1285, 2468
MspI CCGG 9 cut(s) 40, 86, 336, 365, 474, 609, 622, 947, 2059
MspR9I CCNGG 8 cut(s) 41, 366, 475, 623, 2003, 2059, 2060, 2085
MunI CAATTG 2 cut(s) 1667, 1713
Mva1269I GAATGC 2 cut(s) 610, 960
MvaI CCWGG 2 cut(s) 2003, 2085
MvnI CGCG 2 cut(s) 252, 640
MwoI GCNNNNNNNGC 5 cut(s) 290, 312, 1105, 1166, 1250
NciI CCSGG 6 cut(s) 41, 366, 475, 623, 2059, 2060
NdeII GATC 4 cut(s) 1780, 1903, 2005, 2227
NlaIV GGNNCC 7 cut(s) 14, 449, 690, 1709, 1710, 1999, 2089
NmuCI GTSAC 7 cut(s) 106, 119, 430, 641, 693, 865, 2242
NspI RCATGY 3 cut(s) 876, 1891, 2598
PagI TCATGA 1 cut(s) 1492
PceI AGGCCT 1 cut(s) 2110
PciI ACATGT 1 cut(s) 2594
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PctI GAATGC 2 cut(s) 610, 960
PdmI GAANNNNTTC 2 cut(s) 380, 1614
PfeI GAWTC 6 cut(s) 455, 1145, 1209, 1592, 2204, 2600
PflFI GACNNNGTC 1 cut(s) 191
PflMI CCANNNNNTGG 2 cut(s) 1264, 1718
PinAI ACCGGT 2 cut(s) 85, 335
PkrI GCNGC 9 cut(s) 178, 227, 248, 251, 292, 1101, 1679, 1795, 2266
PleI GAGTC 3 cut(s) 107, 116, 2318
PpsI GAGTC 3 cut(s) 107, 116, 2318
PpuMI RGGWCCY 2 cut(s) 1499, 1708
PscI ACATGT 1 cut(s) 2594
PshBI ATTAAT 2 cut(s) 1727, 2414
Psp5II RGGWCCY 2 cut(s) 1499, 1708
Psp6I CCWGG 2 cut(s) 2001, 2083
PspFI CCCAGC 1 cut(s) 1862
PspGI CCWGG 2 cut(s) 2001, 2083
PspN4I GGNNCC 7 cut(s) 14, 449, 690, 1709, 1710, 1999, 2089
PspPI GGNCC 5 cut(s) 346, 1499, 1708, 1997, 2088
PspPPI RGGWCCY 2 cut(s) 1499, 1708
PsrI GAACNNNNNNTAC 2 cut(s) 1414, 1446
PstNI CAGNNNCTG 1 cut(s) 1994
PsuI RGATCY 1 cut(s) 2005
PsyI GACNNNGTC 1 cut(s) 191
PvuII CAGCTG 1 cut(s) 1793
RsaI GTAC 3 cut(s) 38, 1506, 2614
RsaNI GTAC 3 cut(s) 37, 1505, 2613
RseI CAYNNNNRTG 7 cut(s) 326, 1036, 1239, 1555, 1626, 1886, 2372
SalI GTCGAC 1 cut(s) 209
SatI GCNGC 9 cut(s) 177, 226, 247, 250, 291, 1100, 1678, 1794, 2265
Sau3AI GATC 4 cut(s) 1780, 1903, 2005, 2227
Sau96I GGNCC 5 cut(s) 346, 1499, 1708, 1997, 2088
SchI GAGTC 3 cut(s) 108, 116, 2318
ScrFI CCNGG 8 cut(s) 41, 366, 475, 623, 2003, 2059, 2060, 2085
SduI GDGCHC 1 cut(s) 452
SfaNI GCATC 3 cut(s) 1522, 1981, 2251
SfcI CTRYAG 1 cut(s) 1527
SgrAI CRCCGGYG 1 cut(s) 85
SgrDI CGTCGACG 1 cut(s) 209
SinI GGWCC 4 cut(s) 346, 1499, 1708, 2088
SmaI CCCGGG 1 cut(s) 2060
SmiMI CAYNNNNRTG 7 cut(s) 326, 1036, 1239, 1555, 1626, 1886, 2372
SmlI CTYRAG 3 cut(s) 1285, 1801, 2468
SmoI CTYRAG 3 cut(s) 1285, 1801, 2468
SseBI AGGCCT 1 cut(s) 2110
SspMI CTAG 3 cut(s) 495, 981, 2186
StuI AGGCCT 1 cut(s) 2110
StyD4I CCNGG 8 cut(s) 39, 364, 473, 621, 2001, 2057, 2058, 2083
TaiI ACGT 1 cut(s) 1473
TaqI TCGA 6 cut(s) 210, 479, 857, 974, 1336, 2232
TatI WGTACW 1 cut(s) 1504
TauI GCSGC 4 cut(s) 179, 249, 252, 293
TfiI GAWTC 6 cut(s) 455, 1145, 1209, 1592, 2204, 2600
TscAI CASTG 4 cut(s) 1168, 2032, 2152, 2274
TseFI GTSAC 7 cut(s) 106, 119, 430, 641, 693, 865, 2242
TseI GCWGC 5 cut(s) 225, 1099, 1677, 1793, 2264
Tsp45I GTSAC 7 cut(s) 106, 119, 430, 641, 693, 865, 2242
TspGWI ACGGA 6 cut(s) 86, 94, 107, 378, 1319, 2609
TspMI CCCGGG 1 cut(s) 2058
TspRI CASTG 4 cut(s) 1168, 2032, 2152, 2274
Tth111I GACNNNGTC 1 cut(s) 191
Van91I CCANNNNNTGG 2 cut(s) 1264, 1718
Vha464I CTTAAG 2 cut(s) 1285, 2468
VpaK11BI GGWCC 4 cut(s) 346, 1499, 1708, 2088
VspI ATTAAT 2 cut(s) 1727, 2414
XapI RAATTY 2 cut(s) 1339, 2518
XbaI TCTAGA 1 cut(s) 980
XceI RCATGY 3 cut(s) 876, 1891, 2598
XcmI CCANNNNNNNNNTGG 1 cut(s) 340
XmaI CCCGGG 1 cut(s) 2058
XmiI GTMKAC 2 cut(s) 210, 1733
XmnI GAANNNNTTC 2 cut(s) 380, 1614
XspI CTAG 3 cut(s) 495, 981, 2186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.