FvH4_6g33711

Serine threonine-protein phosphatase 7 long form homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003095
Physical Location & Seq
Forward (+)
26715449 .. 26718971
3523 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33711.t3

Sequence Viewer

Length: 1497 bp
ATGGAGTCACATGTGGATCCTGGACCAATTGACAAGTCTTTACTTTATGATCAAGACAATCACATTAGTTCTGCTATTTGGGATGGACAGGAGCGTGGTGTGCTTAGATGTCATGAACACACTTCAATGCTTGAACACTGGAAACTCACACCTAGGCAAATGGTGTTGGTGGAGAAGGCCGGATTCGGGTACTTCAGAACAATTCCGACAATTATTCTTGACAATTCACTCATCTCGGCCCTTGTTGAAAGGTGGAGGAGAGAAACAAATACATTTCATTTGCCTGTTGGAGAAATGACTATAACACTTGAAGATGTTGCACTTATACTGGGGCTACCAGTTGACGGAAATCCTGTTATAGGCCCTACAGTGAGGACACCCAGCATAGTGTGTCAACAGTTACTGGGGAAAGTACCGAAGGACCTAAATGGGGGAATGTTGAAGCTAAATTGGTTGAGAGAGTTCTTCTCCAAATGTCCTGATGATGCATCAGCTGAAGAGACGGCATGCCATACACGTGCTTACCTCCTATATCTTGTGGGCTGTACAATATTTTCCACAACTACTGGCAATAAAGTCTCTGTTTCTTTTCTCACACTATTTGAGAATTTTGATGAAGCTGGAAGATTTGCATGGGGTGCGGCAGCATTGGCATTCCTCTACAGAGCTCTTGGTAACGCCTCCCTTAAATCTCAAGGCACAATTAGTGGCTCTTTGACACTATTGCAGTGTTGGAGTTATTATCACCTGAATGTTGGCCAACCAAAGTTCAATGAGGAGCCAAACCAGGGTTGTTTTCCATTTGCACTTAGGTGGAAAGGACGATCTAGTGGAACAAGATCGAAAACTAACATTAGTGCCTACCGCAAGGCCCTGGATTCCCTTCAATACTATGATGTAAGATGGTGTCCTTACAAAGATTTGGATTCTACAGTTATACCCGAAGATATAAACAGTAATCTCATTTTACGGACATCAAAAACTATGTTGATATGCTTTGGTAAGGCAGAAAGACACCTCCCAGATCGTTGCCTGAGGCAGTTTGGCATGCTTCAACCTATCCCGGAGCATCCTCAGAAATGGGAGAGGAAGATTCCCGCTTTTGATCAGGGATTAGACTTTTCAAAGGAGATGGAGGTGGAACTGAAAGGGAAAATACGCTCAGAGATTAGGGAATGGTTAGAGCGTGGTTTCTACATTGTGGAAGACGAGGAAGGTGTGGATGAAAGCGAGTACATGGATTGGTATGAGAAAATTACTCGTAAATATGTTGGGAGGCCTGAATCTTTAGAATCTGAGTTTCAAAGAATGGTTGGTGCTATGAGAGAAATAGAAAATATAGCTGATTCTTTGCCAATGGCAGAGATGGGTTCGCAAGATAGGAAGTTGCTTGCTGAAGTTAAGGGCACATTGCAGTCATGCTTTAATGATGTTGTTGGAAATTCAAAAAGGGGTAGGAGTAAGAATGCTGTAAAACGTAAGAGGGAGGGAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

499

Amino Acids

56.69

Weight (kDa)

6.41

Isoelectric Point (pI)

46.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 61 - 417 3e-102 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 641, 865, 1098
AclWI GGATC 2 cut(s) 11, 24
AcoI YGGCCR 1 cut(s) 757
AcsI RAATTY 2 cut(s) 607, 1441
AcuI CTGAAG 3 cut(s) 178, 516, 1416
AcvI CACGTG 1 cut(s) 518
AfaI GTAC 4 cut(s) 191, 414, 547, 1235
AfiI CCNNNNNNNGG 5 cut(s) 186, 344, 359, 430, 788
AflIII ACRYGT 2 cut(s) 10, 515
AjnI CCWGG 3 cut(s) 19, 786, 873
AleI CACNNNNGTG 1 cut(s) 811
AluBI AGCT 5 cut(s) 445, 494, 620, 668, 1343
AluI AGCT 5 cut(s) 445, 494, 620, 668, 1343
Alw21I GWGCWC 1 cut(s) 670
Alw26I GTCTC 2 cut(s) 494, 583
AlwI GGATC 2 cut(s) 11, 24
AlwNI CAGNNNCTG 1 cut(s) 403
AoxI GGCC 6 cut(s) 177, 237, 361, 757, 870, 1277
ApeKI GCWGC 1 cut(s) 644
ApoI RAATTY 2 cut(s) 607, 1441
AspA2I CCTAGG 1 cut(s) 152
AspS9I GGNCC 5 cut(s) 23, 238, 362, 421, 871
AsuC2I CCSGG 1 cut(s) 1064
AsuHPI GGTGA 1 cut(s) 737
AvaII GGWCC 2 cut(s) 23, 421
AvrII CCTAGG 1 cut(s) 152
AxyI CCTNAGG 1 cut(s) 1034
BaeGI GKGCMC 1 cut(s) 1409
BalI TGGCCA 1 cut(s) 759
BamHI GGATCC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 670
BbrPI CACGTG 1 cut(s) 518
BbsI GAAGAC 1 cut(s) 1212
Bbv12I GWGCWC 1 cut(s) 670
BbvI GCAGC 1 cut(s) 656
BccI CCATC 4 cut(s) 77, 897, 1126, 1360
BceAI ACGGC 1 cut(s) 519
BciT130I CCWGG 3 cut(s) 21, 788, 875
BclI TGATCA 2 cut(s) 49, 1105
BcnI CCSGG 1 cut(s) 1064
BcoDI GTCTC 2 cut(s) 494, 583
BfaI CTAG 2 cut(s) 153, 828
BfmI CTRYAG 3 cut(s) 366, 661, 930
BisI GCNGC 2 cut(s) 642, 645
BlnI CCTAGG 1 cut(s) 152
BlsI GCNGC 2 cut(s) 643, 646
Bme1390I CCNGG 4 cut(s) 21, 788, 875, 1064
Bme18I GGWCC 2 cut(s) 23, 421
BmgT120I GGNCC 5 cut(s) 23, 238, 362, 421, 871
BmiI GGNNCC 2 cut(s) 18, 780
BmrFI CCNGG 4 cut(s) 21, 788, 875, 1064
BmrI ACTGGG 2 cut(s) 338, 413
BmsI GCATC 3 cut(s) 475, 497, 1078
BmuI ACTGGG 2 cut(s) 338, 413
BpiI GAAGAC 1 cut(s) 1212
BplI GAGNNNNNCTC 2 cut(s) 452, 484
BpuEI CTTGAG 1 cut(s) 678
BpuMI CCSGG 1 cut(s) 1064
BsaAI YACGTR 1 cut(s) 518
BsaJI CCNNGG 3 cut(s) 152, 787, 873
Bsc4I CCNNNNNNNGG 5 cut(s) 186, 344, 359, 430, 788
Bse1I ACTGG 5 cut(s) 143, 333, 338, 408, 571
Bse21I CCTNAGG 1 cut(s) 1034
Bse3DI GCAATG 1 cut(s) 1409
BseBI CCWGG 3 cut(s) 21, 788, 875
BseDI CCNNGG 3 cut(s) 152, 787, 873
BseGI GGATG 3 cut(s) 88, 1069, 1228
BseLI CCNNNNNNNGG 5 cut(s) 186, 344, 359, 430, 788
BseMI GCAATG 1 cut(s) 1409
BseMII CTCAG 4 cut(s) 1025, 1088, 1176, 1287
BseNI ACTGG 5 cut(s) 143, 333, 338, 408, 571
BseRI GAGGAG 2 cut(s) 271, 791
BseSI GKGCMC 1 cut(s) 1409
BseXI GCAGC 1 cut(s) 656
BseYI CCCAGC 1 cut(s) 380
BshFI GGCC 6 cut(s) 179, 239, 363, 759, 872, 1279
BsiHKAI GWGCWC 1 cut(s) 670
BsiSI CCGG 2 cut(s) 180, 1064
BslI CCNNNNNNNGG 5 cut(s) 186, 344, 359, 430, 788
BsmAI GTCTC 2 cut(s) 494, 583
BsmBI CGTCTC 1 cut(s) 494
BsmI GAATGC 2 cut(s) 653, 1471
BsnI GGCC 6 cut(s) 179, 239, 363, 759, 872, 1279
Bsp1286I GDGCHC 2 cut(s) 670, 1409
Bsp1407I TGTACA 1 cut(s) 545
Bsp143I GATC 6 cut(s) 16, 49, 824, 839, 1024, 1105
BspACI CCGC 3 cut(s) 641, 865, 1098
BspANI GGCC 6 cut(s) 179, 239, 363, 759, 872, 1279
BspCNI CTCAG 4 cut(s) 1026, 1087, 1175, 1288
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 2 cut(s) 18, 780
BspPI GGATC 2 cut(s) 11, 24
BsrDI GCAATG 1 cut(s) 1409
BsrGI TGTACA 1 cut(s) 545
BsrI ACTGG 5 cut(s) 143, 333, 338, 408, 571
BssECI CCNNGG 3 cut(s) 152, 787, 873
BssMI GATC 6 cut(s) 16, 49, 824, 839, 1024, 1105
BssT1I CCWWGG 1 cut(s) 152
Bst2UI CCWGG 3 cut(s) 21, 788, 875
Bst4CI ACNGT 4 cut(s) 370, 399, 934, 956
Bst6I CTCTTC 1 cut(s) 492
BstAPI GCANNNNNTGC 1 cut(s) 638
BstAUI TGTACA 1 cut(s) 545
BstBAI YACGTR 1 cut(s) 518
BstC8I GCNNGC 3 cut(s) 508, 1049, 1392
BstDEI CTNAG 6 cut(s) 104, 809, 1034, 1074, 1162, 1296
BstENI CCTNNNNNAGG 1 cut(s) 357
BstF5I GGATG 3 cut(s) 88, 1069, 1228
BstKTI GATC 6 cut(s) 19, 52, 827, 842, 1027, 1108
BstMAI GTCTC 2 cut(s) 494, 583
BstMBI GATC 6 cut(s) 16, 49, 824, 839, 1024, 1105
BstMWI GCNNNNNNNGC 3 cut(s) 100, 638, 650
BstNI CCWGG 3 cut(s) 21, 788, 875
BstNSI RCATGY 3 cut(s) 14, 510, 1051
BstSCI CCNGG 4 cut(s) 19, 786, 873, 1062
BstSFI CTRYAG 3 cut(s) 366, 661, 930
BstSLI GKGCMC 1 cut(s) 1409
BstV1I GCAGC 1 cut(s) 656
BstV2I GAAGAC 1 cut(s) 1212
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
Bsu36I CCTNAGG 1 cut(s) 1034
BsuRI GGCC 6 cut(s) 179, 239, 363, 759, 872, 1279
BtsCI GGATG 3 cut(s) 88, 1069, 1228
BtsI GCAGTG 1 cut(s) 734
BtsIMutI CAGTG 3 cut(s) 136, 375, 734
Cac8I GCNNGC 3 cut(s) 508, 1049, 1392
CaiI CAGNNNCTG 1 cut(s) 403
CciI TCATGA 1 cut(s) 112
Cfr13I GGNCC 5 cut(s) 23, 238, 362, 421, 871
Csp6I GTAC 4 cut(s) 190, 413, 546, 1234
CviAII CATG 7 cut(s) 11, 113, 507, 633, 1048, 1237, 1419
CviQI GTAC 4 cut(s) 190, 413, 546, 1234
DdeI CTNAG 6 cut(s) 104, 809, 1034, 1074, 1162, 1296
DpnI GATC 6 cut(s) 18, 51, 826, 841, 1026, 1107
DpnII GATC 6 cut(s) 16, 49, 824, 839, 1024, 1105
EaeI YGGCCR 1 cut(s) 757
Eam1104I CTCTTC 1 cut(s) 492
EarI CTCTTC 1 cut(s) 492
Ecl136II GAGCTC 1 cut(s) 668
Eco130I CCWWGG 1 cut(s) 152
Eco147I AGGCCT 1 cut(s) 1279
Eco24I GRGCYC 1 cut(s) 670
Eco47I GGWCC 2 cut(s) 23, 421
Eco53kI GAGCTC 1 cut(s) 668
Eco57I CTGAAG 3 cut(s) 178, 516, 1416
Eco72I CACGTG 1 cut(s) 518
Eco81I CCTNAGG 1 cut(s) 1034
EcoICRI GAGCTC 1 cut(s) 668
EcoNI CCTNNNNNAGG 1 cut(s) 357
EcoO109I RGGNCCY 3 cut(s) 362, 421, 871
EcoRII CCWGG 3 cut(s) 19, 786, 873
EcoT14I CCWWGG 1 cut(s) 152
EcoT22I ATGCAT 1 cut(s) 490
EcoT38I GRGCYC 1 cut(s) 670
ErhI CCWWGG 1 cut(s) 152
Esp3I CGTCTC 1 cut(s) 494
FaeI CATG 7 cut(s) 14, 116, 510, 636, 1051, 1240, 1422
FatI CATG 7 cut(s) 10, 112, 506, 632, 1047, 1236, 1418
FauI CCCGC 1 cut(s) 1105
FbaI TGATCA 2 cut(s) 49, 1105
Fnu4HI GCNGC 2 cut(s) 642, 645
FokI GGATG 3 cut(s) 95, 1056, 1235
FriOI GRGCYC 1 cut(s) 670
Fsp4HI GCNGC 2 cut(s) 642, 645
FspBI CTAG 2 cut(s) 153, 828
GluI GCNGC 2 cut(s) 642, 645
GsaI CCCAGC 1 cut(s) 384
HaeIII GGCC 6 cut(s) 179, 239, 363, 759, 872, 1279
HapII CCGG 2 cut(s) 180, 1064
Hin1II CATG 7 cut(s) 14, 116, 510, 636, 1051, 1240, 1422
HincII GTYRAC 2 cut(s) 343, 395
HindII GTYRAC 2 cut(s) 343, 395
HinfI GANTC 8 cut(s) 5, 183, 878, 926, 1093, 1283, 1292, 1346
HpaII CCGG 2 cut(s) 180, 1064
HphI GGTGA 1 cut(s) 737
Hpy166II GTNNAC 2 cut(s) 343, 395
Hpy188I TCNGA 5 cut(s) 197, 207, 1077, 1165, 1297
Hpy188III TCNNGA 4 cut(s) 53, 113, 218, 479
Hpy8I GTNNAC 2 cut(s) 343, 395
HpyAV CCTTC 4 cut(s) 169, 412, 893, 1208
HpyCH4III ACNGT 4 cut(s) 370, 399, 934, 956
HpyCH4IV ACGT 2 cut(s) 517, 1477
HpyCH4V TGCA 6 cut(s) 320, 488, 632, 727, 806, 1414
HpyF10VI GCNNNNNNNGC 3 cut(s) 100, 638, 650
HpyF3I CTNAG 6 cut(s) 104, 809, 1034, 1074, 1162, 1296
HpySE526I ACGT 2 cut(s) 517, 1477
Hsp92II CATG 7 cut(s) 14, 116, 510, 636, 1051, 1240, 1422
Ksp22I TGATCA 2 cut(s) 49, 1105
Kzo9I GATC 6 cut(s) 16, 49, 824, 839, 1024, 1105
LmnI GCTCC 3 cut(s) 91, 778, 1066
Lsp1109I GCAGC 1 cut(s) 656
LweI GCATC 3 cut(s) 475, 497, 1078
MaeI CTAG 2 cut(s) 153, 828
MaeII ACGT 2 cut(s) 517, 1477
MaeIII GTNAC 3 cut(s) 6, 399, 674
MalI GATC 6 cut(s) 18, 51, 826, 841, 1026, 1107
MboI GATC 6 cut(s) 16, 49, 824, 839, 1024, 1105
MboII GAAGA 7 cut(s) 323, 457, 509, 636, 956, 1102, 1217
MfeI CAATTG 1 cut(s) 27
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 2 cut(s) 670, 1409
MlsI TGGCCA 1 cut(s) 759
MluCI AATT 9 cut(s) 27, 201, 210, 223, 448, 607, 702, 1254, 1441
MluNI TGGCCA 1 cut(s) 759
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 4 cut(s) 230, 268, 713, 1417
Mox20I TGGCCA 1 cut(s) 759
Mph1103I ATGCAT 1 cut(s) 490
MscI TGGCCA 1 cut(s) 759
MseI TTAA 3 cut(s) 687, 1401, 1425
MslI CAYNNNNRTG 4 cut(s) 125, 516, 750, 811
Msp20I TGGCCA 1 cut(s) 759
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 2 cut(s) 180, 1064
MspR9I CCNGG 4 cut(s) 21, 788, 875, 1064
MunI CAATTG 1 cut(s) 27
Mva1269I GAATGC 2 cut(s) 653, 1471
MvaI CCWGG 3 cut(s) 21, 788, 875
MwoI GCNNNNNNNGC 3 cut(s) 100, 638, 650
NciI CCSGG 1 cut(s) 1064
NdeII GATC 6 cut(s) 16, 49, 824, 839, 1024, 1105
NlaIII CATG 7 cut(s) 14, 116, 510, 636, 1051, 1240, 1422
NlaIV GGNNCC 2 cut(s) 18, 780
NmeAIII GCCGAG 1 cut(s) 215
NmuCI GTSAC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 490
NspI RCATGY 3 cut(s) 14, 510, 1051
OliI CACNNNNGTG 1 cut(s) 811
PaeI GCATGC 2 cut(s) 510, 1051
PagI TCATGA 1 cut(s) 112
PceI AGGCCT 1 cut(s) 1279
PciI ACATGT 1 cut(s) 10
PctI GAATGC 2 cut(s) 653, 1471
PfeI GAWTC 7 cut(s) 183, 878, 926, 1093, 1283, 1292, 1346
PfoI TCCNGGA 2 cut(s) 19, 1062
PkrI GCNGC 2 cut(s) 643, 646
PleI GAGTC 1 cut(s) 13
PmaCI CACGTG 1 cut(s) 518
PmlI CACGTG 1 cut(s) 518
PpsI GAGTC 1 cut(s) 13
Ppu21I YACGTR 1 cut(s) 518
PpuMI RGGWCCY 1 cut(s) 421
PscI ACATGT 1 cut(s) 10
Psp124BI GAGCTC 1 cut(s) 670
Psp5II RGGWCCY 1 cut(s) 421
Psp6I CCWGG 3 cut(s) 19, 786, 873
PspCI CACGTG 1 cut(s) 518
PspFI CCCAGC 1 cut(s) 380
PspGI CCWGG 3 cut(s) 19, 786, 873
PspN4I GGNNCC 2 cut(s) 18, 780
PspPI GGNCC 5 cut(s) 23, 238, 362, 421, 871
PspPPI RGGWCCY 1 cut(s) 421
PstNI CAGNNNCTG 1 cut(s) 403
PsuI RGATCY 1 cut(s) 16
PvuII CAGCTG 1 cut(s) 494
RsaI GTAC 4 cut(s) 191, 414, 547, 1235
RsaNI GTAC 4 cut(s) 190, 413, 546, 1234
RseI CAYNNNNRTG 4 cut(s) 125, 516, 750, 811
SacI GAGCTC 1 cut(s) 670
SaqAI TTAA 3 cut(s) 687, 1401, 1425
SatI GCNGC 2 cut(s) 642, 645
Sau3AI GATC 6 cut(s) 16, 49, 824, 839, 1024, 1105
Sau96I GGNCC 5 cut(s) 23, 238, 362, 421, 871
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 4 cut(s) 21, 788, 875, 1064
SduI GDGCHC 2 cut(s) 670, 1409
SfaNI GCATC 3 cut(s) 475, 497, 1078
SfcI CTRYAG 3 cut(s) 366, 661, 930
SinI GGWCC 2 cut(s) 23, 421
SmiMI CAYNNNNRTG 4 cut(s) 125, 516, 750, 811
SmlI CTYRAG 1 cut(s) 693
SmoI CTYRAG 1 cut(s) 693
SphI GCATGC 2 cut(s) 510, 1051
Sse9I AATT 9 cut(s) 27, 201, 210, 223, 448, 607, 702, 1254, 1441
SseBI AGGCCT 1 cut(s) 1279
SsiI CCGC 3 cut(s) 641, 865, 1098
SspI AATATT 1 cut(s) 552
SspMI CTAG 2 cut(s) 153, 828
SstI GAGCTC 1 cut(s) 670
StuI AGGCCT 1 cut(s) 1279
StyD4I CCNGG 4 cut(s) 19, 786, 873, 1062
StyI CCWWGG 1 cut(s) 152
TaaI ACNGT 4 cut(s) 370, 399, 934, 956
TaiI ACGT 2 cut(s) 520, 1480
TaqI TCGA 1 cut(s) 842
TasI AATT 9 cut(s) 27, 201, 210, 223, 448, 607, 702, 1254, 1441
TatI WGTACW 2 cut(s) 545, 1233
TauI GCSGC 1 cut(s) 644
TfiI GAWTC 7 cut(s) 183, 878, 926, 1093, 1283, 1292, 1346
Tru1I TTAA 3 cut(s) 687, 1401, 1425
Tru9I TTAA 3 cut(s) 687, 1401, 1425
TscAI CASTG 3 cut(s) 143, 375, 734
TseFI GTSAC 1 cut(s) 6
TseI GCWGC 1 cut(s) 644
Tsp45I GTSAC 1 cut(s) 6
TspDTI ATGAA 4 cut(s) 129, 266, 630, 1239
TspGWI ACGGA 2 cut(s) 360, 985
TspRI CASTG 3 cut(s) 143, 375, 734
VpaK11BI GGWCC 2 cut(s) 23, 421
XagI CCTNNNNNAGG 1 cut(s) 357
XapI RAATTY 2 cut(s) 607, 1441
XceI RCATGY 3 cut(s) 14, 510, 1051
XmaJI CCTAGG 1 cut(s) 152
XspI CTAG 2 cut(s) 153, 828
Zsp2I ATGCAT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.