Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006803.1

Orthogroup ID

OG0003095

Physical Location & Seq

Genomic Coordinates Forward (+)

213604 .. 215554

Gene Structure 1951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006803.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1542 bp

atggggtcaattatagatcccggaccaattgataagtctgtgctttatgatcaagagaatcatatctcttcaacaatttgggaggggcaggagcgtagtgtgcttagatgtcatgaacacacgtcaatgcttgaacaatggaagctcacacctaaacaaatcgagttagttgagaaggctggttttggatgcttcagaatgattccaacaattagccttgacaatgcacttatctcggcgcttgttgagaggtggaggaaggagacaaatacatttcatttgcctgttggagaaatgactataacacttgaagatgttgcactcatacttgggctaccaattgatggaaaacctgttatgggggtaacaaggccacctggaaaagtgtgtgaaaatttactcggcaaagtaccagaggacctaactggtggaatgttgaagctaacttggttgaaagagagcttttctaaatgtcctgaagatgcaccagtcgaagatattgagcatcatactcgtgcttatctactatatcttgttggttgcactatattttctacaacaactgggaataaagtctctgccatgtatctcccattgtttaagaattttgatgaagctggaaaatttgcatggggtgctgcagctttggcatttctctatagagctcttggaaatgcctcccttaaatcacaaagtaccataagcggttctttgacactcttgcagtgttggagttattatcgcctcaatgttggcaatcctaagttcaatcaggagccaaatgatggtttctttccatttgcgcttcggtggaaaggtagagctactggaccaagatcaaacagtaatattgttacctaccgcaaggccttggattcccttcaactttcagatgttaagtggctcccatacagagatttggattattcaccagaaatggaagattttaaagagagtttgatattacgggcatcagaaactgtgcttatatgctttgacaaggctgagagacaccttccagatcgttgccttaggcagtttggtatgcttcaaccgatacccaaggatgtacagcgatgggagaggaagattcggttttctgatcaggggttagacgtgacaaaggaaacgattttgcagcttaaggggaagaatcaagcagagctgaaggaatggatggatcggcgacttcatatcatcaaagatgaggaaagtgtggatgaaagcatgtacatggagtggtacgagagaattactcggaagtttgtggggaggcctgaatctttagaatctgagtttcagagaatagttactgctatgagagaaattgcagatatagctgattcattgttgaaagatgagatgggtttccaagataggcaatccctcaatgagatcaagaacacagcacttagtagtctgatggatgtggttgaagactcaaagaggagtagacgtaagatagccacaaaacgtaaaagggaagatgatccaagtccaactattagcaaggaggcagcacttgatgtttggatgcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMD

Protein Analysis

513

Amino Acids

58.83

Weight (kDa)

6.1

Isoelectric Point (pI)

48.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25010
fragaria_vesca	FvH4_3g28611 FvH4_6g33711 FvH4_6g33711 FvH4_6g33711
malus_domestica	MD09G1191600.v1.1
prunus_persica	Prupe.3G047800_v2.0.a1 Prupe.4G252400_v2.0.a1
pyrus_communis	pycom09g10810
rosa_chinensis	RchiOBHm_Chr2g0143601 RchiOBHm_Chr5g0052481
rosa_laevigata	RLG00000020050 RLG00000034816
rosa_multiflora	Rmu_sc0002311.1_g000001 Rmu_sc0002412.1_g000002 Rmu_sc0006803.1_g000043
rosa_roxburghii	Rroxscaffold_1G00028360 Rroxscaffold_2G00101610
rosa_rugosa	Rorug02G0384100 Rorug02G0384100 Rorug02G0384200 Rorug02G0384300 Rorug02G0384300 Rorug02G0384400 Rorug02G0384400 Rorug05G0271600 Rorug05G0271700
rosa_samantha	Rh2AG436100 Rh2BG443700 Rh2CG422300 Rh2DG454100 Rh5AG344300 Rh5BG355400 Rh5CG380800 Rh5DG370600
rosa_wichuraiana	Rw2G035540 Rw5G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	344, 785
AccI	GTMKAC	1 cut(s)	1453
AciI	CCGC	2 cut(s)	705, 862
AclWI	GGATC	3 cut(s)	11, 1188, 1484
AcsI	RAATTY	3 cut(s)	394, 604, 623
AcuI	CTGAAG	3 cut(s)	178, 498, 1187
AfaI	GTAC	5 cut(s)	411, 697, 1071, 1232, 1244
AfiI	CCNNNNNNNGG	3 cut(s)	344, 359, 785
AflII	CTTAAG	1 cut(s)	1142
AflIII	ACRYGT	1 cut(s)	120
AjiI	CACGTC	2 cut(s)	123, 1117
AjnI	CCWGG	1 cut(s)	376
Alw21I	GWGCWC	1 cut(s)	667
Alw26I	GTCTC	3 cut(s)	257, 580, 1003
AlwI	GGATC	3 cut(s)	11, 1188, 1484
AlwNI	CAGNNNCTG	1 cut(s)	980
AoxI	GGCC	3 cut(s)	371, 867, 1274
ApeKI	GCWGC	4 cut(s)	638, 641, 1138, 1517
ApoI	RAATTY	3 cut(s)	394, 604, 623
AspLEI	GCGC	2 cut(s)	241, 805
AspS9I	GGNCC	3 cut(s)	23, 418, 830
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	1 cut(s)	921
AvaII	GGWCC	3 cut(s)	23, 418, 830
AxyI	CCTNAGG	1 cut(s)	1031
BanII	GRGCYC	1 cut(s)	667
BauI	CACGAG	1 cut(s)	513
BbsI	GAAGAC	1 cut(s)	1443
Bbv12I	GWGCWC	1 cut(s)	667
BbvI	GCAGC	4 cut(s)	625, 653, 1150, 1529
BccI	CCATC	6 cut(s)	338, 779, 1071, 1171, 1357, 1417
BcgI	CGANNNNNNTGC	4 cut(s)	216, 250, 494, 528
BciT130I	CCWGG	1 cut(s)	378
BclI	TGATCA	2 cut(s)	49, 1102
BcnI	CCSGG	1 cut(s)	21
BcoDI	GTCTC	3 cut(s)	257, 580, 1003
BfmI	CTRYAG	2 cut(s)	639, 658
BfoI	RGCGCY	1 cut(s)	242
BfrI	CTTAAG	1 cut(s)	1142
BisI	GCNGC	4 cut(s)	639, 642, 1139, 1518
BlsI	GCNGC	4 cut(s)	640, 643, 1140, 1519
Bme1390I	CCNGG	2 cut(s)	21, 378
Bme18I	GGWCC	3 cut(s)	23, 418, 830
BmgBI	CACGTC	2 cut(s)	123, 1117
BmgT120I	GGNCC	3 cut(s)	23, 418, 830
BmiI	GGNNCC	2 cut(s)	777, 905
BmrFI	CCNGG	2 cut(s)	21, 378
BmrI	ACTGGG	1 cut(s)	573
BmsI	GCATC	5 cut(s)	179, 472, 514, 980, 1524
BmuI	ACTGGG	1 cut(s)	573
BpiI	GAAGAC	1 cut(s)	1443
BplI	GAGNNNNNCTC	2 cut(s)	1240, 1272
BpuMI	CCSGG	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	870, 1062
BsaXI	ACNNNNNCTCC	2 cut(s)	1441, 1471
Bsc4I	CCNNNNNNNGG	3 cut(s)	344, 359, 785
Bse1I	ACTGG	4 cut(s)	430, 488, 568, 832
Bse21I	CCTNAGG	1 cut(s)	1031
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	870, 1062
BseGI	GGATG	6 cut(s)	194, 1072, 1182, 1225, 1432, 1539
BseLI	CCNNNNNNNGG	3 cut(s)	344, 359, 785
BseMII	CTCAG	2 cut(s)	996, 1284
BseNI	ACTGG	4 cut(s)	430, 488, 568, 832
BseRI	GAGGAG	1 cut(s)	1462
BseXI	GCAGC	4 cut(s)	625, 653, 1150, 1529
BshFI	GGCC	3 cut(s)	373, 869, 1276
BsiHKAI	GWGCWC	1 cut(s)	667
BsiSI	CCGG	1 cut(s)	21
BslI	CCNNNNNNNGG	3 cut(s)	344, 359, 785
BsmAI	GTCTC	3 cut(s)	257, 580, 1003
BsnI	GGCC	3 cut(s)	373, 869, 1276
Bsp1286I	GDGCHC	1 cut(s)	667
Bsp1407I	TGTACA	2 cut(s)	1069, 1230
Bsp143I	GATC	8 cut(s)	16, 49, 836, 1021, 1102, 1180, 1395, 1489
BspACI	CCGC	2 cut(s)	705, 862
BspANI	GGCC	3 cut(s)	373, 869, 1276
BspCNI	CTCAG	2 cut(s)	997, 1285
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	2 cut(s)	777, 905
BspMAI	CTGCAG	1 cut(s)	643
BspPI	GGATC	3 cut(s)	11, 1188, 1484
BspTI	CTTAAG	1 cut(s)	1142
BsrGI	TGTACA	2 cut(s)	1069, 1230
BsrI	ACTGG	4 cut(s)	430, 488, 568, 832
BssECI	CCNNGG	2 cut(s)	870, 1062
BssMI	GATC	8 cut(s)	16, 49, 836, 1021, 1102, 1180, 1395, 1489
BssSI	CACGAG	1 cut(s)	513
BssT1I	CCWWGG	2 cut(s)	870, 1062
Bst2BI	CACGAG	1 cut(s)	513
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	2 cut(s)	845, 982
Bst6I	CTCTTC	1 cut(s)	73
BstAFI	CTTAAG	1 cut(s)	1142
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstAUI	TGTACA	2 cut(s)	1069, 1230
BstDEI	CTNAG	6 cut(s)	104, 762, 1005, 1031, 1293, 1412
BstF5I	GGATG	6 cut(s)	194, 1072, 1182, 1225, 1432, 1539
BstH2I	RGCGCY	1 cut(s)	242
BstHHI	GCGC	2 cut(s)	241, 805
BstKTI	GATC	8 cut(s)	19, 52, 839, 1024, 1105, 1183, 1398, 1492
BstMAI	GTCTC	3 cut(s)	257, 580, 1003
BstMBI	GATC	8 cut(s)	16, 49, 836, 1021, 1102, 1180, 1395, 1489
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 635, 647, 1337
BstNI	CCWGG	1 cut(s)	378
BstNSI	RCATGY	1 cut(s)	1231
BstSCI	CCNGG	2 cut(s)	19, 376
BstSFI	CTRYAG	2 cut(s)	639, 658
BstV1I	GCAGC	4 cut(s)	625, 653, 1150, 1529
BstV2I	GAAGAC	1 cut(s)	1443
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
Bsu36I	CCTNAGG	1 cut(s)	1031
BsuRI	GGCC	3 cut(s)	373, 869, 1276
BtgZI	GCGATG	1 cut(s)	1090
BtrI	CACGTC	2 cut(s)	123, 1117
BtsCI	GGATG	6 cut(s)	194, 1072, 1182, 1225, 1432, 1539
BtsI	GCAGTG	1 cut(s)	731
BtsIMutI	CAGTG	2 cut(s)	731, 1537
CaiI	CAGNNNCTG	1 cut(s)	980
CciI	TCATGA	1 cut(s)	112
CfoI	GCGC	2 cut(s)	241, 805
Cfr13I	GGNCC	3 cut(s)	23, 418, 830
Csp6I	GTAC	5 cut(s)	410, 696, 1070, 1231, 1243
CviAII	CATG	5 cut(s)	113, 583, 630, 1228, 1234
CviQI	GTAC	5 cut(s)	410, 696, 1070, 1231, 1243
DdeI	CTNAG	6 cut(s)	104, 762, 1005, 1031, 1293, 1412
DpnI	GATC	8 cut(s)	18, 51, 838, 1023, 1104, 1182, 1397, 1491
DpnII	GATC	8 cut(s)	16, 49, 836, 1021, 1102, 1180, 1395, 1489
DraI	TTTAAA	1 cut(s)	949
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Ecl136II	GAGCTC	1 cut(s)	665
Eco130I	CCWWGG	2 cut(s)	870, 1062
Eco147I	AGGCCT	2 cut(s)	869, 1276
Eco24I	GRGCYC	1 cut(s)	667
Eco47I	GGWCC	3 cut(s)	23, 418, 830
Eco53kI	GAGCTC	1 cut(s)	665
Eco57I	CTGAAG	3 cut(s)	178, 498, 1187
Eco81I	CCTNAGG	1 cut(s)	1031
EcoICRI	GAGCTC	1 cut(s)	665
EcoO109I	RGGNCCY	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	376
EcoT14I	CCWWGG	2 cut(s)	870, 1062
EcoT38I	GRGCYC	1 cut(s)	667
ErhI	CCWWGG	2 cut(s)	870, 1062
FaeI	CATG	5 cut(s)	116, 586, 633, 1231, 1237
FalI	AAGNNNNNCTT	2 cut(s)	694, 726
FatI	CATG	5 cut(s)	112, 582, 629, 1227, 1233
FbaI	TGATCA	2 cut(s)	49, 1102
FblI	GTMKAC	1 cut(s)	1453
Fnu4HI	GCNGC	4 cut(s)	639, 642, 1139, 1518
FokI	GGATG	5 cut(s)	201, 1079, 1189, 1232, 1439
FriOI	GRGCYC	1 cut(s)	667
Fsp4HI	GCNGC	4 cut(s)	639, 642, 1139, 1518
GlaI	GCGC	2 cut(s)	240, 804
GluI	GCNGC	4 cut(s)	639, 642, 1139, 1518
HaeII	RGCGCY	1 cut(s)	242
HaeIII	GGCC	3 cut(s)	373, 869, 1276
HapII	CCGG	1 cut(s)	21
HhaI	GCGC	2 cut(s)	241, 805
Hin1II	CATG	5 cut(s)	116, 586, 633, 1231, 1237
Hin6I	GCGC	2 cut(s)	239, 803
HinP1I	GCGC	2 cut(s)	239, 803
HinfI	GANTC	9 cut(s)	58, 202, 875, 1090, 1153, 1280, 1289, 1343, 1439
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	1 cut(s)	921
Hpy166II	GTNNAC	1 cut(s)	1454
Hpy188I	TCNGA	8 cut(s)	197, 892, 976, 1102, 1260, 1294, 1302, 1422
Hpy188III	TCNNGA	6 cut(s)	53, 113, 476, 773, 1019, 1399
Hpy8I	GTNNAC	1 cut(s)	1454
HpyAV	CCTTC	5 cut(s)	169, 253, 890, 1025, 1162
HpyCH4III	ACNGT	2 cut(s)	845, 982
HpyCH4IV	ACGT	4 cut(s)	122, 1116, 1456, 1474
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 635, 647, 1337
HpyF3I	CTNAG	6 cut(s)	104, 762, 1005, 1031, 1293, 1412
HpySE526I	ACGT	4 cut(s)	122, 1116, 1456, 1474
Hsp92II	CATG	5 cut(s)	116, 586, 633, 1231, 1237
HspAI	GCGC	2 cut(s)	239, 803
Ksp22I	TGATCA	2 cut(s)	49, 1102
Kzo9I	GATC	8 cut(s)	16, 49, 836, 1021, 1102, 1180, 1395, 1489
LmnI	GCTCC	3 cut(s)	91, 775, 909
Lsp1109I	GCAGC	4 cut(s)	625, 653, 1150, 1529
LweI	GCATC	5 cut(s)	179, 472, 514, 980, 1524
MaeII	ACGT	4 cut(s)	122, 1116, 1456, 1474
MaeIII	GTNAC	4 cut(s)	364, 853, 1117, 1309
MalI	GATC	8 cut(s)	18, 51, 838, 1023, 1104, 1182, 1397, 1491
MboI	GATC	8 cut(s)	16, 49, 836, 1021, 1102, 1180, 1395, 1489
MboII	GAAGA	9 cut(s)	60, 323, 491, 506, 953, 1099, 1162, 1448, 1496
MfeI	CAATTG	2 cut(s)	27, 339
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	667
MlyI	GAGTC	1 cut(s)	1433
MmeI	TCCRAC	4 cut(s)	230, 268, 710, 1523
MseI	TTAA	5 cut(s)	600, 684, 897, 948, 1143
MslI	CAYNNNNRTG	3 cut(s)	125, 513, 1232
MspCI	CTTAAG	1 cut(s)	1142
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	2 cut(s)	21, 378
MunI	CAATTG	2 cut(s)	27, 339
MvaI	CCWGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	4 cut(s)	100, 635, 647, 1337
NciI	CCSGG	1 cut(s)	21
NdeII	GATC	8 cut(s)	16, 49, 836, 1021, 1102, 1180, 1395, 1489
NlaIII	CATG	5 cut(s)	116, 586, 633, 1231, 1237
NlaIV	GGNNCC	2 cut(s)	777, 905
NmeAIII	GCCGAG	2 cut(s)	215, 381
NmuCI	GTSAC	1 cut(s)	1117
NspI	RCATGY	1 cut(s)	1231
PagI	TCATGA	1 cut(s)	112
PceI	AGGCCT	2 cut(s)	869, 1276
PfeI	GAWTC	8 cut(s)	58, 202, 875, 1090, 1153, 1280, 1289, 1343
PflMI	CCANNNNNTGG	2 cut(s)	344, 785
PfoI	TCCNGGA	1 cut(s)	19
PkrI	GCNGC	4 cut(s)	640, 643, 1140, 1519
PleI	GAGTC	1 cut(s)	1433
PpsI	GAGTC	1 cut(s)	1433
PpuMI	RGGWCCY	1 cut(s)	418
Psp124BI	GAGCTC	1 cut(s)	667
Psp5II	RGGWCCY	1 cut(s)	418
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	2 cut(s)	777, 905
PspPI	GGNCC	3 cut(s)	23, 418, 830
PspPPI	RGGWCCY	1 cut(s)	418
PstI	CTGCAG	1 cut(s)	643
PstNI	CAGNNNCTG	1 cut(s)	980
PsuI	RGATCY	1 cut(s)	16
RsaI	GTAC	5 cut(s)	411, 697, 1071, 1232, 1244
RsaNI	GTAC	5 cut(s)	410, 696, 1070, 1231, 1243
RseI	CAYNNNNRTG	3 cut(s)	125, 513, 1232
SacI	GAGCTC	1 cut(s)	667
SaqAI	TTAA	5 cut(s)	600, 684, 897, 948, 1143
SatI	GCNGC	4 cut(s)	639, 642, 1139, 1518
Sau3AI	GATC	8 cut(s)	16, 49, 836, 1021, 1102, 1180, 1395, 1489
Sau96I	GGNCC	3 cut(s)	23, 418, 830
SchI	GAGTC	1 cut(s)	1433
ScrFI	CCNGG	2 cut(s)	21, 378
SduI	GDGCHC	1 cut(s)	667
SfaNI	GCATC	5 cut(s)	179, 472, 514, 980, 1524
SfcI	CTRYAG	2 cut(s)	639, 658
SinI	GGWCC	3 cut(s)	23, 418, 830
SmiMI	CAYNNNNRTG	3 cut(s)	125, 513, 1232
SmlI	CTYRAG	1 cut(s)	1142
SmoI	CTYRAG	1 cut(s)	1142
SseBI	AGGCCT	2 cut(s)	869, 1276
SsiI	CCGC	2 cut(s)	705, 862
SspI	AATATT	1 cut(s)	850
SstI	GAGCTC	1 cut(s)	667
StuI	AGGCCT	2 cut(s)	869, 1276
StyD4I	CCNGG	2 cut(s)	19, 376
StyI	CCWWGG	2 cut(s)	870, 1062
TaaI	ACNGT	2 cut(s)	845, 982
TaiI	ACGT	4 cut(s)	125, 1119, 1459, 1477
TaqI	TCGA	2 cut(s)	162, 492
TatI	WGTACW	2 cut(s)	1069, 1230
TfiI	GAWTC	8 cut(s)	58, 202, 875, 1090, 1153, 1280, 1289, 1343
Tru1I	TTAA	5 cut(s)	600, 684, 897, 948, 1143
Tru9I	TTAA	5 cut(s)	600, 684, 897, 948, 1143
TscAI	CASTG	1 cut(s)	731
TseFI	GTSAC	1 cut(s)	1117
TseI	GCWGC	4 cut(s)	638, 641, 1138, 1517
Tsp45I	GTSAC	1 cut(s)	1117
TspDTI	ATGAA	6 cut(s)	129, 266, 627, 1181, 1236, 1335
TspRI	CASTG	1 cut(s)	731
Van91I	CCANNNNNTGG	2 cut(s)	344, 785
Vha464I	CTTAAG	1 cut(s)	1142
VpaK11BI	GGWCC	3 cut(s)	23, 418, 830
XapI	RAATTY	3 cut(s)	394, 604, 623
XceI	RCATGY	1 cut(s)	1231
XmiI	GTMKAC	1 cut(s)	1453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.