FvH4_3g28611

Serine threonine-protein phosphatase 7 long form homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003095
Physical Location & Seq
Forward (+)
21615475 .. 21618778
3304 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g28611.t1

Sequence Viewer

Length: 1542 bp
ATGGGGTCGAGTGGAGATCCGGGTCCAGTTGATAAGTCTGTGCTTTATGATCAAGAGAACCATATTTCTTCAGCAATTTGGGAGGGGCAGGAGCGTAATGTGCTTAGATGTCACGAGCACACGTCAATGCTTGAACAATGGAGGCTTACACCTAAACAAATTGAGTTGGTTGAGAAGGCTGGTTTTGGATACTTCACAATGATTCCAACAATTAGCCTTGACAATGCACTTATCTCCGCGCTTGTTGAAAGGTGGAGGAAGGAGACGAACACATTTCATTTGCCTGTTGGAGAAATGACCATAACACTTGAAGATGTTGCGCTCATACTTGGGCTACCGATTGATGGTAAACCTGTTATGGGGGTAACTAGGCCAGCTGGGAAAATGTATGAAAATTTACTTGGGAAAGTACCAGAAGACCTAACTGGTGGAATGTTGAAGCTAACTTGGTTGAAAGAGAGATTTTCTAAATGTCCTGAAGATGCACCGATTGAAGAGATTGAGCGTCATACACGTGCTTATCTACTATATCTTGTTGGCTGTACTATATTCTCTACAACAACTGGGAATAAAGTCTCTGCCATGTATCTCCCATTGTTTAAGAATTTTGATGAAGCTGGAAAATTTGCATGGGGTGCTGCAGCATTGGCATTTCTCTATAGAGCTCTTGGTAATGCCTCCCTTAAATCACAAAGTACCATAAGTGGTTCTTTGACACTCTTGCAGTGTTGGAGTTATTATCGCCTCAATGTCGGTAATCCAAAGTTTAATCAGGAGCCAAATGATGGTTTCTTTCCTCTCGCACTTCGGTGGAAAGGTAGAGCTACTGGACCAAGATCAAACAGTAATATTGTTACCTACCGCAAGGCCTTGGATTCTCTTCAACCTTCAAATGTTAAGTGGCTCCCATACAAAGATTTGAATTATTCACCCGAACTGGAAGATATTAAGGAGAGTTTGATATTGCGGGCATCAGAGACCGTGCTTATATGCTTTGATAAGGCTGAAAGACACCTTCCTGATCGTTGCCTTAGGCAGTTTGGCATGTTTCAACCGATACCGAAAGATGTACAGCGATGGGAGAGAAAGATTCGATTTTCTGATCAGGGGTTAGATGAGACAAAGGAAACAATTTTGCAGCTCAAAGGGAAGAATCAAGCAGAACTGAAGGAATGGATAGACCGTCGACGTCGTATCATCCCATATGAGAAAATTGTGGATGAAAGTATGTACATGGAGTGGTACGACAGAATTACCCGGAAGTTTGTGGGCAGGCCAGAATCTTTAGAATCTGAGTTTCAGAGAATAGTTACTGCTATGAGAGAAATTGCAGATATAGCAGATTCATTATCGAATGATGAGATAGGTTTCCGAGACAGGCAATCCCTTGATGAGATCAAGAACACTGCACTCAGTAGCCTGATGGATGTGGTTGAAGGCTCAAAAAGGAGTAGACGTAAGATAGCCACAAAACGTAAAAGGGAAGATGATCCAAGTCCAACTACTGGCAAGGACGTAGCACTTGATGTTTGGATGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

514

Amino Acids

58.86

Weight (kDa)

7.57

Isoelectric Point (pI)

49.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 61 - 415 4.9e-102 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1192
AccB7I CCANNNNNTGG 2 cut(s) 785, 1505
AccI GTMKAC 2 cut(s) 1186, 1453
AccII CGCG 1 cut(s) 239
AciI CCGC 3 cut(s) 237, 862, 967
AclWI GGATC 2 cut(s) 11, 1484
AcsI RAATTY 3 cut(s) 394, 604, 623
AcuI CTGAAG 3 cut(s) 54, 498, 1187
AcvI CACGTG 1 cut(s) 515
AcyI GRCGYC 1 cut(s) 1189
AfaI GTAC 7 cut(s) 411, 544, 697, 1071, 1232, 1244, 1538
AfiI CCNNNNNNNGG 4 cut(s) 344, 359, 785, 1505
AflIII ACRYGT 2 cut(s) 120, 512
AjiI CACGTC 1 cut(s) 123
AjuI GAANNNNNNNTTGG 2 cut(s) 384, 416
AleI CACNNNNGTG 1 cut(s) 808
AluBI AGCT 6 cut(s) 377, 442, 617, 665, 824, 1141
AluI AGCT 6 cut(s) 377, 442, 617, 665, 824, 1141
Alw21I GWGCWC 2 cut(s) 120, 667
Alw26I GTCTC 5 cut(s) 257, 580, 971, 1112, 1368
AlwI GGATC 2 cut(s) 11, 1484
AoxI GGCC 3 cut(s) 371, 867, 1274
ApeKI GCWGC 3 cut(s) 638, 641, 1138
ApoI RAATTY 3 cut(s) 394, 604, 623
AspLEI GCGC 2 cut(s) 241, 322
AspS9I GGNCC 2 cut(s) 23, 830
AsuC2I CCSGG 2 cut(s) 21, 1258
AsuHPI GGTGA 1 cut(s) 921
AvaII GGWCC 2 cut(s) 23, 830
AxyI CCTNAGG 1 cut(s) 1031
BanII GRGCYC 1 cut(s) 667
BauI CACGAG 1 cut(s) 113
BbrPI CACGTG 1 cut(s) 515
BbsI GAAGAC 1 cut(s) 423
Bbv12I GWGCWC 2 cut(s) 120, 667
BbvI GCAGC 3 cut(s) 625, 653, 1150
BccI CCATC 4 cut(s) 338, 779, 1071, 1417
BciVI GTATCC 1 cut(s) 182
BclI TGATCA 2 cut(s) 49, 1102
BcnI CCSGG 2 cut(s) 21, 1258
BcoDI GTCTC 5 cut(s) 257, 580, 971, 1112, 1368
BfaI CTAG 1 cut(s) 369
BfmI CTRYAG 2 cut(s) 639, 658
BfuI GTATCC 1 cut(s) 182
BisI GCNGC 3 cut(s) 639, 642, 1139
BlsI GCNGC 3 cut(s) 640, 643, 1140
Bme1390I CCNGG 2 cut(s) 21, 1258
Bme18I GGWCC 2 cut(s) 23, 830
BmgBI CACGTC 1 cut(s) 123
BmgT120I GGNCC 2 cut(s) 23, 830
BmiI GGNNCC 3 cut(s) 24, 777, 905
BmrFI CCNGG 2 cut(s) 21, 1258
BmrI ACTGGG 1 cut(s) 573
BmsI GCATC 2 cut(s) 472, 980
BmuI ACTGGG 1 cut(s) 573
BpiI GAAGAC 1 cut(s) 423
BpuMI CCSGG 2 cut(s) 21, 1258
BsaAI YACGTR 1 cut(s) 515
BsaHI GRCGYC 1 cut(s) 1189
BsaI GGTCTC 1 cut(s) 971
BsaJI CCNNGG 1 cut(s) 870
BsaXI ACNNNNNCTCC 2 cut(s) 1441, 1471
Bsc4I CCNNNNNNNGG 4 cut(s) 344, 359, 785, 1505
Bse1I ACTGG 6 cut(s) 26, 430, 568, 832, 942, 1510
Bse21I CCTNAGG 1 cut(s) 1031
BseDI CCNNGG 1 cut(s) 870
BseGI GGATG 4 cut(s) 1197, 1225, 1432, 1539
BseLI CCNNNNNNNGG 4 cut(s) 344, 359, 785, 1505
BseMII CTCAG 2 cut(s) 1284, 1426
BseNI ACTGG 6 cut(s) 26, 430, 568, 832, 942, 1510
BseXI GCAGC 3 cut(s) 625, 653, 1150
BseYI CCCAGC 1 cut(s) 377
BsgI GTGCAG 1 cut(s) 1392
Bsh1236I CGCG 1 cut(s) 239
BshFI GGCC 3 cut(s) 373, 869, 1276
BsiHKAI GWGCWC 2 cut(s) 120, 667
BsiSI CCGG 2 cut(s) 20, 1258
BslI CCNNNNNNNGG 4 cut(s) 344, 359, 785, 1505
BsmAI GTCTC 5 cut(s) 257, 580, 971, 1112, 1368
BsmBI CGTCTC 1 cut(s) 257
BsnI GGCC 3 cut(s) 373, 869, 1276
Bso31I GGTCTC 1 cut(s) 971
Bsp1286I GDGCHC 2 cut(s) 120, 667
Bsp1407I TGTACA 2 cut(s) 1069, 1230
Bsp143I GATC 7 cut(s) 16, 49, 836, 1021, 1102, 1395, 1489
BspACI CCGC 3 cut(s) 237, 862, 967
BspANI GGCC 3 cut(s) 373, 869, 1276
BspCNI CTCAG 2 cut(s) 1285, 1425
BspFNI CGCG 1 cut(s) 239
BspLI GGNNCC 3 cut(s) 24, 777, 905
BspMAI CTGCAG 1 cut(s) 643
BspPI GGATC 2 cut(s) 11, 1484
BspTNI GGTCTC 1 cut(s) 971
BsrGI TGTACA 2 cut(s) 1069, 1230
BsrI ACTGG 6 cut(s) 26, 430, 568, 832, 942, 1510
BssECI CCNNGG 1 cut(s) 870
BssMI GATC 7 cut(s) 16, 49, 836, 1021, 1102, 1395, 1489
BssNI GRCGYC 1 cut(s) 1189
BssSI CACGAG 1 cut(s) 113
BssT1I CCWWGG 1 cut(s) 870
Bst2BI CACGAG 1 cut(s) 113
Bst4CI ACNGT 3 cut(s) 845, 982, 1184
Bst6I CTCTTC 2 cut(s) 489, 885
BstACI GRCGYC 1 cut(s) 1189
BstAPI GCANNNNNTGC 1 cut(s) 635
BstAUI TGTACA 2 cut(s) 1069, 1230
BstBAI YACGTR 1 cut(s) 515
BstC8I GCNNGC 3 cut(s) 375, 969, 1274
BstDEI CTNAG 4 cut(s) 104, 1031, 1293, 1412
BstF5I GGATG 4 cut(s) 1197, 1225, 1432, 1539
BstFNI CGCG 1 cut(s) 239
BstHHI GCGC 2 cut(s) 241, 322
BstKTI GATC 7 cut(s) 19, 52, 839, 1024, 1105, 1398, 1492
BstMAI GTCTC 5 cut(s) 257, 580, 971, 1112, 1368
BstMBI GATC 7 cut(s) 16, 49, 836, 1021, 1102, 1395, 1489
BstMWI GCNNNNNNNGC 4 cut(s) 100, 635, 647, 1337
BstNSI RCATGY 1 cut(s) 1048
BstSCI CCNGG 2 cut(s) 19, 1256
BstSFI CTRYAG 2 cut(s) 639, 658
BstUI CGCG 1 cut(s) 239
BstV1I GCAGC 3 cut(s) 625, 653, 1150
BstV2I GAAGAC 1 cut(s) 423
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
Bsu36I CCTNAGG 1 cut(s) 1031
BsuI GTATCC 1 cut(s) 182
BsuRI GGCC 3 cut(s) 373, 869, 1276
BtgZI GCGATG 1 cut(s) 1090
BtrI CACGTC 1 cut(s) 123
BtsCI GGATG 4 cut(s) 1197, 1225, 1432, 1539
BtsI GCAGTG 2 cut(s) 731, 1404
BtsIMutI CAGTG 2 cut(s) 731, 1404
Cac8I GCNNGC 3 cut(s) 375, 969, 1274
CfoI GCGC 2 cut(s) 241, 322
Cfr13I GGNCC 2 cut(s) 23, 830
CseI GACGC 1 cut(s) 494
Csp6I GTAC 7 cut(s) 410, 543, 696, 1070, 1231, 1243, 1537
CviAII CATG 4 cut(s) 583, 630, 1045, 1234
CviQI GTAC 7 cut(s) 410, 543, 696, 1070, 1231, 1243, 1537
DdeI CTNAG 4 cut(s) 104, 1031, 1293, 1412
DpnI GATC 7 cut(s) 18, 51, 838, 1023, 1104, 1397, 1491
DpnII GATC 7 cut(s) 16, 49, 836, 1021, 1102, 1395, 1489
Eam1104I CTCTTC 2 cut(s) 489, 885
EarI CTCTTC 2 cut(s) 489, 885
Ecl136II GAGCTC 1 cut(s) 665
Eco130I CCWWGG 1 cut(s) 870
Eco147I AGGCCT 1 cut(s) 869
Eco24I GRGCYC 1 cut(s) 667
Eco31I GGTCTC 1 cut(s) 971
Eco47I GGWCC 2 cut(s) 23, 830
Eco53kI GAGCTC 1 cut(s) 665
Eco57I CTGAAG 3 cut(s) 54, 498, 1187
Eco72I CACGTG 1 cut(s) 515
Eco81I CCTNAGG 1 cut(s) 1031
EcoICRI GAGCTC 1 cut(s) 665
EcoT14I CCWWGG 1 cut(s) 870
EcoT38I GRGCYC 1 cut(s) 667
ErhI CCWWGG 1 cut(s) 870
Esp3I CGTCTC 1 cut(s) 257
FaeI CATG 4 cut(s) 586, 633, 1048, 1237
FalI AAGNNNNNCTT 2 cut(s) 694, 726
FatI CATG 4 cut(s) 582, 629, 1044, 1233
FauI CCCGC 1 cut(s) 960
FauNDI CATATG 1 cut(s) 1204
FbaI TGATCA 2 cut(s) 49, 1102
FblI GTMKAC 2 cut(s) 1186, 1453
Fnu4HI GCNGC 3 cut(s) 639, 642, 1139
FokI GGATG 3 cut(s) 1184, 1232, 1439
FriOI GRGCYC 1 cut(s) 667
Fsp4HI GCNGC 3 cut(s) 639, 642, 1139
FspBI CTAG 1 cut(s) 369
GlaI GCGC 2 cut(s) 240, 321
GluI GCNGC 3 cut(s) 639, 642, 1139
GsaI CCCAGC 1 cut(s) 381
HaeIII GGCC 3 cut(s) 373, 869, 1276
HapII CCGG 2 cut(s) 20, 1258
HgaI GACGC 1 cut(s) 494
HhaI GCGC 2 cut(s) 241, 322
Hin1I GRCGYC 1 cut(s) 1189
Hin1II CATG 4 cut(s) 586, 633, 1048, 1237
Hin6I GCGC 2 cut(s) 239, 320
HinP1I GCGC 2 cut(s) 239, 320
HincII GTYRAC 1 cut(s) 1187
HindII GTYRAC 1 cut(s) 1187
HinfI GANTC 7 cut(s) 202, 875, 1090, 1153, 1280, 1289, 1343
HpaII CCGG 2 cut(s) 20, 1258
HphI GGTGA 1 cut(s) 921
Hpy166II GTNNAC 3 cut(s) 350, 1187, 1454
Hpy188I TCNGA 5 cut(s) 976, 1102, 1294, 1302, 1373
Hpy188III TCNNGA 6 cut(s) 53, 113, 476, 773, 1019, 1399
Hpy8I GTNNAC 3 cut(s) 350, 1187, 1454
Hpy99I CGWCG 3 cut(s) 1188, 1191, 1194
HpyAV CCTTC 6 cut(s) 169, 253, 897, 1025, 1162, 1430
HpyCH4III ACNGT 3 cut(s) 845, 982, 1184
HpyCH4IV ACGT 6 cut(s) 122, 514, 1189, 1456, 1474, 1515
HpyCH4V TGCA 8 cut(s) 227, 485, 629, 641, 724, 1138, 1331, 1409
HpyF10VI GCNNNNNNNGC 4 cut(s) 100, 635, 647, 1337
HpyF3I CTNAG 4 cut(s) 104, 1031, 1293, 1412
HpySE526I ACGT 6 cut(s) 122, 514, 1189, 1456, 1474, 1515
Hsp92I GRCGYC 1 cut(s) 1189
Hsp92II CATG 4 cut(s) 586, 633, 1048, 1237
HspAI GCGC 2 cut(s) 239, 320
Ksp22I TGATCA 2 cut(s) 49, 1102
Kzo9I GATC 7 cut(s) 16, 49, 836, 1021, 1102, 1395, 1489
LmnI GCTCC 3 cut(s) 91, 775, 909
Lsp1109I GCAGC 3 cut(s) 625, 653, 1150
LweI GCATC 2 cut(s) 472, 980
MaeI CTAG 1 cut(s) 369
MaeII ACGT 6 cut(s) 122, 514, 1189, 1456, 1474, 1515
MaeIII GTNAC 4 cut(s) 110, 364, 853, 1309
MalI GATC 7 cut(s) 18, 51, 838, 1023, 1104, 1397, 1491
MboI GATC 7 cut(s) 16, 49, 836, 1021, 1102, 1395, 1489
MboII GAAGA 9 cut(s) 60, 323, 428, 491, 506, 872, 953, 1162, 1496
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 2 cut(s) 120, 667
MmeI TCCRAC 4 cut(s) 230, 268, 710, 1523
MnlI CCTC 6 cut(s) 76, 135, 249, 688, 755, 807
MseI TTAA 5 cut(s) 600, 684, 768, 897, 948
MslI CAYNNNNRTG 3 cut(s) 125, 513, 808
MspA1I CMGCKG 1 cut(s) 377
MspI CCGG 2 cut(s) 20, 1258
MspR9I CCNGG 2 cut(s) 21, 1258
MvnI CGCG 1 cut(s) 239
MwoI GCNNNNNNNGC 4 cut(s) 100, 635, 647, 1337
NciI CCSGG 2 cut(s) 21, 1258
NdeI CATATG 1 cut(s) 1204
NdeII GATC 7 cut(s) 16, 49, 836, 1021, 1102, 1395, 1489
NlaIII CATG 4 cut(s) 586, 633, 1048, 1237
NlaIV GGNNCC 3 cut(s) 24, 777, 905
NmuCI GTSAC 1 cut(s) 110
NspI RCATGY 1 cut(s) 1048
OliI CACNNNNGTG 1 cut(s) 808
PceI AGGCCT 1 cut(s) 869
PfeI GAWTC 7 cut(s) 202, 875, 1090, 1153, 1280, 1289, 1343
PflMI CCANNNNNTGG 2 cut(s) 785, 1505
PkrI GCNGC 3 cut(s) 640, 643, 1140
PmaCI CACGTG 1 cut(s) 515
PmlI CACGTG 1 cut(s) 515
Ppu21I YACGTR 1 cut(s) 515
Psp124BI GAGCTC 1 cut(s) 667
PspCI CACGTG 1 cut(s) 515
PspFI CCCAGC 1 cut(s) 377
PspN4I GGNNCC 3 cut(s) 24, 777, 905
PspPI GGNCC 2 cut(s) 23, 830
PstI CTGCAG 1 cut(s) 643
PsuI RGATCY 1 cut(s) 16
PvuII CAGCTG 1 cut(s) 377
RsaI GTAC 7 cut(s) 411, 544, 697, 1071, 1232, 1244, 1538
RsaNI GTAC 7 cut(s) 410, 543, 696, 1070, 1231, 1243, 1537
RseI CAYNNNNRTG 3 cut(s) 125, 513, 808
SacI GAGCTC 1 cut(s) 667
SalI GTCGAC 1 cut(s) 1185
SaqAI TTAA 5 cut(s) 600, 684, 768, 897, 948
SatI GCNGC 3 cut(s) 639, 642, 1139
Sau3AI GATC 7 cut(s) 16, 49, 836, 1021, 1102, 1395, 1489
Sau96I GGNCC 2 cut(s) 23, 830
ScrFI CCNGG 2 cut(s) 21, 1258
SduI GDGCHC 2 cut(s) 120, 667
SfaNI GCATC 2 cut(s) 472, 980
SfcI CTRYAG 2 cut(s) 639, 658
SgrDI CGTCGACG 1 cut(s) 1185
SinI GGWCC 2 cut(s) 23, 830
SmiMI CAYNNNNRTG 3 cut(s) 125, 513, 808
SseBI AGGCCT 1 cut(s) 869
SsiI CCGC 3 cut(s) 237, 862, 967
SspI AATATT 1 cut(s) 850
SspMI CTAG 1 cut(s) 369
SstI GAGCTC 1 cut(s) 667
StuI AGGCCT 1 cut(s) 869
StyD4I CCNGG 2 cut(s) 19, 1256
StyI CCWWGG 1 cut(s) 870
TaaI ACNGT 3 cut(s) 845, 982, 1184
TaiI ACGT 6 cut(s) 125, 517, 1192, 1459, 1477, 1518
TaqI TCGA 4 cut(s) 8, 1093, 1186, 1352
TatI WGTACW 4 cut(s) 542, 1069, 1230, 1536
TfiI GAWTC 7 cut(s) 202, 875, 1090, 1153, 1280, 1289, 1343
Tru1I TTAA 5 cut(s) 600, 684, 768, 897, 948
Tru9I TTAA 5 cut(s) 600, 684, 768, 897, 948
TscAI CASTG 2 cut(s) 731, 1411
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 3 cut(s) 638, 641, 1138
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 5 cut(s) 266, 405, 627, 1236, 1335
TspRI CASTG 2 cut(s) 731, 1411
Van91I CCANNNNNTGG 2 cut(s) 785, 1505
VpaK11BI GGWCC 2 cut(s) 23, 830
XapI RAATTY 3 cut(s) 394, 604, 623
XceI RCATGY 1 cut(s) 1048
XmiI GTMKAC 2 cut(s) 1186, 1453
XspI CTAG 1 cut(s) 369
ZraI GACGTC 1 cut(s) 1190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.