Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002412.1

Orthogroup ID

OG0003095

Physical Location & Seq

Genomic Coordinates Reverse (-)

6100 .. 7984

Gene Structure 1885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002412.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

atggagtcacatgtggatcctggaccaattgataagtctttactttacgatcaagacaatcacatcagttcagcaatttgggatggacaggagcgtggtgtgcttagatgtcatgaacacacttcaatgcttgagcactggaaactcacgcctaaacaaattgagttggtggagagggctggatttgggtacttcagatcaattccgacaattattcttgacaattcacttatctcggcccttgttgagaggtggaggagggaaacaaatacttttcatttacctgttggagaaatgagtataacacttgaagatgttgcacttatactggggctaccagttgacggaaatcctgttataggccctacagtgaggacacccagcatagtgtgtgaacagttactggggaaagtaccaaaggacctaaatgggggaatgttgaagctaaattggttgagagaattcttttccaaatgtcctgacgatgcatcagttgaagagacggcgcgccatacacgggcttacctcctatatcttgtgggatgtacaatattttccacaactactgggaataaagtctctgtttcatttctcacactatttgagaattttgatgaagctggaagatttgcatggggtgcagcagcattggcgttcctctatagagctcttggtaacgcctcccttaaatctcaaggcacaattagtggctctttgacactactgcagtgttggagttattatcatctgaatgttggccaaccaaagttcaatgaagagccaaaccagggttgttttccatttgctcttaggtggaaaggacgatctagtggaacaagatcgaaaactaacataattgcctaccgcaaggccttggattcccttcaacattatgatgttaagtggtatccatacaaagatttggattctacagttatacccgaagatataaacagtaatctaattttacggacatcaaaaactatgttgatatgctttggtaaggcagaaaggcacctccctgatcgttgccttaggcagtttggcatgcttcaacctatcccagagcatcctcagaaatgggagaggaagattcctgctcttgatcagggattagacttttcaaaggagatggaggtggagctgaaagggaaaatacgctcagaaattagggaatggttagagcgtggtttctatattctggaagacgaggaaggtgtggatgaaagcgagtacatggagtggtatgagaatattactcgtaaatatgttggaaggcctgaatctttagaatccgagtttcagagaatggttagtgctatgagagacatagaaaatatagctgattcattgccaatggcagagatggtttcccaagataggaagttgcttggtgaagtcaaaagcacattgcaaacatgttttaatgatgtcgttggaaattcaaaaaagggtaggtgtaagaatgctgtaaagcgtaagagggagggaggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMD

Protein Analysis

498

Amino Acids

56.85

Weight (kDa)

6.19

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25010
fragaria_vesca	FvH4_3g28611 FvH4_6g33711 FvH4_6g33711 FvH4_6g33711
malus_domestica	MD09G1191600.v1.1
prunus_persica	Prupe.3G047800_v2.0.a1 Prupe.4G252400_v2.0.a1
pyrus_communis	pycom09g10810
rosa_chinensis	RchiOBHm_Chr2g0143601 RchiOBHm_Chr5g0052481
rosa_laevigata	RLG00000020050 RLG00000034816
rosa_multiflora	Rmu_sc0002311.1_g000001 Rmu_sc0002412.1_g000002 Rmu_sc0006803.1_g000043
rosa_roxburghii	Rroxscaffold_1G00028360 Rroxscaffold_2G00101610
rosa_rugosa	Rorug02G0384100 Rorug02G0384100 Rorug02G0384200 Rorug02G0384300 Rorug02G0384300 Rorug02G0384400 Rorug02G0384400 Rorug05G0271600 Rorug05G0271700
rosa_samantha	Rh2AG436100 Rh2BG443700 Rh2CG422300 Rh2DG454100 Rh5AG344300 Rh5BG355400 Rh5CG380800 Rh5DG370600
rosa_wichuraiana	Rw2G035540 Rw5G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1014
AccII	CGCG	1 cut(s)	508
AciI	CCGC	1 cut(s)	865
AclWI	GGATC	2 cut(s)	11, 24
AcoI	YGGCCR	1 cut(s)	757
AcsI	RAATTY	3 cut(s)	461, 607, 1441
AcuI	CTGAAG	1 cut(s)	178
AfaI	GTAC	4 cut(s)	191, 414, 547, 1235
AfiI	CCNNNNNNNGG	6 cut(s)	344, 359, 430, 517, 788, 1380
AflIII	ACRYGT	2 cut(s)	10, 1418
AgsI	TTSAA	9 cut(s)	126, 311, 442, 497, 772, 887, 1055, 1125, 1446
AjnI	CCWGG	2 cut(s)	19, 786
AluBI	AGCT	5 cut(s)	445, 620, 668, 1144, 1343
AluI	AGCT	5 cut(s)	445, 620, 668, 1144, 1343
Alw21I	GWGCWC	2 cut(s)	138, 670
Alw26I	GTCTC	3 cut(s)	494, 583, 1320
AlwI	GGATC	2 cut(s)	11, 24
AlwNI	CAGNNNCTG	1 cut(s)	403
AoxI	GGCC	5 cut(s)	237, 361, 757, 870, 1277
ApeKI	GCWGC	2 cut(s)	641, 644
ApoI	RAATTY	3 cut(s)	461, 607, 1441
AscI	GGCGCGCC	1 cut(s)	506
AspLEI	GCGC	2 cut(s)	508, 510
AspS9I	GGNCC	4 cut(s)	23, 238, 362, 421
AsuHPI	GGTGA	1 cut(s)	1406
AvaII	GGWCC	2 cut(s)	23, 421
AxyI	CCTNAGG	1 cut(s)	1034
BalI	TGGCCA	1 cut(s)	759
BamHI	GGATCC	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	1014
BanII	GRGCYC	1 cut(s)	670
BbsI	GAAGAC	1 cut(s)	1212
Bbv12I	GWGCWC	2 cut(s)	138, 670
BbvI	GCAGC	2 cut(s)	653, 656
BccI	CCATC	3 cut(s)	77, 1126, 1360
BceAI	ACGGC	1 cut(s)	519
BciT130I	CCWGG	2 cut(s)	21, 788
BciVI	GTATCC	1 cut(s)	918
BclI	TGATCA	1 cut(s)	1105
BcoDI	GTCTC	3 cut(s)	494, 583, 1320
BfaI	CTAG	1 cut(s)	828
BfmI	CTRYAG	4 cut(s)	366, 661, 725, 930
BfuI	GTATCC	1 cut(s)	918
BisI	GCNGC	2 cut(s)	642, 645
BlsI	GCNGC	2 cut(s)	643, 646
Bme1390I	CCNGG	2 cut(s)	21, 788
Bme18I	GGWCC	2 cut(s)	23, 421
BmgT120I	GGNCC	4 cut(s)	23, 238, 362, 421
BmiI	GGNNCC	2 cut(s)	18, 1016
BmrFI	CCNGG	2 cut(s)	21, 788
BmrI	ACTGGG	3 cut(s)	338, 413, 576
BmsI	GCATC	3 cut(s)	475, 497, 1078
BmuI	ACTGGG	3 cut(s)	338, 413, 576
BpiI	GAAGAC	1 cut(s)	1212
BpuEI	CTTGAG	2 cut(s)	152, 678
BsaJI	CCNNGG	2 cut(s)	787, 873
Bsc4I	CCNNNNNNNGG	6 cut(s)	344, 359, 430, 517, 788, 1380
Bse1I	ACTGG	5 cut(s)	143, 333, 338, 408, 571
Bse21I	CCTNAGG	1 cut(s)	1034
Bse3DI	GCAATG	2 cut(s)	1349, 1409
BseBI	CCWGG	2 cut(s)	21, 788
BseDI	CCNNGG	2 cut(s)	787, 873
BseGI	GGATG	4 cut(s)	88, 548, 1069, 1228
BseLI	CCNNNNNNNGG	6 cut(s)	344, 359, 430, 517, 788, 1380
BseMI	GCAATG	2 cut(s)	1349, 1409
BseMII	CTCAG	2 cut(s)	1088, 1176
BseNI	ACTGG	5 cut(s)	143, 333, 338, 408, 571
BsePI	GCGCGC	1 cut(s)	506
BseRI	GAGGAG	1 cut(s)	271
BseXI	GCAGC	2 cut(s)	653, 656
BseYI	CCCAGC	1 cut(s)	380
BsgI	GTGCAG	1 cut(s)	660
Bsh1236I	CGCG	1 cut(s)	508
BshFI	GGCC	5 cut(s)	239, 363, 759, 872, 1279
BshNI	GGYRCC	1 cut(s)	1014
BsiHKAI	GWGCWC	2 cut(s)	138, 670
BslI	CCNNNNNNNGG	6 cut(s)	344, 359, 430, 517, 788, 1380
BsmAI	GTCTC	3 cut(s)	494, 583, 1320
BsmBI	CGTCTC	1 cut(s)	494
BsmI	GAATGC	1 cut(s)	1471
BsnI	GGCC	5 cut(s)	239, 363, 759, 872, 1279
Bsp1286I	GDGCHC	2 cut(s)	138, 670
Bsp1407I	TGTACA	1 cut(s)	545
Bsp143I	GATC	7 cut(s)	16, 49, 197, 824, 839, 1024, 1105
BspACI	CCGC	1 cut(s)	865
BspANI	GGCC	5 cut(s)	239, 363, 759, 872, 1279
BspCNI	CTCAG	2 cut(s)	1087, 1175
BspFNI	CGCG	1 cut(s)	508
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	2 cut(s)	18, 1016
BspMAI	CTGCAG	1 cut(s)	729
BspPI	GGATC	2 cut(s)	11, 24
BspQI	GCTCTTC	1 cut(s)	771
BspT107I	GGYRCC	1 cut(s)	1014
BsrDI	GCAATG	2 cut(s)	1349, 1409
BsrGI	TGTACA	1 cut(s)	545
BsrI	ACTGG	5 cut(s)	143, 333, 338, 408, 571
BssECI	CCNNGG	2 cut(s)	787, 873
BssHII	GCGCGC	1 cut(s)	506
BssMI	GATC	7 cut(s)	16, 49, 197, 824, 839, 1024, 1105
BssT1I	CCWWGG	1 cut(s)	873
Bst2UI	CCWGG	2 cut(s)	21, 788
Bst4CI	ACNGT	4 cut(s)	370, 399, 934, 956
Bst6I	CTCTTC	2 cut(s)	492, 771
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstAUI	TGTACA	1 cut(s)	545
BstC8I	GCNNGC	2 cut(s)	508, 1049
BstDEI	CTNAG	5 cut(s)	104, 809, 1034, 1074, 1162
BstENI	CCTNNNNNAGG	1 cut(s)	357
BstF5I	GGATG	4 cut(s)	88, 548, 1069, 1228
BstFNI	CGCG	1 cut(s)	508
BstHHI	GCGC	2 cut(s)	508, 510
BstKTI	GATC	7 cut(s)	19, 52, 200, 827, 842, 1027, 1108
BstMAI	GTCTC	3 cut(s)	494, 583, 1320
BstMBI	GATC	7 cut(s)	16, 49, 197, 824, 839, 1024, 1105
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 638, 650
BstNI	CCWGG	2 cut(s)	21, 788
BstNSI	RCATGY	3 cut(s)	14, 1051, 1422
BstSCI	CCNGG	2 cut(s)	19, 786
BstSFI	CTRYAG	4 cut(s)	366, 661, 725, 930
BstUI	CGCG	1 cut(s)	508
BstV1I	GCAGC	2 cut(s)	653, 656
BstV2I	GAAGAC	1 cut(s)	1212
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
Bsu36I	CCTNAGG	1 cut(s)	1034
BsuI	GTATCC	1 cut(s)	918
BsuRI	GGCC	5 cut(s)	239, 363, 759, 872, 1279
BtsCI	GGATG	4 cut(s)	88, 548, 1069, 1228
BtsI	GCAGTG	1 cut(s)	734
BtsIMutI	CAGTG	3 cut(s)	136, 375, 734
Cac8I	GCNNGC	2 cut(s)	508, 1049
CaiI	CAGNNNCTG	1 cut(s)	403
CciI	TCATGA	1 cut(s)	112
CfoI	GCGC	2 cut(s)	508, 510
Cfr13I	GGNCC	4 cut(s)	23, 238, 362, 421
Csp6I	GTAC	4 cut(s)	190, 413, 546, 1234
CviAII	CATG	6 cut(s)	11, 113, 633, 1048, 1237, 1419
CviQI	GTAC	4 cut(s)	190, 413, 546, 1234
DdeI	CTNAG	5 cut(s)	104, 809, 1034, 1074, 1162
DpnI	GATC	7 cut(s)	18, 51, 199, 826, 841, 1026, 1107
DpnII	GATC	7 cut(s)	16, 49, 197, 824, 839, 1024, 1105
EaeI	YGGCCR	1 cut(s)	757
Eam1104I	CTCTTC	2 cut(s)	492, 771
EarI	CTCTTC	2 cut(s)	492, 771
Ecl136II	GAGCTC	1 cut(s)	668
Eco130I	CCWWGG	1 cut(s)	873
Eco147I	AGGCCT	2 cut(s)	872, 1279
Eco24I	GRGCYC	1 cut(s)	670
Eco47I	GGWCC	2 cut(s)	23, 421
Eco53kI	GAGCTC	1 cut(s)	668
Eco57I	CTGAAG	1 cut(s)	178
Eco81I	CCTNAGG	1 cut(s)	1034
EcoICRI	GAGCTC	1 cut(s)	668
EcoNI	CCTNNNNNAGG	1 cut(s)	357
EcoO109I	RGGNCCY	2 cut(s)	362, 421
EcoRI	GAATTC	1 cut(s)	461
EcoRII	CCWGG	2 cut(s)	19, 786
EcoT14I	CCWWGG	1 cut(s)	873
EcoT22I	ATGCAT	1 cut(s)	490
EcoT38I	GRGCYC	1 cut(s)	670
ErhI	CCWWGG	1 cut(s)	873
Esp3I	CGTCTC	1 cut(s)	494
FaeI	CATG	6 cut(s)	14, 116, 636, 1051, 1240, 1422
FatI	CATG	6 cut(s)	10, 112, 632, 1047, 1236, 1418
FbaI	TGATCA	1 cut(s)	1105
Fnu4HI	GCNGC	2 cut(s)	642, 645
FokI	GGATG	4 cut(s)	95, 555, 1056, 1235
FriOI	GRGCYC	1 cut(s)	670
Fsp4HI	GCNGC	2 cut(s)	642, 645
FspBI	CTAG	1 cut(s)	828
GlaI	GCGC	2 cut(s)	507, 509
GluI	GCNGC	2 cut(s)	642, 645
GsaI	CCCAGC	1 cut(s)	384
HaeIII	GGCC	5 cut(s)	239, 363, 759, 872, 1279
HhaI	GCGC	2 cut(s)	508, 510
Hin1II	CATG	6 cut(s)	14, 116, 636, 1051, 1240, 1422
Hin6I	GCGC	2 cut(s)	506, 508
HinP1I	GCGC	2 cut(s)	506, 508
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	7 cut(s)	5, 878, 926, 1093, 1283, 1292, 1346
HphI	GGTGA	1 cut(s)	1406
Hpy166II	GTNNAC	2 cut(s)	343, 395
Hpy188I	TCNGA	7 cut(s)	197, 207, 750, 1077, 1165, 1297, 1305
Hpy188III	TCNNGA	6 cut(s)	53, 113, 218, 479, 1103, 1202
Hpy8I	GTNNAC	2 cut(s)	343, 395
HpyAV	CCTTC	3 cut(s)	893, 1208, 1269
HpyCH4III	ACNGT	4 cut(s)	370, 399, 934, 956
HpyCH4V	TGCA	6 cut(s)	320, 488, 632, 641, 727, 1414
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 638, 650
HpyF3I	CTNAG	5 cut(s)	104, 809, 1034, 1074, 1162
Hsp92II	CATG	6 cut(s)	14, 116, 636, 1051, 1240, 1422
HspAI	GCGC	2 cut(s)	506, 508
Ksp22I	TGATCA	1 cut(s)	1105
Kzo9I	GATC	7 cut(s)	16, 49, 197, 824, 839, 1024, 1105
LguI	GCTCTTC	1 cut(s)	771
LmnI	GCTCC	2 cut(s)	91, 1141
Lsp1109I	GCAGC	2 cut(s)	653, 656
LweI	GCATC	3 cut(s)	475, 497, 1078
MaeI	CTAG	1 cut(s)	828
MaeIII	GTNAC	3 cut(s)	6, 399, 674
MalI	GATC	7 cut(s)	18, 51, 199, 826, 841, 1026, 1107
MboI	GATC	7 cut(s)	16, 49, 197, 824, 839, 1024, 1105
MboII	GAAGA	7 cut(s)	323, 509, 636, 788, 956, 1102, 1217
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	2 cut(s)	138, 670
MlsI	TGGCCA	1 cut(s)	759
MluNI	TGGCCA	1 cut(s)	759
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	5 cut(s)	230, 268, 713, 1252, 1417
Mox20I	TGGCCA	1 cut(s)	759
Mph1103I	ATGCAT	1 cut(s)	490
MscI	TGGCCA	1 cut(s)	759
MseI	TTAA	3 cut(s)	687, 900, 1425
MslI	CAYNNNNRTG	3 cut(s)	125, 750, 894
Msp20I	TGGCCA	1 cut(s)	759
MspR9I	CCNGG	2 cut(s)	21, 788
MunI	CAATTG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	1471
MvaI	CCWGG	2 cut(s)	21, 788
MvnI	CGCG	1 cut(s)	508
MwoI	GCNNNNNNNGC	3 cut(s)	100, 638, 650
NdeII	GATC	7 cut(s)	16, 49, 197, 824, 839, 1024, 1105
NlaIII	CATG	6 cut(s)	14, 116, 636, 1051, 1240, 1422
NlaIV	GGNNCC	2 cut(s)	18, 1016
NmeAIII	GCCGAG	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	490
NspI	RCATGY	3 cut(s)	14, 1051, 1422
PaeI	GCATGC	1 cut(s)	1051
PagI	TCATGA	1 cut(s)	112
PalAI	GGCGCGCC	1 cut(s)	506
PauI	GCGCGC	1 cut(s)	506
PceI	AGGCCT	2 cut(s)	872, 1279
PciI	ACATGT	2 cut(s)	10, 1418
PciSI	GCTCTTC	1 cut(s)	771
PctI	GAATGC	1 cut(s)	1471
PfeI	GAWTC	6 cut(s)	878, 926, 1093, 1283, 1292, 1346
PfoI	TCCNGGA	1 cut(s)	19
PkrI	GCNGC	2 cut(s)	643, 646
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	421
PscI	ACATGT	2 cut(s)	10, 1418
Psp124BI	GAGCTC	1 cut(s)	670
Psp5II	RGGWCCY	1 cut(s)	421
Psp6I	CCWGG	2 cut(s)	19, 786
PspFI	CCCAGC	1 cut(s)	380
PspGI	CCWGG	2 cut(s)	19, 786
PspN4I	GGNNCC	2 cut(s)	18, 1016
PspPI	GGNCC	4 cut(s)	23, 238, 362, 421
PspPPI	RGGWCCY	1 cut(s)	421
PstI	CTGCAG	1 cut(s)	729
PstNI	CAGNNNCTG	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	16
PteI	GCGCGC	1 cut(s)	506
RsaI	GTAC	4 cut(s)	191, 414, 547, 1235
RsaNI	GTAC	4 cut(s)	190, 413, 546, 1234
RseI	CAYNNNNRTG	3 cut(s)	125, 750, 894
SacI	GAGCTC	1 cut(s)	670
SapI	GCTCTTC	1 cut(s)	771
SaqAI	TTAA	3 cut(s)	687, 900, 1425
SatI	GCNGC	2 cut(s)	642, 645
Sau3AI	GATC	7 cut(s)	16, 49, 197, 824, 839, 1024, 1105
Sau96I	GGNCC	4 cut(s)	23, 238, 362, 421
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	21, 788
SduI	GDGCHC	2 cut(s)	138, 670
SfaNI	GCATC	3 cut(s)	475, 497, 1078
SfcI	CTRYAG	4 cut(s)	366, 661, 725, 930
SgsI	GGCGCGCC	1 cut(s)	506
SinI	GGWCC	2 cut(s)	23, 421
SmiMI	CAYNNNNRTG	3 cut(s)	125, 750, 894
SmlI	CTYRAG	2 cut(s)	131, 693
SmoI	CTYRAG	2 cut(s)	131, 693
SphI	GCATGC	1 cut(s)	1051
SseBI	AGGCCT	2 cut(s)	872, 1279
SsiI	CCGC	1 cut(s)	865
SspI	AATATT	2 cut(s)	552, 1255
SspMI	CTAG	1 cut(s)	828
SstI	GAGCTC	1 cut(s)	670
StuI	AGGCCT	2 cut(s)	872, 1279
StyD4I	CCNGG	2 cut(s)	19, 786
StyI	CCWWGG	1 cut(s)	873
TaaI	ACNGT	4 cut(s)	370, 399, 934, 956
TaqI	TCGA	1 cut(s)	842
TatI	WGTACW	2 cut(s)	545, 1233
TfiI	GAWTC	6 cut(s)	878, 926, 1093, 1283, 1292, 1346
Tru1I	TTAA	3 cut(s)	687, 900, 1425
Tru9I	TTAA	3 cut(s)	687, 900, 1425
TscAI	CASTG	3 cut(s)	143, 375, 734
TseFI	GTSAC	1 cut(s)	6
TseI	GCWGC	2 cut(s)	641, 644
Tsp45I	GTSAC	1 cut(s)	6
TspDTI	ATGAA	7 cut(s)	129, 266, 576, 630, 789, 1239, 1338
TspGWI	ACGGA	2 cut(s)	360, 985
TspRI	CASTG	3 cut(s)	143, 375, 734
VpaK11BI	GGWCC	2 cut(s)	23, 421
XagI	CCTNNNNNAGG	1 cut(s)	357
XapI	RAATTY	3 cut(s)	461, 607, 1441
XceI	RCATGY	3 cut(s)	14, 1051, 1422
XspI	CTAG	1 cut(s)	828
Zsp2I	ATGCAT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.