Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003095

Physical Location & Seq

Genomic Coordinates Reverse (-)

8893226 .. 8894178

Gene Structure 953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g10810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGAGTCACACATAGATCCTGGACCAGTTGATAAGTCTGTACTTTATGATCAAGAAAATCATATCTCTTCAGCGATTTGGGATGGACAGGAGCGTGGCGTGCTTAGATGTCACGAACACACTTCGATGCTTGAGCAATGGAGACTCATACCTCAACAAGTTGAGTTGGTTGAGAAGGCCGGTTTTAAACACTTCAGATCAATACCGACAATTGTTCTTGACAATTCACTAATATCGGCACTTGTTGAGAGGTGGAGGAGAGAAACAAATACATTTCATTTGCCTGTTGGAGAAATGACTATAACGCTTGAGGATGTTGCGCTTATACTTGGGCTACCAATCGATGGAAAACCTGTTATTGGTGTACCGGTGAAGACACCCAACTCGGTATGTGAAGACTTGCTTGGGAAATCACCAAAGGACCTGAATGGGGGAATGATGAAGCTAAATTGGTTGAGAGAGTGTTTTTCTAGATGTCCTGAAGATGCACCGATTGAAGAGATTGAGCGCCACACTCGTGCTTACCTCCTATATATTGTTGGCTGTACAATATTTTCCACAACCACTGGAAATAAAGTCTCTGTTACATTTCTTCCGCTGTTTGAAAAGTTTGAAGAAGCTGGAAAATATGCATGGGGTGCAGCAGCATTGGCATTCCTCTATAGAGCTCTTGGTAATGCCTCCCTTAAATCTCAAGGCACGATCAGTGGCTCTTTGACGCTACTTGCTGGAGTTACTATCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMD

Protein Analysis

249

Amino Acids

27.55

Weight (kDa)

5.67

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25010
fragaria_vesca	FvH4_3g28611 FvH4_6g33711 FvH4_6g33711 FvH4_6g33711
malus_domestica	MD09G1191600.v1.1
prunus_persica	Prupe.3G047800_v2.0.a1 Prupe.4G252400_v2.0.a1
pyrus_communis	pycom09g10810
rosa_chinensis	RchiOBHm_Chr2g0143601 RchiOBHm_Chr5g0052481
rosa_laevigata	RLG00000020050 RLG00000034816
rosa_multiflora	Rmu_sc0002311.1_g000001 Rmu_sc0002412.1_g000002 Rmu_sc0006803.1_g000043
rosa_roxburghii	Rroxscaffold_1G00028360 Rroxscaffold_2G00101610
rosa_rugosa	Rorug02G0384100 Rorug02G0384100 Rorug02G0384200 Rorug02G0384300 Rorug02G0384300 Rorug02G0384400 Rorug02G0384400 Rorug05G0271600 Rorug05G0271700
rosa_samantha	Rh2AG436100 Rh2BG443700 Rh2CG422300 Rh2DG454100 Rh5AG344300 Rh5BG355400 Rh5CG380800 Rh5DG370600
rosa_wichuraiana	Rw2G035540 Rw5G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	344
AciI	CCGC	1 cut(s)	596
AclWI	GGATC	1 cut(s)	11
AcuI	CTGAAG	3 cut(s)	54, 178, 501
AfaI	GTAC	3 cut(s)	42, 366, 547
AfiI	CCNNNNNNNGG	3 cut(s)	344, 359, 430
AgeI	ACCGGT	1 cut(s)	367
AgsI	TTSAA	3 cut(s)	497, 605, 614
AjnI	CCWGG	1 cut(s)	19
AjuI	GAANNNNNNNTTGG	2 cut(s)	387, 419
AleI	CACNNNNGTG	1 cut(s)	516
AluBI	AGCT	3 cut(s)	445, 620, 668
AluI	AGCT	3 cut(s)	445, 620, 668
Alw21I	GWGCWC	1 cut(s)	670
Alw26I	GTCTC	2 cut(s)	136, 583
AlwI	GGATC	1 cut(s)	11
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	2 cut(s)	641, 644
AsiGI	ACCGGT	1 cut(s)	367
AspLEI	GCGC	2 cut(s)	322, 510
AspS9I	GGNCC	2 cut(s)	23, 421
AsuHPI	GGTGA	3 cut(s)	382, 405, 733
AvaII	GGWCC	2 cut(s)	23, 421
BanII	GRGCYC	1 cut(s)	670
BauI	CACGAG	1 cut(s)	516
BbsI	GAAGAC	2 cut(s)	380, 402
Bbv12I	GWGCWC	1 cut(s)	670
BbvI	GCAGC	2 cut(s)	653, 656
BccI	CCATC	2 cut(s)	77, 338
BciT130I	CCWGG	1 cut(s)	21
BclI	TGATCA	1 cut(s)	49
BcoDI	GTCTC	2 cut(s)	136, 583
BfaI	CTAG	1 cut(s)	471
BfmI	CTRYAG	1 cut(s)	661
BfoI	RGCGCY	1 cut(s)	511
BisI	GCNGC	2 cut(s)	642, 645
BlsI	GCNGC	2 cut(s)	643, 646
Bme1390I	CCNGG	1 cut(s)	21
Bme18I	GGWCC	2 cut(s)	23, 421
BmgT120I	GGNCC	2 cut(s)	23, 421
BmrFI	CCNGG	1 cut(s)	21
BmsI	GCATC	2 cut(s)	117, 475
BpiI	GAAGAC	2 cut(s)	380, 402
BpuEI	CTTGAG	3 cut(s)	152, 329, 678
Bsa29I	ATCGAT	1 cut(s)	342
BsaWI	WCCGGW	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	3 cut(s)	344, 359, 430
Bse118I	RCCGGY	2 cut(s)	179, 367
Bse1I	ACTGG	2 cut(s)	26, 571
Bse3DI	GCAATG	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	21
BseCI	ATCGAT	1 cut(s)	342
BseGI	GGATG	2 cut(s)	88, 319
BseLI	CCNNNNNNNGG	3 cut(s)	344, 359, 430
BseMI	GCAATG	1 cut(s)	143
BseNI	ACTGG	2 cut(s)	26, 571
BseRI	GAGGAG	1 cut(s)	271
BseXI	GCAGC	2 cut(s)	653, 656
BsgI	GTGCAG	1 cut(s)	660
BshFI	GGCC	1 cut(s)	179
BshTI	ACCGGT	1 cut(s)	367
BshVI	ATCGAT	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	670
BsiSI	CCGG	2 cut(s)	180, 368
BslI	CCNNNNNNNGG	3 cut(s)	344, 359, 430
BsmAI	GTCTC	2 cut(s)	136, 583
BsmI	GAATGC	1 cut(s)	653
BsnI	GGCC	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp1407I	TGTACA	1 cut(s)	545
Bsp143I	GATC	4 cut(s)	16, 49, 197, 702
BspACI	CCGC	1 cut(s)	596
BspANI	GGCC	1 cut(s)	179
BspDI	ATCGAT	1 cut(s)	342
BspPI	GGATC	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	143
BsrFI	RCCGGY	2 cut(s)	179, 367
BsrGI	TGTACA	1 cut(s)	545
BsrI	ACTGG	2 cut(s)	26, 571
BssAI	RCCGGY	2 cut(s)	179, 367
BssMI	GATC	4 cut(s)	16, 49, 197, 702
BssSI	CACGAG	1 cut(s)	516
Bst2BI	CACGAG	1 cut(s)	516
Bst2UI	CCWGG	1 cut(s)	21
Bst6I	CTCTTC	2 cut(s)	73, 492
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstAUI	TGTACA	1 cut(s)	545
BstC8I	GCNNGC	1 cut(s)	101
BstDEI	CTNAG	1 cut(s)	104
BstF5I	GGATG	2 cut(s)	88, 319
BstH2I	RGCGCY	1 cut(s)	511
BstHHI	GCGC	2 cut(s)	322, 510
BstKTI	GATC	4 cut(s)	19, 52, 200, 705
BstMAI	GTCTC	2 cut(s)	136, 583
BstMBI	GATC	4 cut(s)	16, 49, 197, 702
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 638, 650
BstNI	CCWGG	1 cut(s)	21
BstSCI	CCNGG	1 cut(s)	19
BstSFI	CTRYAG	1 cut(s)	661
BstV1I	GCAGC	2 cut(s)	653, 656
BstV2I	GAAGAC	2 cut(s)	380, 402
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
Bsu15I	ATCGAT	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	179
BsuTUI	ATCGAT	1 cut(s)	342
BtsCI	GGATG	2 cut(s)	88, 319
BtsIMutI	CAGTG	2 cut(s)	564, 712
Cac8I	GCNNGC	1 cut(s)	101
CfoI	GCGC	2 cut(s)	322, 510
Cfr10I	RCCGGY	2 cut(s)	179, 367
Cfr13I	GGNCC	2 cut(s)	23, 421
ClaI	ATCGAT	1 cut(s)	342
CseI	GACGC	1 cut(s)	727
Csp6I	GTAC	3 cut(s)	41, 365, 546
CspAI	ACCGGT	1 cut(s)	367
CviAII	CATG	1 cut(s)	633
CviJI	RGCY	7 cut(s)	179, 334, 445, 543, 620, 668, 711
CviKI_1	RGCY	7 cut(s)	179, 334, 445, 543, 620, 668, 711
CviQI	GTAC	3 cut(s)	41, 365, 546
DdeI	CTNAG	1 cut(s)	104
DpnI	GATC	4 cut(s)	18, 51, 199, 704
DpnII	GATC	4 cut(s)	16, 49, 197, 702
DraI	TTTAAA	1 cut(s)	187
Eam1104I	CTCTTC	2 cut(s)	73, 492
EarI	CTCTTC	2 cut(s)	73, 492
Ecl136II	GAGCTC	1 cut(s)	668
Eco24I	GRGCYC	1 cut(s)	670
Eco47I	GGWCC	2 cut(s)	23, 421
Eco53kI	GAGCTC	1 cut(s)	668
Eco57I	CTGAAG	3 cut(s)	54, 178, 501
EcoICRI	GAGCTC	1 cut(s)	668
EcoO109I	RGGNCCY	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	19
EcoT22I	ATGCAT	1 cut(s)	634
EcoT38I	GRGCYC	1 cut(s)	670
FaeI	CATG	1 cut(s)	636
FalI	AAGNNNNNCTT	2 cut(s)	387, 419
FatI	CATG	1 cut(s)	632
FbaI	TGATCA	1 cut(s)	49
Fnu4HI	GCNGC	2 cut(s)	642, 645
FokI	GGATG	2 cut(s)	95, 326
FriOI	GRGCYC	1 cut(s)	670
Fsp4HI	GCNGC	2 cut(s)	642, 645
FspBI	CTAG	1 cut(s)	471
GlaI	GCGC	2 cut(s)	321, 509
GluI	GCNGC	2 cut(s)	642, 645
HaeII	RGCGCY	1 cut(s)	511
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	2 cut(s)	180, 368
HgaI	GACGC	1 cut(s)	727
HhaI	GCGC	2 cut(s)	322, 510
Hin1II	CATG	1 cut(s)	636
Hin6I	GCGC	2 cut(s)	320, 508
HinP1I	GCGC	2 cut(s)	320, 508
HinfI	GANTC	2 cut(s)	5, 144
HpaII	CCGG	2 cut(s)	180, 368
HphI	GGTGA	3 cut(s)	382, 405, 733
Hpy166II	GTNNAC	1 cut(s)	365
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	5 cut(s)	53, 113, 218, 471, 479
Hpy8I	GTNNAC	1 cut(s)	365
HpyAV	CCTTC	1 cut(s)	169
HpyCH4V	TGCA	3 cut(s)	488, 632, 641
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 638, 650
HpyF3I	CTNAG	1 cut(s)	104
Hsp92II	CATG	1 cut(s)	636
HspAI	GCGC	2 cut(s)	320, 508
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	4 cut(s)	16, 49, 197, 702
LmnI	GCTCC	1 cut(s)	91
Lsp1109I	GCAGC	2 cut(s)	653, 656
LweI	GCATC	2 cut(s)	117, 475
MaeI	CTAG	1 cut(s)	471
MaeIII	GTNAC	4 cut(s)	6, 110, 583, 733
MalI	GATC	4 cut(s)	18, 51, 199, 704
MboI	GATC	4 cut(s)	16, 49, 197, 702
MboII	GAAGA	7 cut(s)	60, 385, 407, 494, 509, 584, 626
MfeI	CAATTG	1 cut(s)	210
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	670
MluCI	AATT	3 cut(s)	210, 223, 448
MlyI	GAGTC	2 cut(s)	14, 138
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	7 cut(s)	162, 243, 249, 304, 536, 668, 691
Mph1103I	ATGCAT	1 cut(s)	634
MseI	TTAA	2 cut(s)	186, 687
MslI	CAYNNNNRTG	2 cut(s)	125, 516
MspA1I	CMGCKG	1 cut(s)	598
MspI	CCGG	2 cut(s)	180, 368
MspR9I	CCNGG	1 cut(s)	21
MunI	CAATTG	1 cut(s)	210
Mva1269I	GAATGC	1 cut(s)	653
MvaI	CCWGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	3 cut(s)	100, 638, 650
NdeII	GATC	4 cut(s)	16, 49, 197, 702
NlaIII	CATG	1 cut(s)	636
NmuCI	GTSAC	2 cut(s)	6, 110
NsiI	ATGCAT	1 cut(s)	634
OliI	CACNNNNGTG	1 cut(s)	516
PctI	GAATGC	1 cut(s)	653
PflMI	CCANNNNNTGG	1 cut(s)	344
PfoI	TCCNGGA	1 cut(s)	19
PinAI	ACCGGT	1 cut(s)	367
PkrI	GCNGC	2 cut(s)	643, 646
PleI	GAGTC	2 cut(s)	13, 138
PpsI	GAGTC	2 cut(s)	13, 138
PpuMI	RGGWCCY	1 cut(s)	421
Psp124BI	GAGCTC	1 cut(s)	670
Psp5II	RGGWCCY	1 cut(s)	421
Psp6I	CCWGG	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	19
PspPI	GGNCC	2 cut(s)	23, 421
PspPPI	RGGWCCY	1 cut(s)	421
PsuI	RGATCY	1 cut(s)	16
RsaI	GTAC	3 cut(s)	42, 366, 547
RsaNI	GTAC	3 cut(s)	41, 365, 546
RseI	CAYNNNNRTG	2 cut(s)	125, 516
SacI	GAGCTC	1 cut(s)	670
SaqAI	TTAA	2 cut(s)	186, 687
SatI	GCNGC	2 cut(s)	642, 645
Sau3AI	GATC	4 cut(s)	16, 49, 197, 702
Sau96I	GGNCC	2 cut(s)	23, 421
SchI	GAGTC	2 cut(s)	14, 138
ScrFI	CCNGG	1 cut(s)	21
SduI	GDGCHC	1 cut(s)	670
SetI	ASST	9 cut(s)	154, 254, 355, 426, 447, 528, 622, 670, 746
SfaNI	GCATC	2 cut(s)	117, 475
SfcI	CTRYAG	1 cut(s)	661
SinI	GGWCC	2 cut(s)	23, 421
SmiMI	CAYNNNNRTG	2 cut(s)	125, 516
SmlI	CTYRAG	3 cut(s)	131, 308, 693
SmoI	CTYRAG	3 cut(s)	131, 308, 693
Sse9I	AATT	3 cut(s)	210, 223, 448
SsiI	CCGC	1 cut(s)	596
SspI	AATATT	1 cut(s)	552
SspMI	CTAG	1 cut(s)	471
SstI	GAGCTC	1 cut(s)	670
StyD4I	CCNGG	1 cut(s)	19
TaqI	TCGA	2 cut(s)	125, 342
TasI	AATT	3 cut(s)	210, 223, 448
TatI	WGTACW	2 cut(s)	40, 545
Tru1I	TTAA	2 cut(s)	186, 687
Tru9I	TTAA	2 cut(s)	186, 687
TscAI	CASTG	2 cut(s)	571, 712
TseFI	GTSAC	2 cut(s)	6, 110
TseI	GCWGC	2 cut(s)	641, 644
Tsp45I	GTSAC	2 cut(s)	6, 110
TspDTI	ATGAA	2 cut(s)	266, 455
TspRI	CASTG	2 cut(s)	571, 712
Van91I	CCANNNNNTGG	1 cut(s)	344
VpaK11BI	GGWCC	2 cut(s)	23, 421
XbaI	TCTAGA	1 cut(s)	470
XspI	CTAG	1 cut(s)	471
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.