Rw5G032510

Serine threonine-protein phosphatase 7 long form homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0003095
Physical Location & Seq
Forward (+)
55100956 .. 55104102
3147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G032510.1

Sequence Viewer

Length: 1605 bp
ATGGGGTCAATTATAGATCCCGGACCAATTGATAAGTCTGTGCTTTATGATCAAGAGAATCATATCTCTTCAACAATTTGGGAGGGGCAGGAGCGTAGTGTGCTTAGATGTCATGAACACACGTCAATGCTTGAACAATGGAAGCTCACACCTAAACAAATCGAGTTAGTTGAGAAGGCTGGTTTTGGATACTTCAGAATGATTCCAACAATTAGCCTTGACAATGCACTTATCTCGGCGCTTGTTGAGAGGTGGAGGAAGGAGACAAATACATTTCATTTGCCTGTTGGAGAAATGACCATAACACTTGAAGATGTTGCACTCATACTTGGGCTACCAATTGATGGAAAACCTGTTATGGGGGTAACAAGGCCACTTGGAAAAGTGTGTGAAAATTTACTCGGCAAAGTACCAGAGGACCTAACTGGTGGAATGTTGAAGCTAACTTGGTTGAAAGAGAGCTTTTCTAAATGTCCTGAAGATGCACCAGTCGAAGATATTGAGCATCATACTCGTGCTTATCTACTATATCTTGTTGGTTGCACTATATTTTCTACAACAACTGGGAATAAAGTCTCTGCCATGTATCTCCCATTGTTTAAGAATTTTGATGAAGCTGGAAAATTTGCATGGGGTGCTGCAGCTTTGGCATTTCTCTATAGAGCTCTTGGAAATGCCTCCCTTAAATCACAAAGTACCATAAGCGGTTCTTTGACACTCTTGCAGTGTTGGAGTTATTATCGCCTCAATGTTGGCAATCCTAAGTTCAATCAGGAGCCAAATGATGGTTTCTTTCCATTTGCGCTTCGGTGGAAAGGTAGAGCTACTGGACCAAGATCAAACAGTAATATTGTTACCTACCGCAAGGCCTTGGATTCCCTTCAACTTTCAGATGTTAAGTGGCTCCCATACAGAGATTTGGATTATTCACCAGAAATGGAAGATTTTAAAGAGAGTTTGATATTACGGGCATCAGAAACTGTGCTTATATGCTTTGACAAGGCTGAGAGACACCTTCCGGATCGTTGCCTTAGGCAGTTTGGTATGCTTCAACCGATACCCAAGGATGTACAGCGATGGGAGAGGAAGATTCGGTTTTCTGATCAGGGGTTAGACGTGACAAAGGAAACGATTTTGCAGCTTAAAGGGAAGAATCAAGCAGAGCTGAAGGAATGGATGGATCGGCGACTTCATATCATCAAAGATGAGGAAAGTGTGGATGAAAGCATGTACATGGAGTGGTACGAGAGAATTACTCGGAAGTTTGTGGGGAGGCCTGAATCTTTAGAATCTGAGTTTCAGAGAATAGTTACTGCTATGAGAGAAATTGCAGATATAGCTGATTCATTGTTGAAAGATGAGATGGGTTTCCAAGATAGGCAATCCCTCAATGAGATCAAGAACACAGCACTTAGTAGTCTGATGGATGTGGTTGAAGACTCAAAGAGCAGTAGACGTAAGATAGCCACAAAACGTAAAAGGGAAGATGATCCAAGTCCAACTATTAGCAAGGAGGCAGCACTTGATCAAAAACAACCAGGAAATCATCAATCACACAACAATATTAGATCAGAATTCAAGGGAACAAAAGACAAACTATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

534

Amino Acids

61.22

Weight (kDa)

6.42

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 61 - 416 8e-104 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 344, 785
AccI GTMKAC 1 cut(s) 1453
AccIII TCCGGA 1 cut(s) 1018
AciI CCGC 2 cut(s) 705, 862
AclWI GGATC 4 cut(s) 11, 1029, 1188, 1484
AcsI RAATTY 4 cut(s) 394, 604, 623, 1574
AcuI CTGAAG 3 cut(s) 178, 498, 1187
AfaI GTAC 5 cut(s) 411, 697, 1071, 1232, 1244
AfiI CCNNNNNNNGG 3 cut(s) 344, 359, 785
AflIII ACRYGT 1 cut(s) 120
AjiI CACGTC 2 cut(s) 123, 1117
AjnI CCWGG 1 cut(s) 1537
Alw21I GWGCWC 1 cut(s) 667
Alw26I GTCTC 3 cut(s) 257, 580, 1003
AlwI GGATC 4 cut(s) 11, 1029, 1188, 1484
AlwNI CAGNNNCTG 1 cut(s) 980
Aor13HI TCCGGA 1 cut(s) 1018
AoxI GGCC 3 cut(s) 371, 867, 1274
ApeKI GCWGC 4 cut(s) 638, 641, 1138, 1517
ApoI RAATTY 4 cut(s) 394, 604, 623, 1574
AspLEI GCGC 2 cut(s) 241, 805
AspS9I GGNCC 3 cut(s) 23, 418, 830
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 921
AvaII GGWCC 3 cut(s) 23, 418, 830
AxyI CCTNAGG 1 cut(s) 1031
BanII GRGCYC 1 cut(s) 667
BauI CACGAG 1 cut(s) 513
BbsI GAAGAC 1 cut(s) 1443
Bbv12I GWGCWC 1 cut(s) 667
BbvI GCAGC 4 cut(s) 625, 653, 1150, 1529
BccI CCATC 6 cut(s) 338, 779, 1071, 1171, 1357, 1417
BcgI CGANNNNNNTGC 4 cut(s) 216, 250, 494, 528
BciT130I CCWGG 1 cut(s) 1539
BciVI GTATCC 1 cut(s) 182
BclI TGATCA 3 cut(s) 49, 1102, 1525
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 3 cut(s) 257, 580, 1003
BfmI CTRYAG 2 cut(s) 639, 658
BfoI RGCGCY 1 cut(s) 242
BfuI GTATCC 1 cut(s) 182
BisI GCNGC 4 cut(s) 639, 642, 1139, 1518
BlsI GCNGC 4 cut(s) 640, 643, 1140, 1519
Bme1390I CCNGG 2 cut(s) 21, 1539
Bme18I GGWCC 3 cut(s) 23, 418, 830
BmgBI CACGTC 2 cut(s) 123, 1117
BmgT120I GGNCC 3 cut(s) 23, 418, 830
BmiI GGNNCC 2 cut(s) 777, 905
BmrFI CCNGG 2 cut(s) 21, 1539
BmrI ACTGGG 1 cut(s) 573
BmsI GCATC 3 cut(s) 472, 514, 980
BmuI ACTGGG 1 cut(s) 573
BpiI GAAGAC 1 cut(s) 1443
BplI GAGNNNNNCTC 2 cut(s) 1240, 1272
BpuMI CCSGG 1 cut(s) 21
BsaJI CCNNGG 2 cut(s) 870, 1062
BsaWI WCCGGW 1 cut(s) 1018
Bsc4I CCNNNNNNNGG 3 cut(s) 344, 359, 785
Bse1I ACTGG 4 cut(s) 430, 488, 568, 832
Bse21I CCTNAGG 1 cut(s) 1031
BseAI TCCGGA 1 cut(s) 1018
BseBI CCWGG 1 cut(s) 1539
BseDI CCNNGG 2 cut(s) 870, 1062
BseGI GGATG 4 cut(s) 1072, 1182, 1225, 1432
BseLI CCNNNNNNNGG 3 cut(s) 344, 359, 785
BseMII CTCAG 2 cut(s) 996, 1284
BseNI ACTGG 4 cut(s) 430, 488, 568, 832
BseXI GCAGC 4 cut(s) 625, 653, 1150, 1529
BshFI GGCC 3 cut(s) 373, 869, 1276
BsiHKAI GWGCWC 1 cut(s) 667
BsiSI CCGG 2 cut(s) 21, 1019
BslI CCNNNNNNNGG 3 cut(s) 344, 359, 785
BsmAI GTCTC 3 cut(s) 257, 580, 1003
BsnI GGCC 3 cut(s) 373, 869, 1276
Bsp1286I GDGCHC 1 cut(s) 667
Bsp13I TCCGGA 1 cut(s) 1018
Bsp1407I TGTACA 2 cut(s) 1069, 1230
BspACI CCGC 2 cut(s) 705, 862
BspANI GGCC 3 cut(s) 373, 869, 1276
BspCNI CTCAG 2 cut(s) 997, 1285
BspEI TCCGGA 1 cut(s) 1018
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 2 cut(s) 777, 905
BspMAI CTGCAG 1 cut(s) 643
BspPI GGATC 4 cut(s) 11, 1029, 1188, 1484
BsrGI TGTACA 2 cut(s) 1069, 1230
BsrI ACTGG 4 cut(s) 430, 488, 568, 832
BssECI CCNNGG 2 cut(s) 870, 1062
BssSI CACGAG 1 cut(s) 513
BssT1I CCWWGG 2 cut(s) 870, 1062
Bst2BI CACGAG 1 cut(s) 513
Bst2UI CCWGG 1 cut(s) 1539
Bst4CI ACNGT 2 cut(s) 845, 982
Bst6I CTCTTC 1 cut(s) 73
BstAPI GCANNNNNTGC 1 cut(s) 635
BstAUI TGTACA 2 cut(s) 1069, 1230
BstDEI CTNAG 6 cut(s) 104, 762, 1005, 1031, 1293, 1412
BstF5I GGATG 4 cut(s) 1072, 1182, 1225, 1432
BstH2I RGCGCY 1 cut(s) 242
BstHHI GCGC 2 cut(s) 241, 805
BstMAI GTCTC 3 cut(s) 257, 580, 1003
BstMWI GCNNNNNNNGC 4 cut(s) 100, 635, 647, 1337
BstNI CCWGG 1 cut(s) 1539
BstNSI RCATGY 1 cut(s) 1231
BstSCI CCNGG 2 cut(s) 19, 1537
BstSFI CTRYAG 2 cut(s) 639, 658
BstV1I GCAGC 4 cut(s) 625, 653, 1150, 1529
BstV2I GAAGAC 1 cut(s) 1443
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
Bsu36I CCTNAGG 1 cut(s) 1031
BsuI GTATCC 1 cut(s) 182
BsuRI GGCC 3 cut(s) 373, 869, 1276
BtgZI GCGATG 1 cut(s) 1090
BtrI CACGTC 2 cut(s) 123, 1117
BtsCI GGATG 4 cut(s) 1072, 1182, 1225, 1432
BtsI GCAGTG 1 cut(s) 731
BtsIMutI CAGTG 1 cut(s) 731
CaiI CAGNNNCTG 1 cut(s) 980
CciI TCATGA 1 cut(s) 112
CfoI GCGC 2 cut(s) 241, 805
Cfr13I GGNCC 3 cut(s) 23, 418, 830
Csp6I GTAC 5 cut(s) 410, 696, 1070, 1231, 1243
CviAII CATG 5 cut(s) 113, 583, 630, 1228, 1234
CviQI GTAC 5 cut(s) 410, 696, 1070, 1231, 1243
DdeI CTNAG 6 cut(s) 104, 762, 1005, 1031, 1293, 1412
DraI TTTAAA 1 cut(s) 949
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
Ecl136II GAGCTC 1 cut(s) 665
Eco130I CCWWGG 2 cut(s) 870, 1062
Eco147I AGGCCT 2 cut(s) 869, 1276
Eco24I GRGCYC 1 cut(s) 667
Eco47I GGWCC 3 cut(s) 23, 418, 830
Eco53kI GAGCTC 1 cut(s) 665
Eco57I CTGAAG 3 cut(s) 178, 498, 1187
Eco81I CCTNAGG 1 cut(s) 1031
EcoICRI GAGCTC 1 cut(s) 665
EcoO109I RGGNCCY 1 cut(s) 418
EcoRI GAATTC 1 cut(s) 1574
EcoRII CCWGG 1 cut(s) 1537
EcoT14I CCWWGG 2 cut(s) 870, 1062
EcoT38I GRGCYC 1 cut(s) 667
ErhI CCWWGG 2 cut(s) 870, 1062
FaeI CATG 5 cut(s) 116, 586, 633, 1231, 1237
FalI AAGNNNNNCTT 2 cut(s) 694, 726
FatI CATG 5 cut(s) 112, 582, 629, 1227, 1233
FbaI TGATCA 3 cut(s) 49, 1102, 1525
FblI GTMKAC 1 cut(s) 1453
Fnu4HI GCNGC 4 cut(s) 639, 642, 1139, 1518
FokI GGATG 4 cut(s) 1079, 1189, 1232, 1439
FriOI GRGCYC 1 cut(s) 667
Fsp4HI GCNGC 4 cut(s) 639, 642, 1139, 1518
GlaI GCGC 2 cut(s) 240, 804
GluI GCNGC 4 cut(s) 639, 642, 1139, 1518
HaeII RGCGCY 1 cut(s) 242
HaeIII GGCC 3 cut(s) 373, 869, 1276
HapII CCGG 2 cut(s) 21, 1019
HhaI GCGC 2 cut(s) 241, 805
Hin1II CATG 5 cut(s) 116, 586, 633, 1231, 1237
Hin6I GCGC 2 cut(s) 239, 803
HinP1I GCGC 2 cut(s) 239, 803
HinfI GANTC 9 cut(s) 58, 202, 875, 1090, 1153, 1280, 1289, 1343, 1439
HpaII CCGG 2 cut(s) 21, 1019
HphI GGTGA 1 cut(s) 921
Hpy166II GTNNAC 1 cut(s) 1454
Hpy188I TCNGA 9 cut(s) 197, 892, 976, 1102, 1260, 1294, 1302, 1422, 1573
Hpy188III TCNNGA 6 cut(s) 53, 113, 476, 773, 1019, 1399
Hpy8I GTNNAC 1 cut(s) 1454
HpyAV CCTTC 5 cut(s) 169, 253, 890, 1025, 1162
HpyCH4III ACNGT 2 cut(s) 845, 982
HpyCH4IV ACGT 4 cut(s) 122, 1116, 1456, 1474
HpyCH4V TGCA 9 cut(s) 227, 320, 485, 543, 629, 641, 724, 1138, 1331
HpyF10VI GCNNNNNNNGC 4 cut(s) 100, 635, 647, 1337
HpyF3I CTNAG 6 cut(s) 104, 762, 1005, 1031, 1293, 1412
HpySE526I ACGT 4 cut(s) 122, 1116, 1456, 1474
Hsp92II CATG 5 cut(s) 116, 586, 633, 1231, 1237
HspAI GCGC 2 cut(s) 239, 803
Kpn2I TCCGGA 1 cut(s) 1018
Ksp22I TGATCA 3 cut(s) 49, 1102, 1525
LmnI GCTCC 3 cut(s) 91, 775, 909
Lsp1109I GCAGC 4 cut(s) 625, 653, 1150, 1529
LweI GCATC 3 cut(s) 472, 514, 980
MaeII ACGT 4 cut(s) 122, 1116, 1456, 1474
MaeIII GTNAC 4 cut(s) 364, 853, 1117, 1309
MboII GAAGA 9 cut(s) 60, 323, 491, 506, 953, 1099, 1162, 1448, 1496
MfeI CAATTG 2 cut(s) 27, 339
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 667
MlyI GAGTC 1 cut(s) 1433
MmeI TCCRAC 4 cut(s) 230, 268, 710, 1523
MroI TCCGGA 1 cut(s) 1018
MseI TTAA 5 cut(s) 600, 684, 897, 948, 1143
MslI CAYNNNNRTG 3 cut(s) 125, 513, 1232
MspI CCGG 2 cut(s) 21, 1019
MspR9I CCNGG 2 cut(s) 21, 1539
MunI CAATTG 2 cut(s) 27, 339
MvaI CCWGG 1 cut(s) 1539
MwoI GCNNNNNNNGC 4 cut(s) 100, 635, 647, 1337
NciI CCSGG 1 cut(s) 21
NlaIII CATG 5 cut(s) 116, 586, 633, 1231, 1237
NlaIV GGNNCC 2 cut(s) 777, 905
NmeAIII GCCGAG 2 cut(s) 215, 381
NmuCI GTSAC 1 cut(s) 1117
NspI RCATGY 1 cut(s) 1231
PagI TCATGA 1 cut(s) 112
PceI AGGCCT 2 cut(s) 869, 1276
PfeI GAWTC 8 cut(s) 58, 202, 875, 1090, 1153, 1280, 1289, 1343
PflMI CCANNNNNTGG 2 cut(s) 344, 785
PfoI TCCNGGA 1 cut(s) 19
PkrI GCNGC 4 cut(s) 640, 643, 1140, 1519
PleI GAGTC 1 cut(s) 1433
PpsI GAGTC 1 cut(s) 1433
PpuMI RGGWCCY 1 cut(s) 418
Psp124BI GAGCTC 1 cut(s) 667
Psp5II RGGWCCY 1 cut(s) 418
Psp6I CCWGG 1 cut(s) 1537
PspGI CCWGG 1 cut(s) 1537
PspN4I GGNNCC 2 cut(s) 777, 905
PspPI GGNCC 3 cut(s) 23, 418, 830
PspPPI RGGWCCY 1 cut(s) 418
PstI CTGCAG 1 cut(s) 643
PstNI CAGNNNCTG 1 cut(s) 980
PsuI RGATCY 1 cut(s) 16
RsaI GTAC 5 cut(s) 411, 697, 1071, 1232, 1244
RsaNI GTAC 5 cut(s) 410, 696, 1070, 1231, 1243
RseI CAYNNNNRTG 3 cut(s) 125, 513, 1232
SacI GAGCTC 1 cut(s) 667
SaqAI TTAA 5 cut(s) 600, 684, 897, 948, 1143
SatI GCNGC 4 cut(s) 639, 642, 1139, 1518
Sau96I GGNCC 3 cut(s) 23, 418, 830
SchI GAGTC 1 cut(s) 1433
ScrFI CCNGG 2 cut(s) 21, 1539
SduI GDGCHC 1 cut(s) 667
SfaNI GCATC 3 cut(s) 472, 514, 980
SfcI CTRYAG 2 cut(s) 639, 658
SinI GGWCC 3 cut(s) 23, 418, 830
SmiMI CAYNNNNRTG 3 cut(s) 125, 513, 1232
SseBI AGGCCT 2 cut(s) 869, 1276
SsiI CCGC 2 cut(s) 705, 862
SspI AATATT 2 cut(s) 850, 1564
SstI GAGCTC 1 cut(s) 667
StuI AGGCCT 2 cut(s) 869, 1276
StyD4I CCNGG 2 cut(s) 19, 1537
StyI CCWWGG 2 cut(s) 870, 1062
TaaI ACNGT 2 cut(s) 845, 982
TaiI ACGT 4 cut(s) 125, 1119, 1459, 1477
TaqI TCGA 2 cut(s) 162, 492
TatI WGTACW 2 cut(s) 1069, 1230
TfiI GAWTC 8 cut(s) 58, 202, 875, 1090, 1153, 1280, 1289, 1343
Tru1I TTAA 5 cut(s) 600, 684, 897, 948, 1143
Tru9I TTAA 5 cut(s) 600, 684, 897, 948, 1143
TscAI CASTG 1 cut(s) 731
TseFI GTSAC 1 cut(s) 1117
TseI GCWGC 4 cut(s) 638, 641, 1138, 1517
Tsp45I GTSAC 1 cut(s) 1117
TspDTI ATGAA 6 cut(s) 129, 266, 627, 1181, 1236, 1335
TspRI CASTG 1 cut(s) 731
Van91I CCANNNNNTGG 2 cut(s) 344, 785
VpaK11BI GGWCC 3 cut(s) 23, 418, 830
XapI RAATTY 4 cut(s) 394, 604, 623, 1574
XceI RCATGY 1 cut(s) 1231
XmiI GTMKAC 1 cut(s) 1453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.