Rh2BG443700

Serine threonine-protein phosphatase 7 long form homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003095
Physical Location & Seq
Forward (+)
62813934 .. 62817508
3575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG443700.1

Sequence Viewer

Length: 1371 bp
ATGCTTGAGCACTGGAAACTCACGCCTAAACAAATTGAGTTGGTGGAGAAGGCTGGATTTGGGTACTTCAGATCAATTCCGACAATTATTCTTGACAATTCACTTATCTCGGCCCTTGTTGAGAGGTGGAGGAGGGAAACAAATACGTTTCATTTACCTGTTGGAGAAATGAGTATAACACTTGAAGATGTTGCACTTATATTGGGGCTACCAGTTGACGGAAATCCTGTTATAGGCCCTACAGTGAGGACACCCAGCATAGTGTGTGAACAGTTACTGGGGAAAGTACCAAAGGACCTAAATGGGGGAATGTTGAAGCTAAATTGGTTGAGAGAATTCTTTTCCAAATGTCCTGACGATGCATCAGTTGAAGAGACGGCGCGCCATACACGGGCTTACCTCCTATATCTTGTGGGATGTACAATATTTTCCACAACTACTGGGAATAAAGTCTCTGTTTCATTTCTCACACTATTTGAGAATTTTGATGAAGCTGGAAGATTTGCATGGGGTGCAGCAGCATTGGCGTTCCTCTATAGAGCTCTTGGTAATGCCTCCCTTAAATCTCAAGGCACAATTAGTGGCTCTTTGACACTACTGCAGTGTTGGAGTTATTATCATCTGAATGTTGGCCAACCAAAGTTCAATGAAGAGCCAAACCAGGGTTGTTTTCCATTTGCTCTTAGGTGGAAAGGACGATCTAGTGGAACAAGATCGAAAACTAACATAATTGCCTACCGCAAGGCCTTGGATTCCCTTCAACATTATGATGTTAAGTGGTATCCATACAAAGATTTGGATTCTACAGTTATACCCGAAGATATAAACAGTAATCTAATTTTACGGACATCAAAAACTATGTTGATATGCTTTGGTAAGGCAGAAAGGCACCTCCCTGATCGTTGCCTTAGGCAGTTTGGCATGCTTCAACCTATCCCAGAGCATCCTCAGAAATGGGAGAGGAAGATTCCTGCTCTTGATCAGGGATTAGACTTTTCAAAGGAGATGGAGGTGGAACTGAAAGGGAAAATACGCTCAGAAATTAGGGAATGGTTAGAGCGTGGTTTCTATATTCTGGAAGACGAGGAAGGTGTGGATGAAAGCGAGTACATGGAGTGGTATGAGAATATTACTCGTAAATATGTTGGAAGGCCTGAATCTTTAGAATCCGAGTTTCAGAGAATGGTTAGTGCTATGAGAGACATAGAAAATATAGCTGATTCATTGCCAATGGCAGAGATGGTTTCCCAAGATAGGAAGTTGCTTGCTGAAGTCAAAAGCACATTGCAAACATGTTTTAATGATGTCGTTGGAAATTCAAAAAAGGGTAGGTGTAAGAATGCTGTAAAGCGTAAGAGGGAGGGAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

456

Amino Acids

52.08

Weight (kDa)

7.05

Isoelectric Point (pI)

46.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 19 - 375 2.8e-100 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 888
AccII CGCG 1 cut(s) 382
AciI CCGC 1 cut(s) 739
AcoI YGGCCR 1 cut(s) 631
AcsI RAATTY 3 cut(s) 335, 481, 1315
AcuI CTGAAG 2 cut(s) 52, 1290
AfaI GTAC 4 cut(s) 65, 288, 421, 1109
AfiI CCNNNNNNNGG 6 cut(s) 218, 233, 304, 391, 662, 1254
AflIII ACRYGT 1 cut(s) 1292
AgsI TTSAA 8 cut(s) 185, 316, 371, 646, 761, 929, 999, 1320
AjnI CCWGG 1 cut(s) 660
AluBI AGCT 4 cut(s) 319, 494, 542, 1217
AluI AGCT 4 cut(s) 319, 494, 542, 1217
Alw21I GWGCWC 2 cut(s) 12, 544
Alw26I GTCTC 3 cut(s) 368, 457, 1194
AlwNI CAGNNNCTG 1 cut(s) 277
AoxI GGCC 5 cut(s) 111, 235, 631, 744, 1151
ApeKI GCWGC 2 cut(s) 515, 518
ApoI RAATTY 3 cut(s) 335, 481, 1315
AscI GGCGCGCC 1 cut(s) 380
AspLEI GCGC 2 cut(s) 382, 384
AspS9I GGNCC 3 cut(s) 112, 236, 295
AvaII GGWCC 1 cut(s) 295
AxyI CCTNAGG 1 cut(s) 908
BalI TGGCCA 1 cut(s) 633
BanI GGYRCC 1 cut(s) 888
BanII GRGCYC 1 cut(s) 544
BbsI GAAGAC 1 cut(s) 1086
Bbv12I GWGCWC 2 cut(s) 12, 544
BbvI GCAGC 2 cut(s) 527, 530
BccI CCATC 2 cut(s) 1000, 1234
BceAI ACGGC 1 cut(s) 393
BciT130I CCWGG 1 cut(s) 662
BciVI GTATCC 1 cut(s) 792
BclI TGATCA 1 cut(s) 979
BcoDI GTCTC 3 cut(s) 368, 457, 1194
BfaI CTAG 1 cut(s) 702
BfmI CTRYAG 4 cut(s) 240, 535, 599, 804
BfuI GTATCC 1 cut(s) 792
BisI GCNGC 2 cut(s) 516, 519
BlsI GCNGC 2 cut(s) 517, 520
Bme1390I CCNGG 1 cut(s) 662
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 3 cut(s) 112, 236, 295
BmiI GGNNCC 1 cut(s) 890
BmrFI CCNGG 1 cut(s) 662
BmrI ACTGGG 2 cut(s) 287, 450
BmsI GCATC 3 cut(s) 349, 371, 952
BmuI ACTGGG 2 cut(s) 287, 450
BpiI GAAGAC 1 cut(s) 1086
BpuEI CTTGAG 2 cut(s) 26, 552
BsaJI CCNNGG 2 cut(s) 661, 747
Bsc4I CCNNNNNNNGG 6 cut(s) 218, 233, 304, 391, 662, 1254
Bse1I ACTGG 4 cut(s) 17, 212, 282, 445
Bse21I CCTNAGG 1 cut(s) 908
Bse3DI GCAATG 2 cut(s) 1223, 1283
BseBI CCWGG 1 cut(s) 662
BseDI CCNNGG 2 cut(s) 661, 747
BseGI GGATG 3 cut(s) 422, 943, 1102
BseLI CCNNNNNNNGG 6 cut(s) 218, 233, 304, 391, 662, 1254
BseMI GCAATG 2 cut(s) 1223, 1283
BseMII CTCAG 2 cut(s) 962, 1050
BseNI ACTGG 4 cut(s) 17, 212, 282, 445
BsePI GCGCGC 1 cut(s) 380
BseRI GAGGAG 1 cut(s) 145
BseXI GCAGC 2 cut(s) 527, 530
BseYI CCCAGC 1 cut(s) 254
BsgI GTGCAG 1 cut(s) 534
Bsh1236I CGCG 1 cut(s) 382
BshFI GGCC 5 cut(s) 113, 237, 633, 746, 1153
BshNI GGYRCC 1 cut(s) 888
BsiHKAI GWGCWC 2 cut(s) 12, 544
BslI CCNNNNNNNGG 6 cut(s) 218, 233, 304, 391, 662, 1254
BsmAI GTCTC 3 cut(s) 368, 457, 1194
BsmBI CGTCTC 1 cut(s) 368
BsmI GAATGC 1 cut(s) 1345
BsnI GGCC 5 cut(s) 113, 237, 633, 746, 1153
Bsp1286I GDGCHC 2 cut(s) 12, 544
Bsp1407I TGTACA 1 cut(s) 419
Bsp143I GATC 5 cut(s) 71, 698, 713, 898, 979
BspACI CCGC 1 cut(s) 739
BspANI GGCC 5 cut(s) 113, 237, 633, 746, 1153
BspCNI CTCAG 2 cut(s) 961, 1049
BspFNI CGCG 1 cut(s) 382
BspLI GGNNCC 1 cut(s) 890
BspMAI CTGCAG 1 cut(s) 603
BspQI GCTCTTC 1 cut(s) 645
BspT107I GGYRCC 1 cut(s) 888
BsrDI GCAATG 2 cut(s) 1223, 1283
BsrGI TGTACA 1 cut(s) 419
BsrI ACTGG 4 cut(s) 17, 212, 282, 445
BssECI CCNNGG 2 cut(s) 661, 747
BssHII GCGCGC 1 cut(s) 380
BssMI GATC 5 cut(s) 71, 698, 713, 898, 979
BssT1I CCWWGG 1 cut(s) 747
Bst2UI CCWGG 1 cut(s) 662
Bst4CI ACNGT 4 cut(s) 244, 273, 808, 830
Bst6I CTCTTC 2 cut(s) 366, 645
BstAPI GCANNNNNTGC 1 cut(s) 512
BstAUI TGTACA 1 cut(s) 419
BstC8I GCNNGC 3 cut(s) 382, 923, 1266
BstDEI CTNAG 4 cut(s) 683, 908, 948, 1036
BstENI CCTNNNNNAGG 1 cut(s) 231
BstF5I GGATG 3 cut(s) 422, 943, 1102
BstFNI CGCG 1 cut(s) 382
BstHHI GCGC 2 cut(s) 382, 384
BstKTI GATC 5 cut(s) 74, 701, 716, 901, 982
BstMAI GTCTC 3 cut(s) 368, 457, 1194
BstMBI GATC 5 cut(s) 71, 698, 713, 898, 979
BstMWI GCNNNNNNNGC 2 cut(s) 512, 524
BstNI CCWGG 1 cut(s) 662
BstNSI RCATGY 2 cut(s) 925, 1296
BstSCI CCNGG 1 cut(s) 660
BstSFI CTRYAG 4 cut(s) 240, 535, 599, 804
BstUI CGCG 1 cut(s) 382
BstV1I GCAGC 2 cut(s) 527, 530
BstV2I GAAGAC 1 cut(s) 1086
Bsu36I CCTNAGG 1 cut(s) 908
BsuI GTATCC 1 cut(s) 792
BsuRI GGCC 5 cut(s) 113, 237, 633, 746, 1153
BtsCI GGATG 3 cut(s) 422, 943, 1102
BtsI GCAGTG 1 cut(s) 608
BtsIMutI CAGTG 3 cut(s) 10, 249, 608
Cac8I GCNNGC 3 cut(s) 382, 923, 1266
CaiI CAGNNNCTG 1 cut(s) 277
CfoI GCGC 2 cut(s) 382, 384
Cfr13I GGNCC 3 cut(s) 112, 236, 295
Csp6I GTAC 4 cut(s) 64, 287, 420, 1108
CviAII CATG 4 cut(s) 507, 922, 1111, 1293
CviQI GTAC 4 cut(s) 64, 287, 420, 1108
DdeI CTNAG 4 cut(s) 683, 908, 948, 1036
DpnI GATC 5 cut(s) 73, 700, 715, 900, 981
DpnII GATC 5 cut(s) 71, 698, 713, 898, 979
EaeI YGGCCR 1 cut(s) 631
Eam1104I CTCTTC 2 cut(s) 366, 645
EarI CTCTTC 2 cut(s) 366, 645
Ecl136II GAGCTC 1 cut(s) 542
Eco130I CCWWGG 1 cut(s) 747
Eco147I AGGCCT 2 cut(s) 746, 1153
Eco24I GRGCYC 1 cut(s) 544
Eco47I GGWCC 1 cut(s) 295
Eco53kI GAGCTC 1 cut(s) 542
Eco57I CTGAAG 2 cut(s) 52, 1290
Eco81I CCTNAGG 1 cut(s) 908
EcoICRI GAGCTC 1 cut(s) 542
EcoNI CCTNNNNNAGG 1 cut(s) 231
EcoO109I RGGNCCY 2 cut(s) 236, 295
EcoRI GAATTC 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 660
EcoT14I CCWWGG 1 cut(s) 747
EcoT22I ATGCAT 1 cut(s) 364
EcoT38I GRGCYC 1 cut(s) 544
ErhI CCWWGG 1 cut(s) 747
Esp3I CGTCTC 1 cut(s) 368
FaeI CATG 4 cut(s) 510, 925, 1114, 1296
FatI CATG 4 cut(s) 506, 921, 1110, 1292
FbaI TGATCA 1 cut(s) 979
Fnu4HI GCNGC 2 cut(s) 516, 519
FokI GGATG 3 cut(s) 429, 930, 1109
FriOI GRGCYC 1 cut(s) 544
Fsp4HI GCNGC 2 cut(s) 516, 519
FspBI CTAG 1 cut(s) 702
GlaI GCGC 2 cut(s) 381, 383
GluI GCNGC 2 cut(s) 516, 519
GsaI CCCAGC 1 cut(s) 258
HaeIII GGCC 5 cut(s) 113, 237, 633, 746, 1153
HhaI GCGC 2 cut(s) 382, 384
Hin1II CATG 4 cut(s) 510, 925, 1114, 1296
Hin6I GCGC 2 cut(s) 380, 382
HinP1I GCGC 2 cut(s) 380, 382
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 6 cut(s) 752, 800, 967, 1157, 1166, 1220
Hpy166II GTNNAC 2 cut(s) 217, 269
Hpy188I TCNGA 7 cut(s) 71, 81, 624, 951, 1039, 1171, 1179
Hpy188III TCNNGA 4 cut(s) 92, 353, 977, 1076
Hpy8I GTNNAC 2 cut(s) 217, 269
HpyAV CCTTC 4 cut(s) 43, 767, 1082, 1143
HpyCH4III ACNGT 4 cut(s) 244, 273, 808, 830
HpyCH4IV ACGT 1 cut(s) 146
HpyCH4V TGCA 6 cut(s) 194, 362, 506, 515, 601, 1288
HpyF10VI GCNNNNNNNGC 2 cut(s) 512, 524
HpyF3I CTNAG 4 cut(s) 683, 908, 948, 1036
HpySE526I ACGT 1 cut(s) 146
Hsp92II CATG 4 cut(s) 510, 925, 1114, 1296
HspAI GCGC 2 cut(s) 380, 382
Ksp22I TGATCA 1 cut(s) 979
Kzo9I GATC 5 cut(s) 71, 698, 713, 898, 979
LguI GCTCTTC 1 cut(s) 645
Lsp1109I GCAGC 2 cut(s) 527, 530
LweI GCATC 3 cut(s) 349, 371, 952
MaeI CTAG 1 cut(s) 702
MaeII ACGT 1 cut(s) 146
MaeIII GTNAC 1 cut(s) 273
MalI GATC 5 cut(s) 73, 700, 715, 900, 981
MboI GATC 5 cut(s) 71, 698, 713, 898, 979
MboII GAAGA 7 cut(s) 197, 383, 510, 662, 830, 976, 1091
MhlI GDGCHC 2 cut(s) 12, 544
MlsI TGGCCA 1 cut(s) 633
MluNI TGGCCA 1 cut(s) 633
MmeI TCCRAC 5 cut(s) 104, 142, 587, 1126, 1291
Mox20I TGGCCA 1 cut(s) 633
Mph1103I ATGCAT 1 cut(s) 364
MscI TGGCCA 1 cut(s) 633
MseI TTAA 3 cut(s) 561, 774, 1299
MslI CAYNNNNRTG 2 cut(s) 624, 768
Msp20I TGGCCA 1 cut(s) 633
MspR9I CCNGG 1 cut(s) 662
Mva1269I GAATGC 1 cut(s) 1345
MvaI CCWGG 1 cut(s) 662
MvnI CGCG 1 cut(s) 382
MwoI GCNNNNNNNGC 2 cut(s) 512, 524
NdeII GATC 5 cut(s) 71, 698, 713, 898, 979
NlaIII CATG 4 cut(s) 510, 925, 1114, 1296
NlaIV GGNNCC 1 cut(s) 890
NmeAIII GCCGAG 1 cut(s) 89
NsiI ATGCAT 1 cut(s) 364
NspI RCATGY 2 cut(s) 925, 1296
PaeI GCATGC 1 cut(s) 925
PalAI GGCGCGCC 1 cut(s) 380
PauI GCGCGC 1 cut(s) 380
PceI AGGCCT 2 cut(s) 746, 1153
PciI ACATGT 1 cut(s) 1292
PciSI GCTCTTC 1 cut(s) 645
PctI GAATGC 1 cut(s) 1345
PfeI GAWTC 6 cut(s) 752, 800, 967, 1157, 1166, 1220
PkrI GCNGC 2 cut(s) 517, 520
PpuMI RGGWCCY 1 cut(s) 295
PscI ACATGT 1 cut(s) 1292
Psp124BI GAGCTC 1 cut(s) 544
Psp5II RGGWCCY 1 cut(s) 295
Psp6I CCWGG 1 cut(s) 660
PspFI CCCAGC 1 cut(s) 254
PspGI CCWGG 1 cut(s) 660
PspN4I GGNNCC 1 cut(s) 890
PspPI GGNCC 3 cut(s) 112, 236, 295
PspPPI RGGWCCY 1 cut(s) 295
PstI CTGCAG 1 cut(s) 603
PstNI CAGNNNCTG 1 cut(s) 277
PteI GCGCGC 1 cut(s) 380
RsaI GTAC 4 cut(s) 65, 288, 421, 1109
RsaNI GTAC 4 cut(s) 64, 287, 420, 1108
RseI CAYNNNNRTG 2 cut(s) 624, 768
SacI GAGCTC 1 cut(s) 544
SapI GCTCTTC 1 cut(s) 645
SaqAI TTAA 3 cut(s) 561, 774, 1299
SatI GCNGC 2 cut(s) 516, 519
Sau3AI GATC 5 cut(s) 71, 698, 713, 898, 979
Sau96I GGNCC 3 cut(s) 112, 236, 295
ScrFI CCNGG 1 cut(s) 662
SduI GDGCHC 2 cut(s) 12, 544
SfaNI GCATC 3 cut(s) 349, 371, 952
SfcI CTRYAG 4 cut(s) 240, 535, 599, 804
SgsI GGCGCGCC 1 cut(s) 380
SinI GGWCC 1 cut(s) 295
SmiMI CAYNNNNRTG 2 cut(s) 624, 768
SmlI CTYRAG 2 cut(s) 5, 567
SmoI CTYRAG 2 cut(s) 5, 567
SphI GCATGC 1 cut(s) 925
SseBI AGGCCT 2 cut(s) 746, 1153
SsiI CCGC 1 cut(s) 739
SspI AATATT 2 cut(s) 426, 1129
SspMI CTAG 1 cut(s) 702
SstI GAGCTC 1 cut(s) 544
StuI AGGCCT 2 cut(s) 746, 1153
StyD4I CCNGG 1 cut(s) 660
StyI CCWWGG 1 cut(s) 747
TaaI ACNGT 4 cut(s) 244, 273, 808, 830
TaiI ACGT 1 cut(s) 149
TaqI TCGA 1 cut(s) 716
TatI WGTACW 2 cut(s) 419, 1107
TfiI GAWTC 6 cut(s) 752, 800, 967, 1157, 1166, 1220
Tru1I TTAA 3 cut(s) 561, 774, 1299
Tru9I TTAA 3 cut(s) 561, 774, 1299
TscAI CASTG 3 cut(s) 17, 249, 608
TseI GCWGC 2 cut(s) 515, 518
TspDTI ATGAA 6 cut(s) 140, 450, 504, 663, 1113, 1212
TspGWI ACGGA 2 cut(s) 234, 859
TspRI CASTG 3 cut(s) 17, 249, 608
VpaK11BI GGWCC 1 cut(s) 295
XagI CCTNNNNNAGG 1 cut(s) 231
XapI RAATTY 3 cut(s) 335, 481, 1315
XceI RCATGY 2 cut(s) 925, 1296
XspI CTAG 1 cut(s) 702
Zsp2I ATGCAT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.