AT5G18110

Belongs to the eukaryotic initiation factor 4E family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016574
Physical Location & Seq
Reverse (-)
5988744 .. 5990681
1938 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G18110.1

Sequence Viewer

Length: 666 bp
ATGGAGGTTTTGGATAGGAGAGACGATGAGATCAGGGACTCGGGAAACATGGACAGCATCAAGTCACACTATGTTACCGACTCTGTTTCCGAGGAACGCCGCTCTCGTGAGCTCAAGGATGGAGACCATCCTTTACGGTACAAGTTTTCGATATGGTACACTCGTCGCACACCAGGGGTTCGGAACCAGTCTTATGAAGATAACATCAAGAAGATGGTAGAATTCAGCACGGTTGAAGGATTTTGGGCCTGCTACTGTCACCTTGCTCGTTCTTCTCTCTTGCCTAGTCCAACAGATCTTCATTTCTTTAAGGATGGGATTCGTCCATTGTGGGAGGATGGTGCCAACTGCAATGGAGGAAAGTGGATCATACGTTTCTCAAAAGTTGTATCTGCTCGCTTCTGGGAGGATCTGCTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGGGCAGTACTGAGTGTCCGTTTCAACGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAGGCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTGAAGTTGCCTCATGCATATGTCATGGAATACAAGCCACACGATGCTTCTCTCCGCGACAACTCTTCCTACAGAAACACATGGCTGAGAGGATAG

Protein Analysis

221

Amino Acids

25.74

Weight (kDa)

6.45

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IF4E PF01652 44 - 201 1.6e-53 Eukaryotic initiation factor 4E
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016574)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18110
fragaria_vesca FvH4_1g28260
malus_domestica MD12G1004900.v1.1 MD14G1003400.v1.1
prunus_persica Prupe.7G005900_v2.0.a1
pyrus_communis pycom12g00400 pycom14g00140
rosa_chinensis RchiOBHm_Chr3g0496901
rosa_laevigata RLG00000022491
rosa_roxburghii Rroxscaffold_6G00388600
rosa_rugosa Rorug03G0288400
rosa_samantha Rh3AG332300 Rh3DG368300
rosa_wichuraiana Rw3G029190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 341
AccBSI CCGCTC 1 cut(s) 102
AccII CGCG 1 cut(s) 627
AciI CCGC 3 cut(s) 100, 565, 625
AclWI GGATC 2 cut(s) 374, 417
AcsI RAATTY 1 cut(s) 221
AfaI GTAC 3 cut(s) 140, 158, 471
AgsI TTSAA 3 cut(s) 236, 487, 574
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 2 cut(s) 112, 439
AluI AGCT 2 cut(s) 112, 439
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 3 cut(s) 15, 117, 546
AlwI GGATC 2 cut(s) 374, 417
Ama87I CYCGRG 1 cut(s) 40
AoxI GGCC 1 cut(s) 246
ApoI RAATTY 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 246
AsuHPI GGTGA 1 cut(s) 251
AvaI CYCGRG 1 cut(s) 40
BaeI ACNNNNGTAYC 2 cut(s) 148, 181
BanI GGYRCC 1 cut(s) 341
BanII GRGCYC 1 cut(s) 114
BauI CACGAG 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 114
BccI CCATC 7 cut(s) 113, 135, 208, 308, 332, 535, 537
BciT130I CCWGG 1 cut(s) 174
BcoDI GTCTC 3 cut(s) 15, 117, 546
BfaI CTAG 1 cut(s) 285
BfmI CTRYAG 1 cut(s) 640
BglII AGATCT 1 cut(s) 295
BisI GCNGC 2 cut(s) 100, 566
BlsI GCNGC 2 cut(s) 101, 567
BmcAI AGTACT 1 cut(s) 471
Bme1390I CCNGG 1 cut(s) 174
BmeT110I CYCGRG 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 246
BmiI GGNNCC 2 cut(s) 185, 343
BmrFI CCNGG 1 cut(s) 174
BmsI GCATC 3 cut(s) 66, 436, 604
BpuEI CTTGAG 1 cut(s) 98
BsaI GGTCTC 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 90, 173
Bse1I ACTGG 1 cut(s) 187
Bse3DI GCAATG 2 cut(s) 358, 523
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 2 cut(s) 90, 173
BseGI GGATG 4 cut(s) 124, 127, 319, 343
BseMI GCAATG 2 cut(s) 358, 523
BseMII CTCAG 2 cut(s) 464, 647
BseNI ACTGG 1 cut(s) 187
Bsh1236I CGCG 1 cut(s) 627
BshFI GGCC 1 cut(s) 248
BshNI GGYRCC 1 cut(s) 341
BsiHKAI GWGCWC 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 40
BslFI GGGAC 1 cut(s) 50
BsmAI GTCTC 3 cut(s) 15, 117, 546
BsmBI CGTCTC 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 1 cut(s) 248
Bso31I GGTCTC 1 cut(s) 117
BsoBI CYCGRG 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 4 cut(s) 30, 295, 366, 409
BspACI CCGC 3 cut(s) 100, 565, 625
BspANI GGCC 1 cut(s) 248
BspCNI CTCAG 2 cut(s) 465, 648
BspFNI CGCG 1 cut(s) 627
BspLI GGNNCC 2 cut(s) 185, 343
BspPI GGATC 2 cut(s) 374, 417
BspT107I GGYRCC 1 cut(s) 341
BspTNI GGTCTC 1 cut(s) 117
BsrBI CCGCTC 1 cut(s) 102
BsrDI GCAATG 2 cut(s) 358, 523
BsrI ACTGG 1 cut(s) 187
BssECI CCNNGG 2 cut(s) 90, 173
BssMI GATC 4 cut(s) 30, 295, 366, 409
BssSI CACGAG 1 cut(s) 105
Bst2BI CACGAG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 3 cut(s) 138, 232, 257
Bst6I CTCTTC 1 cut(s) 640
BstC8I GCNNGC 2 cut(s) 250, 397
BstDEI CTNAG 2 cut(s) 473, 656
BstF5I GGATG 4 cut(s) 124, 127, 319, 343
BstFNI CGCG 1 cut(s) 627
BstKTI GATC 4 cut(s) 33, 298, 369, 412
BstMAI GTCTC 3 cut(s) 15, 117, 546
BstMBI GATC 4 cut(s) 30, 295, 366, 409
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 172
BstSFI CTRYAG 1 cut(s) 640
BstUI CGCG 1 cut(s) 627
BstX2I RGATCY 2 cut(s) 295, 409
BstYI RGATCY 2 cut(s) 295, 409
BsuRI GGCC 1 cut(s) 248
BtsCI GGATG 4 cut(s) 124, 127, 319, 343
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 1 cut(s) 543
Cac8I GCNNGC 2 cut(s) 250, 397
Cfr13I GGNCC 1 cut(s) 246
Csp6I GTAC 3 cut(s) 139, 157, 470
CviAII CATG 4 cut(s) 49, 584, 595, 651
CviJI RGCY 5 cut(s) 112, 248, 439, 607, 655
CviKI_1 RGCY 5 cut(s) 112, 248, 439, 607, 655
CviQI GTAC 3 cut(s) 139, 157, 470
DdeI CTNAG 2 cut(s) 473, 656
DpnI GATC 4 cut(s) 32, 297, 368, 411
DpnII GATC 4 cut(s) 30, 295, 366, 409
Eam1104I CTCTTC 1 cut(s) 640
EarI CTCTTC 1 cut(s) 640
Ecl136II GAGCTC 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 117
Eco53kI GAGCTC 1 cut(s) 112
Eco88I CYCGRG 1 cut(s) 40
EcoICRI GAGCTC 1 cut(s) 112
EcoRI GAATTC 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 172
EcoT22I ATGCAT 1 cut(s) 589
EcoT38I GRGCYC 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 15
FaeI CATG 4 cut(s) 52, 587, 598, 654
FaqI GGGAC 1 cut(s) 50
FatI CATG 4 cut(s) 48, 583, 594, 650
FauNDI CATATG 2 cut(s) 458, 589
Fnu4HI GCNGC 2 cut(s) 100, 566
FokI GGATG 4 cut(s) 114, 131, 326, 350
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 2 cut(s) 100, 566
FspBI CTAG 1 cut(s) 285
GluI GCNGC 2 cut(s) 100, 566
HaeIII GGCC 1 cut(s) 248
Hin1II CATG 4 cut(s) 52, 587, 598, 654
HinfI GANTC 5 cut(s) 38, 80, 319, 511, 554
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 3 cut(s) 91, 183, 526
Hpy188III TCNNGA 3 cut(s) 42, 107, 208
Hpy8I GTNNAC 1 cut(s) 159
Hpy99I CGWCG 1 cut(s) 168
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 3 cut(s) 138, 232, 257
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 2 cut(s) 351, 587
HpyF3I CTNAG 2 cut(s) 473, 656
HpySE526I ACGT 1 cut(s) 373
Hsp92II CATG 4 cut(s) 52, 587, 598, 654
Kzo9I GATC 4 cut(s) 30, 295, 366, 409
LpnPI CCDG 8 cut(s) 19, 159, 186, 200, 262, 388, 449, 518
LweI GCATC 3 cut(s) 66, 436, 604
MaeI CTAG 1 cut(s) 285
MaeII ACGT 1 cut(s) 373
MaeIII GTNAC 3 cut(s) 63, 73, 257
MalI GATC 4 cut(s) 32, 297, 368, 411
MbiI CCGCTC 1 cut(s) 102
MboI GATC 4 cut(s) 30, 295, 366, 409
MboII GAAGA 5 cut(s) 209, 223, 264, 290, 627
MflI RGATCY 2 cut(s) 295, 409
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 1 cut(s) 221
MlyI GAGTC 3 cut(s) 32, 74, 548
MmeI TCCRAC 1 cut(s) 314
MnlI CCTC 7 cut(s) 85, 328, 350, 400, 484, 591, 653
Mph1103I ATGCAT 1 cut(s) 589
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 588
MspR9I CCNGG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 174
MvnI CGCG 1 cut(s) 627
NdeI CATATG 2 cut(s) 458, 589
NdeII GATC 4 cut(s) 30, 295, 366, 409
NlaIII CATG 4 cut(s) 52, 587, 598, 654
NlaIV GGNNCC 2 cut(s) 185, 343
NmuCI GTSAC 2 cut(s) 63, 257
NsiI ATGCAT 1 cut(s) 589
PcsI WCGNNNNNNNCGW 1 cut(s) 103
PfeI GAWTC 2 cut(s) 319, 511
PkrI GCNGC 2 cut(s) 101, 567
PleI GAGTC 3 cut(s) 32, 74, 548
PpsI GAGTC 3 cut(s) 32, 74, 548
Psp124BI GAGCTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 2 cut(s) 185, 343
PspPI GGNCC 1 cut(s) 246
PsuI RGATCY 2 cut(s) 295, 409
RsaI GTAC 3 cut(s) 140, 158, 471
RsaNI GTAC 3 cut(s) 139, 157, 470
RseI CAYNNNNRTG 1 cut(s) 588
SacI GAGCTC 1 cut(s) 114
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 2 cut(s) 100, 566
Sau3AI GATC 4 cut(s) 30, 295, 366, 409
Sau96I GGNCC 1 cut(s) 246
ScaI AGTACT 1 cut(s) 471
SchI GAGTC 3 cut(s) 32, 74, 548
ScrFI CCNGG 1 cut(s) 174
SduI GDGCHC 1 cut(s) 114
SetI ASST 5 cut(s) 9, 114, 264, 376, 441
SfaNI GCATC 3 cut(s) 66, 436, 604
SfcI CTRYAG 1 cut(s) 640
SmiMI CAYNNNNRTG 1 cut(s) 588
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 1 cut(s) 221
SsiI CCGC 3 cut(s) 100, 565, 625
SspMI CTAG 1 cut(s) 285
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 172
TaaI ACNGT 3 cut(s) 138, 232, 257
TaiI ACGT 1 cut(s) 376
TaqI TCGA 1 cut(s) 149
TasI AATT 1 cut(s) 221
TatI WGTACW 1 cut(s) 469
TauI GCSGC 2 cut(s) 102, 568
TfiI GAWTC 2 cut(s) 319, 511
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 1 cut(s) 543
TseFI GTSAC 2 cut(s) 63, 257
Tsp45I GTSAC 2 cut(s) 63, 257
TspDTI ATGAA 2 cut(s) 210, 290
TspGWI ACGGA 1 cut(s) 470
TspRI CASTG 1 cut(s) 543
XapI RAATTY 1 cut(s) 221
XspI CTAG 1 cut(s) 285
ZrmI AGTACT 1 cut(s) 471
Zsp2I ATGCAT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.