FvH4_1g28260

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016574
Physical Location & Seq
Forward (+)
20085163 .. 20087250
2088 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g28260.t1

Sequence Viewer

Length: 660 bp
ATGGATTTGGGAGCAGAGAAGACGCAGAGCGAGAACCATAACAGCTACGCGAGAGCTCTCATAGATTCTACTAGTGCTTCTTCTGCCGATGACGAACGCGAGCTCAGAGCTGGACTCCATCCCCTTAAGAACAAATTCGTGTTCTGGTACACTCGTCGCACACCTGGAGTTCGAAGCCAGACTTCATATGAAGACAACATCAAGAAGATTGTGGACTTCAGCACTGTTGAGGGTTTCTGGGTGTGTTATTGCCACCTAGCCCGTCCTTCCTCTCTGCCGAGCCCGACTGACTTGCATCTCTTCAAGGAAGGCATTCGCCCTCTTTGGGAGGACTCTGCTAATTGCAATGGTGGTAAATGGATTATACGCTTCAAGAAGGCTGTCTCTGGCCGCTTCTGGGAGGACCTCGTTCTTGCCTTGGTTGGTGACCAACTTGACTATGGAGAGAACATATGCGGGGCGGTACTAAGCATTAGATTCAATGAGGATATAGTATCTATCTGGAATCGTAATGCGTCTGATCATCAGGCTGTAATGGCTTTAAGAGATGCAATCAAGCGGAACTTGAAGCTTCCACACAGCTATGTCATGGAATACAAGCCACATGATGCTTCACTCCGTGACAATTCATCATATCGAAACACTTGGTTGAGGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko03013 ko04066 ko04150 ko04151 ko04211 ko04910 map01521 map03013 map04066 map04150 map04151 map04211 map04910
Pfam Domains
Protein Families
IF4E

Protein Analysis

220

Amino Acids

25.08

Weight (kDa)

7.71

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IF4E PF01652 41 - 199 6.9e-56 Eukaryotic initiation factor 4E
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016574)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18110
fragaria_vesca FvH4_1g28260
malus_domestica MD12G1004900.v1.1 MD14G1003400.v1.1
prunus_persica Prupe.7G005900_v2.0.a1
pyrus_communis pycom12g00400 pycom14g00140
rosa_chinensis RchiOBHm_Chr3g0496901
rosa_laevigata RLG00000022491
rosa_roxburghii Rroxscaffold_6G00388600
rosa_rugosa Rorug03G0288400
rosa_samantha Rh3AG332300 Rh3DG368300
rosa_wichuraiana Rw3G029190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 50, 99
AciI CCGC 4 cut(s) 391, 456, 461, 559
AcoI YGGCCR 1 cut(s) 388
AcsI RAATTY 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 202
AdeI CACNNNGTG 1 cut(s) 620
AfaI GTAC 2 cut(s) 149, 465
AfiI CCNNNNNNNGG 2 cut(s) 325, 397
AflII CTTAAG 1 cut(s) 125
AgsI TTSAA 4 cut(s) 304, 373, 481, 568
AhlI ACTAGT 1 cut(s) 71
AjnI CCWGG 1 cut(s) 163
AluBI AGCT 6 cut(s) 45, 56, 103, 110, 571, 582
AluI AGCT 6 cut(s) 45, 56, 103, 110, 571, 582
Alw21I GWGCWC 2 cut(s) 58, 105
Alw26I GTCTC 1 cut(s) 388
AoxI GGCC 1 cut(s) 388
ApoI RAATTY 1 cut(s) 134
Asp700I GAANNNNTTC 2 cut(s) 134, 312
AspS9I GGNCC 1 cut(s) 403
AsuHPI GGTGA 1 cut(s) 437
AsuII TTCGAA 1 cut(s) 172
AvaII GGWCC 1 cut(s) 403
BaeI ACNNNNGTAYC 2 cut(s) 139, 172
BanII GRGCYC 3 cut(s) 58, 105, 284
BbsI GAAGAC 2 cut(s) 26, 198
Bbv12I GWGCWC 2 cut(s) 58, 105
BccI CCATC 1 cut(s) 126
BcgI CGANNNNNNTGC 2 cut(s) 274, 308
BciT130I CCWGG 1 cut(s) 165
BclI TGATCA 1 cut(s) 520
BcoDI GTCTC 1 cut(s) 388
BcuI ACTAGT 1 cut(s) 71
BfaI CTAG 2 cut(s) 72, 257
BfrI CTTAAG 1 cut(s) 125
BisI GCNGC 1 cut(s) 391
BlsI GCNGC 1 cut(s) 392
Bme1390I CCNGG 1 cut(s) 165
Bme18I GGWCC 1 cut(s) 403
BmgT120I GGNCC 1 cut(s) 403
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 3 cut(s) 304, 538, 598
BpiI GAAGAC 2 cut(s) 26, 198
BplI GAGNNNNNCTC 2 cut(s) 99, 131
BpmI CTGGAG 1 cut(s) 186
Bpu14I TTCGAA 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 417
Bsc4I CCNNNNNNNGG 2 cut(s) 325, 397
Bse3DI GCAATG 1 cut(s) 352
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 417
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 2 cut(s) 325, 397
BseMI GCAATG 1 cut(s) 352
BseMII CTCAG 1 cut(s) 118
Bsh1236I CGCG 2 cut(s) 50, 99
BshFI GGCC 1 cut(s) 390
BsiHKAI GWGCWC 2 cut(s) 58, 105
BslI CCNNNNNNNGG 2 cut(s) 325, 397
BsmAI GTCTC 1 cut(s) 388
BsmI GAATGC 1 cut(s) 312
BsnI GGCC 1 cut(s) 390
Bsp119I TTCGAA 1 cut(s) 172
Bsp1286I GDGCHC 3 cut(s) 58, 105, 284
Bsp143I GATC 1 cut(s) 520
BspACI CCGC 4 cut(s) 391, 456, 461, 559
BspANI GGCC 1 cut(s) 390
BspCNI CTCAG 1 cut(s) 117
BspFNI CGCG 2 cut(s) 50, 99
BspT104I TTCGAA 1 cut(s) 172
BspTI CTTAAG 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 352
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 1 cut(s) 520
BssT1I CCWWGG 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 1 cut(s) 305
BstAFI CTTAAG 1 cut(s) 125
BstBI TTCGAA 1 cut(s) 172
BstC8I GCNNGC 1 cut(s) 101
BstDEI CTNAG 2 cut(s) 104, 467
BstEII GGTNACC 1 cut(s) 425
BstF5I GGATG 1 cut(s) 118
BstFNI CGCG 2 cut(s) 50, 99
BstKTI GATC 1 cut(s) 523
BstMAI GTCTC 1 cut(s) 388
BstMBI GATC 1 cut(s) 520
BstMWI GCNNNNNNNGC 2 cut(s) 83, 536
BstNI CCWGG 1 cut(s) 165
BstPI GGTNACC 1 cut(s) 425
BstSCI CCNGG 1 cut(s) 163
BstUI CGCG 2 cut(s) 50, 99
BstV2I GAAGAC 2 cut(s) 26, 198
BsuRI GGCC 1 cut(s) 390
BtsCI GGATG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 403
CseI GACGC 2 cut(s) 31, 504
Csp6I GTAC 2 cut(s) 148, 464
CviAII CATG 2 cut(s) 589, 605
CviQI GTAC 2 cut(s) 148, 464
DdeI CTNAG 2 cut(s) 104, 467
DpnI GATC 1 cut(s) 522
DpnII GATC 1 cut(s) 520
DraIII CACNNNGTG 1 cut(s) 620
EaeI YGGCCR 1 cut(s) 388
Eam1104I CTCTTC 1 cut(s) 305
EarI CTCTTC 1 cut(s) 305
Ecl136II GAGCTC 2 cut(s) 56, 103
Eco130I CCWWGG 1 cut(s) 417
Eco24I GRGCYC 3 cut(s) 58, 105, 284
Eco47I GGWCC 1 cut(s) 403
Eco53kI GAGCTC 2 cut(s) 56, 103
Eco57I CTGAAG 1 cut(s) 202
Eco91I GGTNACC 1 cut(s) 425
EcoICRI GAGCTC 2 cut(s) 56, 103
EcoO109I RGGNCCY 1 cut(s) 403
EcoO65I GGTNACC 1 cut(s) 425
EcoRII CCWGG 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 417
EcoT38I GRGCYC 3 cut(s) 58, 105, 284
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 2 cut(s) 592, 608
FalI AAGNNNNNCTT 4 cut(s) 166, 198, 548, 580
FatI CATG 2 cut(s) 588, 604
FauI CCCGC 1 cut(s) 449
FauNDI CATATG 2 cut(s) 187, 452
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 1 cut(s) 391
FokI GGATG 1 cut(s) 105
FriOI GRGCYC 3 cut(s) 58, 105, 284
Fsp4HI GCNGC 1 cut(s) 391
FspBI CTAG 2 cut(s) 72, 257
GluI GCNGC 1 cut(s) 391
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 1 cut(s) 390
HgaI GACGC 2 cut(s) 31, 504
Hin1II CATG 2 cut(s) 592, 608
HindIII AAGCTT 1 cut(s) 569
HinfI GANTC 5 cut(s) 65, 114, 332, 477, 505
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 2 cut(s) 150, 214
Hpy188I TCNGA 2 cut(s) 107, 520
Hpy188III TCNNGA 3 cut(s) 202, 373, 502
Hpy8I GTNNAC 2 cut(s) 150, 214
Hpy99I CGWCG 1 cut(s) 159
HpyAV CCTTC 3 cut(s) 276, 302, 370
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 3 cut(s) 295, 345, 551
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 536
HpyF3I CTNAG 2 cut(s) 104, 467
Hsp92II CATG 2 cut(s) 592, 608
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 1 cut(s) 520
LmnI GCTCC 1 cut(s) 11
LweI GCATC 3 cut(s) 304, 538, 598
MaeI CTAG 2 cut(s) 72, 257
MaeIII GTNAC 2 cut(s) 425, 620
MalI GATC 1 cut(s) 522
MboI GATC 1 cut(s) 520
MboII GAAGA 5 cut(s) 31, 72, 203, 217, 292
MhlI GDGCHC 3 cut(s) 58, 105, 284
MluCI AATT 3 cut(s) 134, 340, 625
MlyI GAGTC 2 cut(s) 108, 326
MnlI CCTC 8 cut(s) 223, 280, 322, 330, 394, 416, 478, 645
MroXI GAANNNNTTC 2 cut(s) 134, 312
MseI TTAA 2 cut(s) 126, 542
MslI CAYNNNNRTG 1 cut(s) 582
MspCI CTTAAG 1 cut(s) 125
MspR9I CCNGG 1 cut(s) 165
Mva1269I GAATGC 1 cut(s) 312
MvaI CCWGG 1 cut(s) 165
MvnI CGCG 2 cut(s) 50, 99
MwoI GCNNNNNNNGC 2 cut(s) 83, 536
NdeI CATATG 2 cut(s) 187, 452
NdeII GATC 1 cut(s) 520
NlaIII CATG 2 cut(s) 592, 608
NmeAIII GCCGAG 1 cut(s) 303
NmuCI GTSAC 2 cut(s) 425, 620
NspV TTCGAA 1 cut(s) 172
PctI GAATGC 1 cut(s) 312
PdmI GAANNNNTTC 2 cut(s) 134, 312
PfeI GAWTC 3 cut(s) 65, 477, 505
PkrI GCNGC 1 cut(s) 392
PleI GAGTC 2 cut(s) 108, 326
PpsI GAGTC 2 cut(s) 108, 326
PpuMI RGGWCCY 1 cut(s) 403
Psp124BI GAGCTC 2 cut(s) 58, 105
Psp5II RGGWCCY 1 cut(s) 403
Psp6I CCWGG 1 cut(s) 163
PspEI GGTNACC 1 cut(s) 425
PspGI CCWGG 1 cut(s) 163
PspPI GGNCC 1 cut(s) 403
PspPPI RGGWCCY 1 cut(s) 403
RsaI GTAC 2 cut(s) 149, 465
RsaNI GTAC 2 cut(s) 148, 464
RseI CAYNNNNRTG 1 cut(s) 582
SacI GAGCTC 2 cut(s) 58, 105
SaqAI TTAA 2 cut(s) 126, 542
SatI GCNGC 1 cut(s) 391
Sau3AI GATC 1 cut(s) 520
Sau96I GGNCC 1 cut(s) 403
SchI GAGTC 2 cut(s) 108, 326
ScrFI CCNGG 1 cut(s) 165
SduI GDGCHC 3 cut(s) 58, 105, 284
SetI ASST 9 cut(s) 47, 58, 105, 112, 166, 258, 408, 573, 584
SfaNI GCATC 3 cut(s) 304, 538, 598
SfuI TTCGAA 1 cut(s) 172
SinI GGWCC 1 cut(s) 403
SmiMI CAYNNNNRTG 1 cut(s) 582
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
SpeI ACTAGT 1 cut(s) 71
Sse9I AATT 3 cut(s) 134, 340, 625
SsiI CCGC 4 cut(s) 391, 456, 461, 559
SspMI CTAG 2 cut(s) 72, 257
SstI GAGCTC 2 cut(s) 58, 105
StyD4I CCNGG 1 cut(s) 163
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 1 cut(s) 226
TaqI TCGA 2 cut(s) 172, 637
TasI AATT 3 cut(s) 134, 340, 625
TauI GCSGC 1 cut(s) 393
TfiI GAWTC 3 cut(s) 65, 477, 505
Tru1I TTAA 2 cut(s) 126, 542
Tru9I TTAA 2 cut(s) 126, 542
TscAI CASTG 1 cut(s) 229
TseFI GTSAC 2 cut(s) 425, 620
Tsp45I GTSAC 2 cut(s) 425, 620
TspDTI ATGAA 3 cut(s) 174, 204, 618
TspGWI ACGGA 1 cut(s) 608
TspRI CASTG 1 cut(s) 229
Vha464I CTTAAG 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 403
XapI RAATTY 1 cut(s) 134
XcmI CCANNNNNNNNNTGG 1 cut(s) 437
XmnI GAANNNNTTC 2 cut(s) 134, 312
XspI CTAG 2 cut(s) 72, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.