Rh3DG368300

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0016574
Physical Location & Seq
Reverse (-)
46379702 .. 46381951
2250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG368300.1

Sequence Viewer

Length: 693 bp
ATGGATTTGATTGCTGCAGAGAAGAAGGAATCGGACAACAGCCACAGCGAGAATCATAATAGCTATGCAAGAGCACTTATAGATTCTACCGCTCCTACTACCGACAACACCAAGGAAGCCGACGACGAACGCGACCTCAGAGCTGGTCTCCATCCCCTCAAGAACAAATTCGTATTTTGGTACACTCGCCGAACGCCAGGAATTCGAAGCCAGACGTCTTATGAAGACAACATCAAGAAAATTGTCGATTTCAGCACGGTTGAAGGTTTTTGGGTGTGCTATTGCCACCTAGCCCGTCCTTCCTCACTGCCTAGCCCAACTGACTTGCATCTGTTCAAGGAGGGAATTCGCCCTCTTTGGGAGGACTCTGCTAATTGCAATGGTGGTAAATGGATAATACGATTCAAAAAGGTTGTCTCAGGCCGCTTTTGGGAGGACCTGGTTCTTGCCTTGGTGGGTGACCAACTTGACTATGGAGAGAACATATGTGGTGCTGTACTAAGCATTAGATTCAATGAGGATATAGTGAGTATCTGGAATCGTAATGCTTCTGATCATCAGGCTGTAATGGCTTTAAGAGATGCAATTAAGCGGAACTTGAAGCTTCCACACAGCTATGTCATGGAATACAAGCCTCATGATGCTTCACTCCGTGACAATTCATCATATCGAAACACTTGGTTGAGGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko03013 ko04066 ko04150 ko04151 ko04211 ko04910 map01521 map03013 map04066 map04150 map04151 map04211 map04910
Pfam Domains
Protein Families
IF4E

Protein Analysis

230

Amino Acids

26.43

Weight (kDa)

6.71

Isoelectric Point (pI)

35.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IF4E PF01652 52 - 210 1.6e-55 Eukaryotic initiation factor 4E
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016574)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18110
fragaria_vesca FvH4_1g28260
malus_domestica MD12G1004900.v1.1 MD14G1003400.v1.1
prunus_persica Prupe.7G005900_v2.0.a1
pyrus_communis pycom12g00400 pycom14g00140
rosa_chinensis RchiOBHm_Chr3g0496901
rosa_laevigata RLG00000022491
rosa_roxburghii Rroxscaffold_6G00388600
rosa_rugosa Rorug03G0288400
rosa_samantha Rh3AG332300 Rh3DG368300
rosa_wichuraiana Rw3G029190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 218
AccBSI CCGCTC 1 cut(s) 92
AccII CGCG 1 cut(s) 132
AciI CCGC 3 cut(s) 90, 424, 592
AcsI RAATTY 3 cut(s) 167, 201, 345
AcyI GRCGYC 1 cut(s) 215
AdeI CACNNNGTG 1 cut(s) 653
AfaI GTAC 2 cut(s) 182, 498
AfiI CCNNNNNNNGG 2 cut(s) 358, 430
AgsI TTSAA 5 cut(s) 263, 337, 406, 514, 601
AjnI CCWGG 2 cut(s) 196, 438
AluBI AGCT 4 cut(s) 63, 143, 604, 615
AluI AGCT 4 cut(s) 63, 143, 604, 615
Alw21I GWGCWC 1 cut(s) 76
Alw26I GTCTC 2 cut(s) 152, 421
AoxI GGCC 1 cut(s) 421
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 3 cut(s) 167, 201, 345
ArsI GACNNNNNNTTYG 2 cut(s) 399, 431
Asp700I GAANNNNTTC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 436
AsuHPI GGTGA 1 cut(s) 470
AsuII TTCGAA 1 cut(s) 205
AvaII GGWCC 1 cut(s) 436
BbsI GAAGAC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 76
BccI CCATC 1 cut(s) 159
BciT130I CCWGG 2 cut(s) 198, 440
BclI TGATCA 1 cut(s) 553
BcoDI GTCTC 2 cut(s) 152, 421
BfaI CTAG 2 cut(s) 290, 312
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 2 cut(s) 15, 424
BlsI GCNGC 2 cut(s) 16, 425
Bme1390I CCNGG 2 cut(s) 198, 440
Bme18I GGWCC 1 cut(s) 436
BmgT120I GGNCC 1 cut(s) 436
BmrFI CCNGG 2 cut(s) 198, 440
BmsI GCATC 3 cut(s) 337, 571, 631
BpiI GAAGAC 1 cut(s) 231
BplI GAGNNNNNCTC 2 cut(s) 132, 164
Bpu14I TTCGAA 1 cut(s) 205
BpuEI CTTGAG 1 cut(s) 143
BsaHI GRCGYC 1 cut(s) 215
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 2 cut(s) 111, 450
Bsc4I CCNNNNNNNGG 2 cut(s) 358, 430
Bse3DI GCAATG 1 cut(s) 385
BseBI CCWGG 2 cut(s) 198, 440
BseDI CCNNGG 2 cut(s) 111, 450
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 2 cut(s) 358, 430
BseMI GCAATG 1 cut(s) 385
BseMII CTCAG 2 cut(s) 151, 432
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 1 cut(s) 423
BsiHKAI GWGCWC 1 cut(s) 76
BslI CCNNNNNNNGG 2 cut(s) 358, 430
BsmAI GTCTC 2 cut(s) 152, 421
BsnI GGCC 1 cut(s) 423
Bso31I GGTCTC 1 cut(s) 152
Bsp119I TTCGAA 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 76
Bsp143I GATC 1 cut(s) 553
BspACI CCGC 3 cut(s) 90, 424, 592
BspANI GGCC 1 cut(s) 423
BspCNI CTCAG 2 cut(s) 150, 431
BspFNI CGCG 1 cut(s) 132
BspHI TCATGA 1 cut(s) 637
BspMAI CTGCAG 1 cut(s) 19
BspT104I TTCGAA 1 cut(s) 205
BspTNI GGTCTC 1 cut(s) 152
BsrBI CCGCTC 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 385
BssECI CCNNGG 2 cut(s) 111, 450
BssMI GATC 1 cut(s) 553
BssNI GRCGYC 1 cut(s) 215
BssT1I CCWWGG 2 cut(s) 111, 450
Bst2UI CCWGG 2 cut(s) 198, 440
Bst4CI ACNGT 1 cut(s) 259
BstACI GRCGYC 1 cut(s) 215
BstBI TTCGAA 1 cut(s) 205
BstDEI CTNAG 3 cut(s) 137, 418, 500
BstEII GGTNACC 1 cut(s) 458
BstF5I GGATG 1 cut(s) 151
BstFNI CGCG 1 cut(s) 132
BstKTI GATC 1 cut(s) 556
BstMAI GTCTC 2 cut(s) 152, 421
BstMBI GATC 1 cut(s) 553
BstMWI GCNNNNNNNGC 1 cut(s) 569
BstNI CCWGG 2 cut(s) 198, 440
BstPI GGTNACC 1 cut(s) 458
BstSCI CCNGG 2 cut(s) 196, 438
BstSFI CTRYAG 1 cut(s) 15
BstUI CGCG 1 cut(s) 132
BstV2I GAAGAC 1 cut(s) 231
BsuRI GGCC 1 cut(s) 423
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 305
BtsIMutI CAGTG 1 cut(s) 305
CciI TCATGA 1 cut(s) 637
Cfr13I GGNCC 1 cut(s) 436
CsiI ACCWGGT 1 cut(s) 438
Csp6I GTAC 2 cut(s) 181, 497
CviAII CATG 2 cut(s) 622, 638
CviQI GTAC 2 cut(s) 181, 497
DdeI CTNAG 3 cut(s) 137, 418, 500
DpnI GATC 1 cut(s) 555
DpnII GATC 1 cut(s) 553
DraIII CACNNNGTG 1 cut(s) 653
Eco130I CCWWGG 2 cut(s) 111, 450
Eco31I GGTCTC 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 436
Eco91I GGTNACC 1 cut(s) 458
EcoO109I RGGNCCY 1 cut(s) 436
EcoO65I GGTNACC 1 cut(s) 458
EcoRI GAATTC 2 cut(s) 201, 345
EcoRII CCWGG 2 cut(s) 196, 438
EcoT14I CCWWGG 2 cut(s) 111, 450
ErhI CCWWGG 2 cut(s) 111, 450
FaeI CATG 2 cut(s) 625, 641
FalI AAGNNNNNCTT 2 cut(s) 581, 613
FatI CATG 2 cut(s) 621, 637
FauNDI CATATG 1 cut(s) 485
FbaI TGATCA 1 cut(s) 553
Fnu4HI GCNGC 2 cut(s) 15, 424
FokI GGATG 1 cut(s) 138
Fsp4HI GCNGC 2 cut(s) 15, 424
FspBI CTAG 2 cut(s) 290, 312
GluI GCNGC 2 cut(s) 15, 424
HaeIII GGCC 1 cut(s) 423
Hin1I GRCGYC 1 cut(s) 215
Hin1II CATG 2 cut(s) 625, 641
HindIII AAGCTT 1 cut(s) 602
HinfI GANTC 7 cut(s) 29, 52, 83, 365, 402, 510, 538
HphI GGTGA 1 cut(s) 470
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 3 cut(s) 34, 140, 553
Hpy188III TCNNGA 4 cut(s) 160, 235, 535, 638
Hpy8I GTNNAC 1 cut(s) 183
Hpy99I CGWCG 2 cut(s) 125, 128
HpyAV CCTTC 3 cut(s) 19, 257, 309
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 215
HpyCH4V TGCA 5 cut(s) 17, 68, 328, 378, 584
HpyF10VI GCNNNNNNNGC 1 cut(s) 569
HpyF3I CTNAG 3 cut(s) 137, 418, 500
HpySE526I ACGT 1 cut(s) 215
Hsp92I GRCGYC 1 cut(s) 215
Hsp92II CATG 2 cut(s) 625, 641
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 1 cut(s) 553
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 9 cut(s) 129, 183, 210, 224, 405, 425, 452, 520, 545
LweI GCATC 3 cut(s) 337, 571, 631
MabI ACCWGGT 1 cut(s) 438
MaeI CTAG 2 cut(s) 290, 312
MaeII ACGT 1 cut(s) 215
MaeIII GTNAC 2 cut(s) 458, 653
MalI GATC 1 cut(s) 555
MbiI CCGCTC 1 cut(s) 92
MboI GATC 1 cut(s) 553
MboII GAAGA 2 cut(s) 34, 236
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 7 cut(s) 167, 201, 240, 345, 373, 585, 658
MlyI GAGTC 1 cut(s) 359
MroXI GAANNNNTTC 1 cut(s) 167
MseI TTAA 2 cut(s) 575, 588
MslI CAYNNNNRTG 1 cut(s) 615
MspR9I CCNGG 2 cut(s) 198, 440
MvaI CCWGG 2 cut(s) 198, 440
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 569
NdeI CATATG 1 cut(s) 485
NdeII GATC 1 cut(s) 553
NlaIII CATG 2 cut(s) 625, 641
NmuCI GTSAC 2 cut(s) 458, 653
NspV TTCGAA 1 cut(s) 205
PagI TCATGA 1 cut(s) 637
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 167
PfeI GAWTC 6 cut(s) 29, 52, 83, 402, 510, 538
PkrI GCNGC 2 cut(s) 16, 425
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
PpuMI RGGWCCY 1 cut(s) 436
Psp5II RGGWCCY 1 cut(s) 436
Psp6I CCWGG 2 cut(s) 196, 438
PspEI GGTNACC 1 cut(s) 458
PspGI CCWGG 2 cut(s) 196, 438
PspPI GGNCC 1 cut(s) 436
PspPPI RGGWCCY 1 cut(s) 436
PstI CTGCAG 1 cut(s) 19
RsaI GTAC 2 cut(s) 182, 498
RsaNI GTAC 2 cut(s) 181, 497
RseI CAYNNNNRTG 1 cut(s) 615
SaqAI TTAA 2 cut(s) 575, 588
SatI GCNGC 2 cut(s) 15, 424
Sau3AI GATC 1 cut(s) 553
Sau96I GGNCC 1 cut(s) 436
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 2 cut(s) 198, 440
SduI GDGCHC 1 cut(s) 76
SexAI ACCWGGT 1 cut(s) 438
SfaNI GCATC 3 cut(s) 337, 571, 631
SfcI CTRYAG 1 cut(s) 15
SfuI TTCGAA 1 cut(s) 205
SinI GGWCC 1 cut(s) 436
SmiMI CAYNNNNRTG 1 cut(s) 615
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 7 cut(s) 167, 201, 240, 345, 373, 585, 658
SsiI CCGC 3 cut(s) 90, 424, 592
SspMI CTAG 2 cut(s) 290, 312
StyD4I CCNGG 2 cut(s) 196, 438
StyI CCWWGG 2 cut(s) 111, 450
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 1 cut(s) 218
TaqI TCGA 3 cut(s) 205, 246, 670
TasI AATT 7 cut(s) 167, 201, 240, 345, 373, 585, 658
TatI WGTACW 1 cut(s) 496
TauI GCSGC 1 cut(s) 426
TfiI GAWTC 6 cut(s) 29, 52, 83, 402, 510, 538
Tru1I TTAA 2 cut(s) 575, 588
Tru9I TTAA 2 cut(s) 575, 588
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 2 cut(s) 458, 653
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 2 cut(s) 458, 653
TspDTI ATGAA 2 cut(s) 237, 651
TspGWI ACGGA 1 cut(s) 641
TspRI CASTG 1 cut(s) 312
VpaK11BI GGWCC 1 cut(s) 436
XapI RAATTY 3 cut(s) 167, 201, 345
XcmI CCANNNNNNNNNTGG 1 cut(s) 470
XmnI GAANNNNTTC 1 cut(s) 167
XspI CTAG 2 cut(s) 290, 312
ZraI GACGTC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.