Rroxscaffold_6G00388600

eukaryotic translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016574
Physical Location & Seq
Forward (+)
1632477 .. 1634922
2446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00388600.1

Sequence Viewer

Length: 696 bp
ATGGATTTGATTGCTGCAGAGAAGAAGGAATCGGACAACAGCCACAGCGAGAATCATAATAGCTATGCAAGAGCACTTATAGATTCTACTTCTCCTGCTACCGATAACACCAAGGAAGCCGCCGACGACGAACGCGACCTCAGAGCTGGTCTCCATCCCCTCAAGAACAAATTCGTATTTTGGTACACTCGCCGAACACCAGGAATTCGAAGCCAGACGTCTTATGAAGACAACATAAAGAAAATTGTCGATTTCAGCACGGTTGAAGGTTTTTGGGTGTGCTATTGCCACCTAGCCCGTCCTTCCTCACTGCCTAGCCCAACTGACTTGCATCTGTTCAAGGAGGGAATTCGCCCTCTTTGGGAGGACTCTGCTAATTGCAATGGTGGTAAATGGATAATACGATTCAAAAAGGTTGTCTCAGGCCGCTTTTGGGAGGACCTGGTTCTTGCTTTGGTGGGTGACCAACTTGACTGTGGAGAGAACATATGTGGTGCTGTACTAAGCATTAGATTCAATGAGGATATAGTGAGTATCTGGAATCGTAATGCTTCTGATCATCAGGCTGTAATGGCTTTAAGAGATGCAATTAAGCGGAACTTGAAGCTTCCACACAGCTATGTCATGGAATACAAGCCTCATGATGCTTCACTCCGTGACAATTCATCATATCGAAACACTTGGTTGAGGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko03013 ko04066 ko04150 ko04151 ko04211 ko04910 map01521 map03013 map04066 map04150 map04151 map04211 map04910
Pfam Domains
Protein Families
IF4E

Protein Analysis

231

Amino Acids

26.43

Weight (kDa)

6.71

Isoelectric Point (pI)

38.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IF4E PF01652 53 - 211 3.7e-55 Eukaryotic initiation factor 4E
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016574)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18110
fragaria_vesca FvH4_1g28260
malus_domestica MD12G1004900.v1.1 MD14G1003400.v1.1
prunus_persica Prupe.7G005900_v2.0.a1
pyrus_communis pycom12g00400 pycom14g00140
rosa_chinensis RchiOBHm_Chr3g0496901
rosa_laevigata RLG00000022491
rosa_roxburghii Rroxscaffold_6G00388600
rosa_rugosa Rorug03G0288400
rosa_samantha Rh3AG332300 Rh3DG368300
rosa_wichuraiana Rw3G029190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 221
AccII CGCG 1 cut(s) 135
AciI CCGC 3 cut(s) 120, 427, 595
AcsI RAATTY 3 cut(s) 170, 204, 348
AcyI GRCGYC 1 cut(s) 218
AdeI CACNNNGTG 1 cut(s) 656
AfaI GTAC 2 cut(s) 185, 501
AfiI CCNNNNNNNGG 2 cut(s) 361, 433
AgsI TTSAA 5 cut(s) 266, 340, 409, 517, 604
AjnI CCWGG 2 cut(s) 199, 441
AluBI AGCT 4 cut(s) 63, 146, 607, 618
AluI AGCT 4 cut(s) 63, 146, 607, 618
Alw21I GWGCWC 1 cut(s) 76
Alw26I GTCTC 2 cut(s) 155, 424
AoxI GGCC 1 cut(s) 424
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 3 cut(s) 170, 204, 348
ArsI GACNNNNNNTTYG 2 cut(s) 402, 434
Asp700I GAANNNNTTC 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 439
AsuHPI GGTGA 1 cut(s) 473
AsuII TTCGAA 1 cut(s) 208
AvaII GGWCC 1 cut(s) 439
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 76
BccI CCATC 1 cut(s) 162
BciT130I CCWGG 2 cut(s) 201, 443
BclI TGATCA 1 cut(s) 556
BcoDI GTCTC 2 cut(s) 155, 424
BfaI CTAG 2 cut(s) 293, 315
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 3 cut(s) 15, 120, 427
BlsI GCNGC 3 cut(s) 16, 121, 428
Bme1390I CCNGG 2 cut(s) 201, 443
Bme18I GGWCC 1 cut(s) 439
BmgT120I GGNCC 1 cut(s) 439
BmrFI CCNGG 2 cut(s) 201, 443
BmsI GCATC 3 cut(s) 340, 574, 634
BpiI GAAGAC 1 cut(s) 234
BplI GAGNNNNNCTC 2 cut(s) 135, 167
Bpu14I TTCGAA 1 cut(s) 208
BpuEI CTTGAG 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 218
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 111
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 433
Bse3DI GCAATG 1 cut(s) 388
BseBI CCWGG 2 cut(s) 201, 443
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 2 cut(s) 361, 433
BseMI GCAATG 1 cut(s) 388
BseMII CTCAG 2 cut(s) 154, 435
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 1 cut(s) 426
BsiHKAI GWGCWC 1 cut(s) 76
BslI CCNNNNNNNGG 2 cut(s) 361, 433
BsmAI GTCTC 2 cut(s) 155, 424
BsnI GGCC 1 cut(s) 426
Bso31I GGTCTC 1 cut(s) 155
Bsp119I TTCGAA 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 76
Bsp143I GATC 1 cut(s) 556
BspACI CCGC 3 cut(s) 120, 427, 595
BspANI GGCC 1 cut(s) 426
BspCNI CTCAG 2 cut(s) 153, 434
BspFNI CGCG 1 cut(s) 135
BspHI TCATGA 1 cut(s) 640
BspMAI CTGCAG 1 cut(s) 19
BspT104I TTCGAA 1 cut(s) 208
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 388
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 1 cut(s) 556
BssNI GRCGYC 1 cut(s) 218
BssT1I CCWWGG 1 cut(s) 111
Bst2UI CCWGG 2 cut(s) 201, 443
Bst4CI ACNGT 2 cut(s) 262, 476
BstACI GRCGYC 1 cut(s) 218
BstBI TTCGAA 1 cut(s) 208
BstDEI CTNAG 3 cut(s) 140, 421, 503
BstEII GGTNACC 1 cut(s) 461
BstF5I GGATG 1 cut(s) 154
BstFNI CGCG 1 cut(s) 135
BstKTI GATC 1 cut(s) 559
BstMAI GTCTC 2 cut(s) 155, 424
BstMBI GATC 1 cut(s) 556
BstMWI GCNNNNNNNGC 1 cut(s) 572
BstNI CCWGG 2 cut(s) 201, 443
BstPI GGTNACC 1 cut(s) 461
BstSCI CCNGG 2 cut(s) 199, 441
BstSFI CTRYAG 1 cut(s) 15
BstUI CGCG 1 cut(s) 135
BstV2I GAAGAC 1 cut(s) 234
BsuRI GGCC 1 cut(s) 426
BtsCI GGATG 1 cut(s) 154
BtsI GCAGTG 1 cut(s) 308
BtsIMutI CAGTG 1 cut(s) 308
CciI TCATGA 1 cut(s) 640
Cfr13I GGNCC 1 cut(s) 439
CsiI ACCWGGT 1 cut(s) 441
Csp6I GTAC 2 cut(s) 184, 500
CviAII CATG 2 cut(s) 625, 641
CviQI GTAC 2 cut(s) 184, 500
DdeI CTNAG 3 cut(s) 140, 421, 503
DpnI GATC 1 cut(s) 558
DpnII GATC 1 cut(s) 556
DraIII CACNNNGTG 1 cut(s) 656
Eco130I CCWWGG 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 439
Eco91I GGTNACC 1 cut(s) 461
EcoO109I RGGNCCY 1 cut(s) 439
EcoO65I GGTNACC 1 cut(s) 461
EcoRI GAATTC 2 cut(s) 204, 348
EcoRII CCWGG 2 cut(s) 199, 441
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 2 cut(s) 628, 644
FalI AAGNNNNNCTT 2 cut(s) 584, 616
FatI CATG 2 cut(s) 624, 640
FauNDI CATATG 1 cut(s) 488
FbaI TGATCA 1 cut(s) 556
Fnu4HI GCNGC 3 cut(s) 15, 120, 427
FokI GGATG 1 cut(s) 141
Fsp4HI GCNGC 3 cut(s) 15, 120, 427
FspBI CTAG 2 cut(s) 293, 315
GluI GCNGC 3 cut(s) 15, 120, 427
HaeIII GGCC 1 cut(s) 426
Hin1I GRCGYC 1 cut(s) 218
Hin1II CATG 2 cut(s) 628, 644
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 7 cut(s) 29, 52, 83, 368, 405, 513, 541
HphI GGTGA 1 cut(s) 473
Hpy166II GTNNAC 1 cut(s) 186
Hpy188I TCNGA 3 cut(s) 34, 143, 556
Hpy188III TCNNGA 3 cut(s) 163, 538, 641
Hpy8I GTNNAC 1 cut(s) 186
Hpy99I CGWCG 2 cut(s) 128, 131
HpyAV CCTTC 3 cut(s) 19, 260, 312
HpyCH4III ACNGT 2 cut(s) 262, 476
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 5 cut(s) 17, 68, 331, 381, 587
HpyF10VI GCNNNNNNNGC 1 cut(s) 572
HpyF3I CTNAG 3 cut(s) 140, 421, 503
HpySE526I ACGT 1 cut(s) 218
Hsp92I GRCGYC 1 cut(s) 218
Hsp92II CATG 2 cut(s) 628, 644
Ksp22I TGATCA 1 cut(s) 556
Kzo9I GATC 1 cut(s) 556
LweI GCATC 3 cut(s) 340, 574, 634
MabI ACCWGGT 1 cut(s) 441
MaeI CTAG 2 cut(s) 293, 315
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 2 cut(s) 461, 656
MalI GATC 1 cut(s) 558
MboI GATC 1 cut(s) 556
MboII GAAGA 2 cut(s) 34, 239
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 7 cut(s) 170, 204, 243, 348, 376, 588, 661
MlyI GAGTC 1 cut(s) 362
MroXI GAANNNNTTC 1 cut(s) 170
MseI TTAA 2 cut(s) 578, 591
MslI CAYNNNNRTG 1 cut(s) 618
MspR9I CCNGG 2 cut(s) 201, 443
MvaI CCWGG 2 cut(s) 201, 443
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 572
NdeI CATATG 1 cut(s) 488
NdeII GATC 1 cut(s) 556
NlaIII CATG 2 cut(s) 628, 644
NmuCI GTSAC 2 cut(s) 461, 656
NspV TTCGAA 1 cut(s) 208
PagI TCATGA 1 cut(s) 640
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 6 cut(s) 29, 52, 83, 405, 513, 541
PkrI GCNGC 3 cut(s) 16, 121, 428
PleI GAGTC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 362
PpuMI RGGWCCY 1 cut(s) 439
Psp5II RGGWCCY 1 cut(s) 439
Psp6I CCWGG 2 cut(s) 199, 441
PspEI GGTNACC 1 cut(s) 461
PspGI CCWGG 2 cut(s) 199, 441
PspPI GGNCC 1 cut(s) 439
PspPPI RGGWCCY 1 cut(s) 439
PstI CTGCAG 1 cut(s) 19
RsaI GTAC 2 cut(s) 185, 501
RsaNI GTAC 2 cut(s) 184, 500
RseI CAYNNNNRTG 1 cut(s) 618
SaqAI TTAA 2 cut(s) 578, 591
SatI GCNGC 3 cut(s) 15, 120, 427
Sau3AI GATC 1 cut(s) 556
Sau96I GGNCC 1 cut(s) 439
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 2 cut(s) 201, 443
SduI GDGCHC 1 cut(s) 76
SexAI ACCWGGT 1 cut(s) 441
SfaNI GCATC 3 cut(s) 340, 574, 634
SfcI CTRYAG 1 cut(s) 15
SfuI TTCGAA 1 cut(s) 208
SinI GGWCC 1 cut(s) 439
SmiMI CAYNNNNRTG 1 cut(s) 618
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 7 cut(s) 170, 204, 243, 348, 376, 588, 661
SsiI CCGC 3 cut(s) 120, 427, 595
SspMI CTAG 2 cut(s) 293, 315
StyD4I CCNGG 2 cut(s) 199, 441
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 2 cut(s) 262, 476
TaiI ACGT 1 cut(s) 221
TaqI TCGA 3 cut(s) 208, 249, 673
TasI AATT 7 cut(s) 170, 204, 243, 348, 376, 588, 661
TatI WGTACW 1 cut(s) 499
TauI GCSGC 2 cut(s) 122, 429
TfiI GAWTC 6 cut(s) 29, 52, 83, 405, 513, 541
Tru1I TTAA 2 cut(s) 578, 591
Tru9I TTAA 2 cut(s) 578, 591
TscAI CASTG 1 cut(s) 315
TseFI GTSAC 2 cut(s) 461, 656
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 2 cut(s) 461, 656
TspDTI ATGAA 2 cut(s) 240, 654
TspGWI ACGGA 1 cut(s) 644
TspRI CASTG 1 cut(s) 315
VpaK11BI GGWCC 1 cut(s) 439
XapI RAATTY 3 cut(s) 170, 204, 348
XcmI CCANNNNNNNNNTGG 1 cut(s) 473
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 2 cut(s) 293, 315
ZraI GACGTC 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.