Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015366

Physical Location & Seq

Genomic Coordinates Reverse (-)

6164526 .. 6166040

Gene Structure 1515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G18560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTCAACCTCCAAAACCCTAGACCATAATAAACCATTTGAAACATCCCAAACGCAAATGGGTTTTGCTCTGATCCACCAAAACACATCCGCCAACACAACCACCACCACCACAACCGGCGAGAGACGAGGCCGGAGATCAAAGCAAGCGGAGCCAGGGAGGTTCCTAGGAGTCCGGAGACGTCCATGGGGTCGTTACGCAGCCGAGATAAGAGATCCAACCACCAAAGAACGTCACTGGCTAGGCACTTTCGACACAGCTCACGAAGCTGCTCTTGCCTACGATAGAGCTGCTCTTTCAATGAGAGGTACTCAAGCTCGAACCAACTTCGTCTACACTCCAACTGATGTCCACACCATCCTCACAAACCCTAATCTCCACTCTCTCATTGTCTCTCCTTACAATAACAACCAATCTTTCTTACCAAACTCTTCTCCACAGTTTGTCATCGATCATCATCCTCATTATCAAAACTATCATCAACCACAACAACCTAAACACACTCTCCCCCAAACTGTCTTACCCGCGGCTTCTTTCAAAACGCCAGTTCGTCATCAAAGCGTGGATATTCAAGCGTTTGGTAATAGTCCTCAAAACTCATCTTCTAACGGCTCGTTATCTTCTTCACTAGACGAAGAAAACAACTTCTTCTTCTCTTTAACAAGCGAAGAACATAATAAGTCCAATAACAACTCGGGTTACTTGGATTGCATTGTCCCAAACCACTGCCTTAAACCACCTCCGGAGGCCACCACCACCCAAAATCAAGCCGGAGCTAGTTTCACAACTCCGGTAGCAAGCAAAGCCTCTGAACCATATGGAGGGTTTAGTAATAGCTACTTCGAAGATGGTGAGATGATGATGATGAATCATCATGAGTTTGGTTCGTGTGATCTCTCTGCCATGATCACGAACTATGGTGCTGCTGCCGCTTCAATGTCAATGGAAGATTACGGGATGATGGAGCCGCAAGATTTATCTTCTTCTTCTATCGCTGCTTTTGGAGATGTCGTTGCAGACACTACAGGCTTCTACTCAGTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0010015 GO:0010022 GO:0010073 GO:0010101 GO:0010102 GO:0010432 GO:0010451 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1900618 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

348

Amino Acids

38.45

Weight (kDa)

6.03

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	56 - 103	3.9e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18560
fragaria_vesca	FvH4_4g17630
malus_domestica	MD13G1171200.v1.1 MD16G1172800.v1.1
prunus_persica	Prupe.1G139600_v2.0.a1
pyrus_communis	pycom16g14490
rosa_chinensis	RchiOBHm_Chr4g0421551
rosa_laevigata	RLG00000007668
rosa_multiflora	Rmu_sc0010734.1_g000007
rosa_roxburghii	Rroxscaffold_5G00363800
rosa_rugosa	Rorug04G0172700
rosa_samantha	Rh4AG233100 Rh4BG235800 Rh4CG247400 Rh4DG231700
rosa_wichuraiana	Rw4G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	184
AccI	GTMKAC	1 cut(s)	333
AccII	CGCG	1 cut(s)	527
AccIII	TCCGGA	2 cut(s)	174, 742
AciI	CCGC	6 cut(s)	90, 149, 525, 527, 930, 968
AclWI	GGATC	2 cut(s)	67, 209
AcyI	GRCGYC	1 cut(s)	181
AfaI	GTAC	1 cut(s)	310
AfiI	CCNNNNNNNGG	1 cut(s)	821
AgsI	TTSAA	5 cut(s)	41, 300, 538, 572, 936
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	6 cut(s)	260, 269, 290, 317, 776, 837
AluI	AGCT	6 cut(s)	260, 269, 290, 317, 776, 837
Alw26I	GTCTC	3 cut(s)	118, 172, 397
AlwI	GGATC	2 cut(s)	67, 209
Ama87I	CYCGRG	1 cut(s)	694
Aor13HI	TCCGGA	2 cut(s)	174, 742
AoxI	GGCC	2 cut(s)	130, 747
ApeKI	GCWGC	6 cut(s)	200, 269, 290, 923, 926, 995
AspA2I	CCTAGG	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	863
AsuII	TTCGAA	1 cut(s)	843
AvaI	CYCGRG	1 cut(s)	694
AvrII	CCTAGG	1 cut(s)	166
BbvI	GCAGC	6 cut(s)	212, 256, 277, 910, 913, 982
BccI	CCATC	3 cut(s)	365, 842, 955
BceAI	ACGGC	1 cut(s)	625
BcgI	CGANNNNNNTGC	2 cut(s)	272, 306
BciT130I	CCWGG	1 cut(s)	156
BclI	TGATCA	1 cut(s)	906
BcoDI	GTCTC	3 cut(s)	118, 172, 397
BfaI	CTAG	5 cut(s)	20, 167, 242, 629, 777
BfmI	CTRYAG	1 cut(s)	1023
BisI	GCNGC	9 cut(s)	201, 270, 291, 528, 924, 927, 930, 968, 996
BlnI	CCTAGG	1 cut(s)	166
BlsI	GCNGC	9 cut(s)	202, 271, 292, 529, 925, 928, 931, 969, 997
Bme1390I	CCNGG	1 cut(s)	156
BmeT110I	CYCGRG	1 cut(s)	694
BmiI	GGNNCC	3 cut(s)	153, 164, 966
BmrFI	CCNGG	1 cut(s)	156
BplI	GAGNNNNNCTC	2 cut(s)	295, 327
Bpu14I	TTCGAA	1 cut(s)	843
BpuEI	CTTGAG	1 cut(s)	297
Bsa29I	ATCGAT	1 cut(s)	450
BsaBI	GATNNNNATC	1 cut(s)	456
BsaHI	GRCGYC	1 cut(s)	181
BsaJI	CCNNGG	4 cut(s)	155, 166, 185, 525
BsaWI	WCCGGW	3 cut(s)	174, 742, 790
BsaXI	ACNNNNNCTCC	4 cut(s)	489, 519, 996, 1026
Bsc4I	CCNNNNNNNGG	1 cut(s)	821
Bse118I	RCCGGY	1 cut(s)	116
Bse1I	ACTGG	2 cut(s)	242, 545
Bse8I	GATNNNNATC	1 cut(s)	456
BseAI	TCCGGA	2 cut(s)	174, 742
BseBI	CCWGG	1 cut(s)	156
BseCI	ATCGAT	1 cut(s)	450
BseDI	CCNNGG	4 cut(s)	155, 166, 185, 525
BseGI	GGATG	5 cut(s)	44, 86, 357, 457, 963
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	1 cut(s)	821
BseNI	ACTGG	2 cut(s)	242, 545
BseXI	GCAGC	6 cut(s)	212, 256, 277, 910, 913, 982
Bsh1236I	CGCG	1 cut(s)	527
BshFI	GGCC	2 cut(s)	132, 749
BshVI	ATCGAT	1 cut(s)	450
BsiHKCI	CYCGRG	1 cut(s)	694
BsiSI	CCGG	6 cut(s)	117, 133, 175, 743, 771, 791
BslFI	GGGAC	1 cut(s)	701
BslI	CCNNNNNNNGG	1 cut(s)	821
BsmAI	GTCTC	3 cut(s)	118, 172, 397
BsmBI	CGTCTC	2 cut(s)	118, 172
BsmFI	GGGAC	1 cut(s)	701
BsnI	GGCC	2 cut(s)	132, 749
BsoBI	CYCGRG	1 cut(s)	694
Bsp119I	TTCGAA	1 cut(s)	843
Bsp13I	TCCGGA	2 cut(s)	174, 742
Bsp143I	GATC	6 cut(s)	72, 137, 214, 451, 892, 906
Bsp19I	CCATGG	1 cut(s)	185
BspACI	CCGC	6 cut(s)	90, 149, 525, 527, 930, 968
BspANI	GGCC	2 cut(s)	132, 749
BspDI	ATCGAT	1 cut(s)	450
BspEI	TCCGGA	2 cut(s)	174, 742
BspFNI	CGCG	1 cut(s)	527
BspHI	TCATGA	1 cut(s)	874
BspLI	GGNNCC	3 cut(s)	153, 164, 966
BspPI	GGATC	2 cut(s)	67, 209
BspT104I	TTCGAA	1 cut(s)	843
BsrFI	RCCGGY	1 cut(s)	116
BsrI	ACTGG	2 cut(s)	242, 545
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	4 cut(s)	155, 166, 185, 525
BssMI	GATC	6 cut(s)	72, 137, 214, 451, 892, 906
BssNI	GRCGYC	1 cut(s)	181
BssT1I	CCWWGG	2 cut(s)	166, 185
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	441, 517
Bst6I	CTCTTC	1 cut(s)	436
BstACI	GRCGYC	1 cut(s)	181
BstBI	TTCGAA	1 cut(s)	843
BstC8I	GCNNGC	2 cut(s)	147, 799
BstDEI	CTNAG	1 cut(s)	1036
BstDSI	CCRYGG	2 cut(s)	185, 525
BstF5I	GGATG	5 cut(s)	44, 86, 357, 457, 963
BstFNI	CGCG	1 cut(s)	527
BstKTI	GATC	6 cut(s)	75, 140, 217, 454, 895, 909
BstMAI	GTCTC	3 cut(s)	118, 172, 397
BstMBI	GATC	6 cut(s)	72, 137, 214, 451, 892, 906
BstMWI	GCNNNNNNNGC	5 cut(s)	151, 266, 275, 803, 929
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstSFI	CTRYAG	1 cut(s)	1023
BstUI	CGCG	1 cut(s)	527
BstV1I	GCAGC	6 cut(s)	212, 256, 277, 910, 913, 982
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
Bsu15I	ATCGAT	1 cut(s)	450
BsuRI	GGCC	2 cut(s)	132, 749
BsuTUI	ATCGAT	1 cut(s)	450
BtgI	CCRYGG	2 cut(s)	185, 525
BtsCI	GGATG	5 cut(s)	44, 86, 357, 457, 963
BtsI	GCAGTG	1 cut(s)	724
BtsIMutI	CAGTG	2 cut(s)	235, 724
Cac8I	GCNNGC	2 cut(s)	147, 799
CciI	TCATGA	1 cut(s)	874
Cfr10I	RCCGGY	1 cut(s)	116
Cfr42I	CCGCGG	1 cut(s)	528
ClaI	ATCGAT	1 cut(s)	450
Csp6I	GTAC	1 cut(s)	309
CviAII	CATG	3 cut(s)	186, 875, 904
CviQI	GTAC	1 cut(s)	309
DdeI	CTNAG	1 cut(s)	1036
DpnI	GATC	6 cut(s)	74, 139, 216, 453, 894, 908
DpnII	GATC	6 cut(s)	72, 137, 214, 451, 892, 906
Eam1104I	CTCTTC	1 cut(s)	436
EarI	CTCTTC	1 cut(s)	436
EciI	GGCGGA	1 cut(s)	79
Eco130I	CCWWGG	2 cut(s)	166, 185
Eco88I	CYCGRG	1 cut(s)	694
EcoRII	CCWGG	1 cut(s)	154
EcoT14I	CCWWGG	2 cut(s)	166, 185
ErhI	CCWWGG	2 cut(s)	166, 185
Esp3I	CGTCTC	2 cut(s)	118, 172
FaeI	CATG	3 cut(s)	189, 878, 907
FaiI	YATR	8 cut(s)	27, 187, 675, 817, 819, 876, 905, 918
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FaqI	GGGAC	1 cut(s)	701
FatI	CATG	3 cut(s)	185, 874, 903
FauI	CCCGC	1 cut(s)	532
FauNDI	CATATG	1 cut(s)	817
FbaI	TGATCA	1 cut(s)	906
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	9 cut(s)	201, 270, 291, 528, 924, 927, 930, 968, 996
FokI	GGATG	5 cut(s)	31, 73, 344, 444, 970
Fsp4HI	GCNGC	9 cut(s)	201, 270, 291, 528, 924, 927, 930, 968, 996
FspBI	CTAG	5 cut(s)	20, 167, 242, 629, 777
GluI	GCNGC	9 cut(s)	201, 270, 291, 528, 924, 927, 930, 968, 996
HaeIII	GGCC	2 cut(s)	132, 749
HapII	CCGG	6 cut(s)	117, 133, 175, 743, 771, 791
Hin1I	GRCGYC	1 cut(s)	181
Hin1II	CATG	3 cut(s)	189, 878, 907
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	171, 868
HpaII	CCGG	6 cut(s)	117, 133, 175, 743, 771, 791
HphI	GGTGA	1 cut(s)	863
Hpy166II	GTNNAC	3 cut(s)	6, 334, 352
Hpy188I	TCNGA	2 cut(s)	72, 811
Hpy188III	TCNNGA	5 cut(s)	175, 263, 743, 875, 910
Hpy8I	GTNNAC	3 cut(s)	6, 334, 352
HpyCH4III	ACNGT	2 cut(s)	441, 517
HpyCH4IV	ACGT	2 cut(s)	181, 232
HpyCH4V	TGCA	2 cut(s)	711, 1016
HpyF10VI	GCNNNNNNNGC	5 cut(s)	151, 266, 275, 803, 929
HpyF3I	CTNAG	1 cut(s)	1036
HpySE526I	ACGT	2 cut(s)	181, 232
Hsp92I	GRCGYC	1 cut(s)	181
Hsp92II	CATG	3 cut(s)	189, 878, 907
Kpn2I	TCCGGA	2 cut(s)	174, 742
Ksp22I	TGATCA	1 cut(s)	906
KspI	CCGCGG	1 cut(s)	528
Kzo9I	GATC	6 cut(s)	72, 137, 214, 451, 892, 906
LmnI	GCTCC	3 cut(s)	151, 773, 964
Lsp1109I	GCAGC	6 cut(s)	212, 256, 277, 910, 913, 982
MaeI	CTAG	5 cut(s)	20, 167, 242, 629, 777
MaeII	ACGT	2 cut(s)	181, 232
MaeIII	GTNAC	3 cut(s)	194, 233, 698
MalI	GATC	6 cut(s)	74, 139, 216, 453, 894, 908
MboI	GATC	6 cut(s)	72, 137, 214, 451, 892, 906
MflI	RGATCY	1 cut(s)	214
MlyI	GAGTC	1 cut(s)	180
MmeI	TCCRAC	2 cut(s)	242, 365
MroI	TCCGGA	2 cut(s)	174, 742
MseI	TTAA	2 cut(s)	659, 732
MspA1I	CMGCKG	1 cut(s)	527
MspI	CCGG	6 cut(s)	117, 133, 175, 743, 771, 791
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
MvnI	CGCG	1 cut(s)	527
MwoI	GCNNNNNNNGC	5 cut(s)	151, 266, 275, 803, 929
NcoI	CCATGG	1 cut(s)	185
NdeI	CATATG	1 cut(s)	817
NdeII	GATC	6 cut(s)	72, 137, 214, 451, 892, 906
NlaIII	CATG	3 cut(s)	189, 878, 907
NlaIV	GGNNCC	3 cut(s)	153, 164, 966
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	233
NspV	TTCGAA	1 cut(s)	843
PagI	TCATGA	1 cut(s)	874
PfeI	GAWTC	1 cut(s)	868
PkrI	GCNGC	9 cut(s)	202, 271, 292, 529, 925, 928, 931, 969, 997
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	3 cut(s)	153, 164, 966
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
SacII	CCGCGG	1 cut(s)	528
SaqAI	TTAA	2 cut(s)	659, 732
SatI	GCNGC	9 cut(s)	201, 270, 291, 528, 924, 927, 930, 968, 996
Sau3AI	GATC	6 cut(s)	72, 137, 214, 451, 892, 906
SchI	GAGTC	1 cut(s)	180
ScrFI	CCNGG	1 cut(s)	156
SfcI	CTRYAG	1 cut(s)	1023
Sfr303I	CCGCGG	1 cut(s)	528
SfuI	TTCGAA	1 cut(s)	843
SgrBI	CCGCGG	1 cut(s)	528
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
SsiI	CCGC	6 cut(s)	90, 149, 525, 527, 930, 968
SspMI	CTAG	5 cut(s)	20, 167, 242, 629, 777
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	2 cut(s)	166, 185
TaaI	ACNGT	2 cut(s)	441, 517
TaiI	ACGT	2 cut(s)	184, 235
TaqI	TCGA	4 cut(s)	252, 319, 450, 843
TauI	GCSGC	3 cut(s)	530, 932, 970
TfiI	GAWTC	1 cut(s)	868
Tru1I	TTAA	2 cut(s)	659, 732
Tru9I	TTAA	2 cut(s)	659, 732
TscAI	CASTG	2 cut(s)	242, 731
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	6 cut(s)	200, 269, 290, 923, 926, 995
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	881
TspRI	CASTG	2 cut(s)	242, 731
XmaJI	CCTAGG	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	333
XspI	CTAG	5 cut(s)	20, 167, 242, 629, 777
ZraI	GACGTC	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.