Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015366

Physical Location & Seq

Genomic Coordinates Forward (+)

21525559 .. 21526925

Gene Structure 1367 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g17630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGCCAATTTCCACCTCAAAAGCCATGGAAAAACCTCTCACCCAATCTGGTGAGAGATCAAGAGGGAGAAGGAAACAAGCTGAGCCAGGTAGGTTTCTTGGGGTGAGGAGAAGGCCTTGGGGTAGATATGCAGCTGAGATCAGAGACCCAAGTACTAAAGAGAGGCATTGGCTTGGGACGTTTGACACTGCTCAAGAAGCAGCTTTGGCTTATGACCGAGCTGCTTTGTCCATGAAAGGAGCTCAAGCAAGAACCAACTTCATTTACTCTGACAACTCCACTTTCCACTCTCTTCTAACACCCTTTGATGTTCAAACCCTATTGCCACAACAATCACTTGAGTTCTTCACTTCCACCACTACACAGACTCCTAGACAACAACAACAACCCACCCATCAGAACACTCCACCTGCTCAGTCCAGCATGTTTTATCAGAATGAGAGAAACCCCAACCTTAGGTCCAATGAAAAACCCTCATTTGATGCTCTCTTCTTCTCCAATGACTTTTCTTCTGATAATTCAGGTTACCTGGGTTGCATAGTTCCTGATAACTGCTTGAGGCCTCCTTCTGATATTCCCAAAAGCAGTGAGTTTACTACTACTCATGCTTTGGATATTGATCATCAGAATTTTAGCTTTACAAATTCCTCCATTCAAACTCAACCACATTGTGATCAAAGCAGTACTGCTACTACATTTCCTCTAGATGTAATGAATGTGCCAGCTTCGATAATGGCGTCTAGCAGTAACCCTGGAGATCAGCCTTCTTGCTTTGATGGATTCAGTCATGGATTCTGGGGTGATAACCAGCAGTACTCGTCATTGGATCAGTTAAACTCTAGAGAGCTTTCAACAATGGTGGACAGCAACCTATTCATGACTGAAGATGGGTGCAACATTGAAGCCTTGTATCCGATCATCGAAAATCAAAGTACTTCTTCGTTCTCTTGCTCCCCATCAGTTCATCCTTTTGGTGATGTAGTAATCGAGTTTGGCCATTCCCTCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0010015 GO:0010022 GO:0010073 GO:0010101 GO:0010102 GO:0010432 GO:0010451 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1900618 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

337

Amino Acids

37.55

Weight (kDa)

5.24

Isoelectric Point (pI)

60.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	33 - 80	7.4e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18560
fragaria_vesca	FvH4_4g17630
malus_domestica	MD13G1171200.v1.1 MD16G1172800.v1.1
prunus_persica	Prupe.1G139600_v2.0.a1
pyrus_communis	pycom16g14490
rosa_chinensis	RchiOBHm_Chr4g0421551
rosa_laevigata	RLG00000007668
rosa_multiflora	Rmu_sc0010734.1_g000007
rosa_roxburghii	Rroxscaffold_5G00363800
rosa_rugosa	Rorug04G0172700
rosa_samantha	Rh4AG233100 Rh4BG235800 Rh4CG247400 Rh4DG231700
rosa_wichuraiana	Rw4G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	418
Acc36I	ACCTGC	1 cut(s)	418
AclWI	GGATC	1 cut(s)	834
AcoI	YGGCCR	1 cut(s)	994
AcsI	RAATTY	2 cut(s)	628, 643
AcuI	CTGAAG	1 cut(s)	903
AcyI	GRCGYC	1 cut(s)	737
AdeI	CACNNNGTG	1 cut(s)	671
AfaI	GTAC	4 cut(s)	154, 685, 815, 934
AfiI	CCNNNNNNNGG	1 cut(s)	456
AgsI	TTSAA	4 cut(s)	314, 656, 852, 902
AjnI	CCWGG	3 cut(s)	85, 528, 751
AluBI	AGCT	8 cut(s)	80, 134, 203, 221, 242, 636, 725, 847
AluI	AGCT	8 cut(s)	80, 134, 203, 221, 242, 636, 725, 847
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	1 cut(s)	834
AoxI	GGCC	3 cut(s)	113, 560, 994
ApeKI	GCWGC	3 cut(s)	131, 200, 221
ApoI	RAATTY	2 cut(s)	628, 643
AspS9I	GGNCC	1 cut(s)	459
AsuHPI	GGTGA	5 cut(s)	31, 62, 115, 812, 986
AvaII	GGWCC	1 cut(s)	459
AxyI	CCTNAGG	1 cut(s)	455
BalI	TGGCCA	1 cut(s)	996
BanII	GRGCYC	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	3 cut(s)	143, 208, 212
BccI	CCATC	4 cut(s)	402, 770, 881, 964
BciT130I	CCWGG	3 cut(s)	87, 530, 753
BciVI	GTATCC	1 cut(s)	921
BclI	TGATCA	2 cut(s)	619, 673
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	4 cut(s)	372, 704, 741, 840
BfuAI	ACCTGC	1 cut(s)	418
BfuI	GTATCC	1 cut(s)	921
BisI	GCNGC	3 cut(s)	132, 201, 222
BlpI	GCTNAGC	1 cut(s)	81
BlsI	GCNGC	3 cut(s)	133, 202, 223
BmcAI	AGTACT	4 cut(s)	154, 685, 815, 934
Bme1390I	CCNGG	3 cut(s)	87, 530, 753
Bme18I	GGWCC	1 cut(s)	459
BmgT120I	GGNCC	1 cut(s)	459
BmrFI	CCNGG	3 cut(s)	87, 530, 753
BmsI	GCATC	1 cut(s)	472
BpmI	CTGGAG	1 cut(s)	774
Bpu1102I	GCTNAGC	1 cut(s)	81
BpuEI	CTTGAG	4 cut(s)	177, 228, 359, 577
BsaBI	GATNNNNATC	1 cut(s)	618
BsaHI	GRCGYC	1 cut(s)	737
BsaI	GGTCTC	1 cut(s)	138
BsaJI	CCNNGG	4 cut(s)	24, 116, 529, 751
BsaXI	ACNNNNNCTCC	2 cut(s)	352, 382
Bsc4I	CCNNNNNNNGG	1 cut(s)	456
Bse21I	CCTNAGG	1 cut(s)	455
Bse8I	GATNNNNATC	1 cut(s)	618
BseBI	CCWGG	3 cut(s)	87, 530, 753
BseDI	CCNNGG	4 cut(s)	24, 116, 529, 751
BseGI	GGATG	1 cut(s)	964
BseJI	GATNNNNATC	1 cut(s)	618
BseLI	CCNNNNNNNGG	1 cut(s)	456
BseMII	CTCAG	3 cut(s)	72, 126, 428
BseRI	GAGGAG	1 cut(s)	121
BseXI	GCAGC	3 cut(s)	143, 208, 212
BshFI	GGCC	3 cut(s)	115, 562, 996
BsiHKAI	GWGCWC	1 cut(s)	244
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	456
BsmAI	GTCTC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	190
BsnI	GGCC	3 cut(s)	115, 562, 996
Bso31I	GGTCTC	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	7 cut(s)	56, 138, 619, 673, 757, 826, 915
Bsp1720I	GCTNAGC	1 cut(s)	81
Bsp19I	CCATGG	1 cut(s)	24
BspANI	GGCC	3 cut(s)	115, 562, 996
BspCNI	CTCAG	3 cut(s)	73, 127, 427
BspHI	TCATGA	1 cut(s)	876
BspMI	ACCTGC	1 cut(s)	418
BspPI	GGATC	1 cut(s)	834
BspTNI	GGTCTC	1 cut(s)	138
BssECI	CCNNGG	4 cut(s)	24, 116, 529, 751
BssMI	GATC	7 cut(s)	56, 138, 619, 673, 757, 826, 915
BssNI	GRCGYC	1 cut(s)	737
BssT1I	CCWWGG	2 cut(s)	24, 116
Bst2UI	CCWGG	3 cut(s)	87, 530, 753
Bst6I	CTCTTC	2 cut(s)	297, 494
BstACI	GRCGYC	1 cut(s)	737
BstC8I	GCNNGC	1 cut(s)	723
BstDEI	CTNAG	4 cut(s)	81, 135, 414, 455
BstDSI	CCRYGG	1 cut(s)	24
BstEII	GGTNACC	1 cut(s)	524
BstF5I	GGATG	1 cut(s)	964
BstKTI	GATC	7 cut(s)	59, 141, 622, 676, 760, 829, 918
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	7 cut(s)	56, 138, 619, 673, 757, 826, 915
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 206
BstNI	CCWGG	3 cut(s)	87, 530, 753
BstNSI	RCATGY	1 cut(s)	427
BstPI	GGTNACC	1 cut(s)	524
BstSCI	CCNGG	3 cut(s)	85, 528, 751
BstV1I	GCAGC	3 cut(s)	143, 208, 212
Bsu36I	CCTNAGG	1 cut(s)	455
BsuI	GTATCC	1 cut(s)	921
BsuRI	GGCC	3 cut(s)	115, 562, 996
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	964
BtsI	GCAGTG	2 cut(s)	186, 592
BtsIMutI	CAGTG	2 cut(s)	186, 592
BveI	ACCTGC	1 cut(s)	418
Cac8I	GCNNGC	1 cut(s)	723
CciI	TCATGA	1 cut(s)	876
Cfr13I	GGNCC	1 cut(s)	459
CseI	GACGC	1 cut(s)	726
Csp6I	GTAC	4 cut(s)	153, 684, 814, 933
CspCI	CAANNNNNGTGG	2 cut(s)	840, 875
CviAII	CATG	6 cut(s)	25, 232, 424, 605, 788, 877
CviQI	GTAC	4 cut(s)	153, 684, 814, 933
DdeI	CTNAG	4 cut(s)	81, 135, 414, 455
DpnI	GATC	7 cut(s)	58, 140, 621, 675, 759, 828, 917
DpnII	GATC	7 cut(s)	56, 138, 619, 673, 757, 826, 915
DraIII	CACNNNGTG	1 cut(s)	671
EaeI	YGGCCR	1 cut(s)	994
Eam1104I	CTCTTC	2 cut(s)	297, 494
EarI	CTCTTC	2 cut(s)	297, 494
Ecl136II	GAGCTC	1 cut(s)	242
Eco130I	CCWWGG	2 cut(s)	24, 116
Eco147I	AGGCCT	2 cut(s)	115, 562
Eco24I	GRGCYC	1 cut(s)	244
Eco31I	GGTCTC	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	459
Eco53kI	GAGCTC	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	903
Eco81I	CCTNAGG	1 cut(s)	455
Eco91I	GGTNACC	1 cut(s)	524
EcoICRI	GAGCTC	1 cut(s)	242
EcoO65I	GGTNACC	1 cut(s)	524
EcoRII	CCWGG	3 cut(s)	85, 528, 751
EcoT14I	CCWWGG	2 cut(s)	24, 116
EcoT38I	GRGCYC	1 cut(s)	244
ErhI	CCWWGG	2 cut(s)	24, 116
FaeI	CATG	6 cut(s)	28, 235, 427, 608, 791, 880
FaiI	YATR	9 cut(s)	26, 129, 213, 233, 425, 539, 606, 789, 878
FalI	AAGNNNNNCTT	2 cut(s)	922, 954
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	6 cut(s)	24, 231, 423, 604, 787, 876
FbaI	TGATCA	2 cut(s)	619, 673
Fnu4HI	GCNGC	3 cut(s)	132, 201, 222
FokI	GGATG	1 cut(s)	951
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	3 cut(s)	132, 201, 222
FspBI	CTAG	4 cut(s)	372, 704, 741, 840
GluI	GCNGC	3 cut(s)	132, 201, 222
GsuI	CTGGAG	1 cut(s)	774
HaeIII	GGCC	3 cut(s)	115, 562, 996
HgaI	GACGC	1 cut(s)	726
Hin1I	GRCGYC	1 cut(s)	737
Hin1II	CATG	6 cut(s)	28, 235, 427, 608, 791, 880
HinfI	GANTC	3 cut(s)	367, 780, 792
HphI	GGTGA	5 cut(s)	31, 62, 115, 812, 986
Hpy166II	GTNNAC	2 cut(s)	594, 862
Hpy188I	TCNGA	8 cut(s)	143, 271, 399, 435, 514, 571, 627, 915
Hpy188III	TCNNGA	6 cut(s)	60, 194, 545, 704, 840, 877
Hpy8I	GTNNAC	2 cut(s)	594, 862
HpyAV	CCTTC	4 cut(s)	63, 105, 576, 774
HpyCH4IV	ACGT	1 cut(s)	179
HpyCH4V	TGCA	3 cut(s)	131, 537, 894
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 206
HpyF3I	CTNAG	4 cut(s)	81, 135, 414, 455
HpySE526I	ACGT	1 cut(s)	179
Hsp92I	GRCGYC	1 cut(s)	737
Hsp92II	CATG	6 cut(s)	28, 235, 427, 608, 791, 880
Ksp22I	TGATCA	2 cut(s)	619, 673
Kzo9I	GATC	7 cut(s)	56, 138, 619, 673, 757, 826, 915
LmnI	GCTCC	2 cut(s)	239, 956
Lsp1109I	GCAGC	3 cut(s)	143, 208, 212
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	4 cut(s)	372, 704, 741, 840
MaeII	ACGT	1 cut(s)	179
MaeIII	GTNAC	2 cut(s)	524, 746
MalI	GATC	7 cut(s)	58, 140, 621, 675, 759, 828, 917
MboI	GATC	7 cut(s)	56, 138, 619, 673, 757, 826, 915
MboII	GAAGA	7 cut(s)	284, 337, 481, 484, 501, 896, 930
MhlI	GDGCHC	1 cut(s)	244
MlsI	TGGCCA	1 cut(s)	996
MluCI	AATT	4 cut(s)	6, 517, 628, 643
MluNI	TGGCCA	1 cut(s)	996
MlyI	GAGTC	1 cut(s)	361
Mox20I	TGGCCA	1 cut(s)	996
MscI	TGGCCA	1 cut(s)	996
MseI	TTAA	1 cut(s)	833
Msp20I	TGGCCA	1 cut(s)	996
MspA1I	CMGCKG	1 cut(s)	134
MspR9I	CCNGG	3 cut(s)	87, 530, 753
MvaI	CCWGG	3 cut(s)	87, 530, 753
MwoI	GCNNNNNNNGC	2 cut(s)	197, 206
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	7 cut(s)	56, 138, 619, 673, 757, 826, 915
NlaIII	CATG	6 cut(s)	28, 235, 427, 608, 791, 880
NspI	RCATGY	1 cut(s)	427
PagI	TCATGA	1 cut(s)	876
PaqCI	CACCTGC	1 cut(s)	418
PceI	AGGCCT	2 cut(s)	115, 562
PcsI	WCGNNNNNNNCGW	1 cut(s)	734
PfeI	GAWTC	2 cut(s)	780, 792
PkrI	GCNGC	3 cut(s)	133, 202, 223
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Psp124BI	GAGCTC	1 cut(s)	244
Psp6I	CCWGG	3 cut(s)	85, 528, 751
PspEI	GGTNACC	1 cut(s)	524
PspGI	CCWGG	3 cut(s)	85, 528, 751
PspPI	GGNCC	1 cut(s)	459
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	4 cut(s)	154, 685, 815, 934
RsaNI	GTAC	4 cut(s)	153, 684, 814, 933
SacI	GAGCTC	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	833
SatI	GCNGC	3 cut(s)	132, 201, 222
Sau3AI	GATC	7 cut(s)	56, 138, 619, 673, 757, 826, 915
Sau96I	GGNCC	1 cut(s)	459
ScaI	AGTACT	4 cut(s)	154, 685, 815, 934
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	3 cut(s)	87, 530, 753
SduI	GDGCHC	1 cut(s)	244
SfaNI	GCATC	1 cut(s)	472
SinI	GGWCC	1 cut(s)	459
SmlI	CTYRAG	4 cut(s)	192, 243, 338, 556
SmoI	CTYRAG	4 cut(s)	192, 243, 338, 556
Sse9I	AATT	4 cut(s)	6, 517, 628, 643
SseBI	AGGCCT	2 cut(s)	115, 562
SspMI	CTAG	4 cut(s)	372, 704, 741, 840
SstI	GAGCTC	1 cut(s)	244
StuI	AGGCCT	2 cut(s)	115, 562
StyD4I	CCNGG	3 cut(s)	85, 528, 751
StyI	CCWWGG	2 cut(s)	24, 116
TaiI	ACGT	1 cut(s)	182
TaqI	TCGA	3 cut(s)	728, 921, 987
TaqII	GACCGA	1 cut(s)	231
TasI	AATT	4 cut(s)	6, 517, 628, 643
TatI	WGTACW	4 cut(s)	152, 683, 813, 932
TfiI	GAWTC	2 cut(s)	780, 792
Tru1I	TTAA	1 cut(s)	833
Tru9I	TTAA	1 cut(s)	833
TscAI	CASTG	2 cut(s)	193, 592
TseI	GCWGC	3 cut(s)	131, 200, 221
TspDTI	ATGAA	6 cut(s)	248, 250, 480, 728, 865, 953
TspRI	CASTG	2 cut(s)	193, 592
VpaK11BI	GGWCC	1 cut(s)	459
XapI	RAATTY	2 cut(s)	628, 643
XbaI	TCTAGA	2 cut(s)	703, 839
XceI	RCATGY	1 cut(s)	427
XspI	CTAG	4 cut(s)	372, 704, 741, 840
ZrmI	AGTACT	4 cut(s)	154, 685, 815, 934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.