Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015366

Physical Location & Seq

Genomic Coordinates Forward (+)

47196100 .. 47197443

Gene Structure 1344 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39119

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGCCAATTTCCACCTCAAAAGCCATGGAAAAACCTCTTAGCCAATCTGGTGAGAGATCAAGAGGGAGAAGGAAGCAAGCAGAGCCAGGTAGGTTTCTTGGGGTGAGGAGAAGGCCTTGGGGTAGATATGCAGCCGAGATTAGAGACCCAAGTACTAAAGAGAGGCATTGGCTTGGGACATTTGACACTGCTCAAGAAGCAGCTCTGGCTTATGACAGAGCTGCTTTGTCCATGAAAGGAGCTCAAGCAAGAACCAACTTCATTTACTCTGACAACTCCACTTTCCACTCTCTTCTTACACCCTTTGATGTTCAAACCCTATTGCCACAACAATCACTTGAGTTCTTCACTTCCACTACTACACAGACTCCTAGACAACAACAACCCACCAATCAGAACAGTCCACCTGGTCAGTCCAGCATGTTTTATCAGAATGAGAGAAACCCAAATATTAGGTCCAATAATGAAAAACCCTCATTTGATAGTCTCTTCTTCTCCAATGACTTTTCTTCTGATAACTCAGGTTACTTGGGTTGCATAGTTCCTGATAACTGCTTGAGGCCTCCTTGTGATATTCCCAGAAGCAGTGACCTTACTACTACTACTCATACTTTGAATATTGATCATCAGAATTTTAGTTTTCCAAACACTGCAAACTCCTCCATTCAAACTCAACCACATTGTGATCAAAGCAGTACTGCTACTACATTTCCTCTAGATGTAATGAATGTGCCAGCTTCGATAATGGCGTCTAGCAGTAACCCCGGAGATCAGCTTTCTTGCTTTGAGGGATTCAGTCATGGATTCTGGGGGGATAACCAGCAGTACTCATCATGGGATCAGTTGAATTATAGAGAGCTTTCAACAATGATGGATAACAACCCATTGATGACTGAAGATGGGTGCAACATTGGAGCTTTGTATCCGATCATCGAAAATCCTAGTTCTTCTTCGTTCTCTTGCTCCCCATCAGTTCATCCTCCTATTGGTGATGTATGTAACTACCCAAAGAAAAACCTCCCTTTTGGGGAGGAGATTTGGGATATGCTTATCATGGTTCAGCAGGCTTTAATGGAAACTGTTGGGATCGATATTAAATCAGCTTTTTCGAGTCTTACTGTTCTTTGCATCCCATTTGAAAATGGTGCCTGCTTAGCTAGCTTAGTAGTCTCTTTATGGCTGTACTGGCCTTCACATATATTAATAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0010015 GO:0010022 GO:0010073 GO:0010101 GO:0010102 GO:0010432 GO:0010451 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1900618 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

403

Amino Acids

45.0

Weight (kDa)

5.14

Isoelectric Point (pI)

59.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	33 - 80	9.6e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18560
fragaria_vesca	FvH4_4g17630
malus_domestica	MD13G1171200.v1.1 MD16G1172800.v1.1
prunus_persica	Prupe.1G139600_v2.0.a1
pyrus_communis	pycom16g14490
rosa_chinensis	RchiOBHm_Chr4g0421551
rosa_laevigata	RLG00000007668
rosa_multiflora	Rmu_sc0010734.1_g000007
rosa_roxburghii	Rroxscaffold_5G00363800
rosa_rugosa	Rorug04G0172700
rosa_samantha	Rh4AG233100 Rh4BG235800 Rh4CG247400 Rh4DG231700
rosa_wichuraiana	Rw4G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1145
AclWI	GGATC	2 cut(s)	846, 1094
AcsI	RAATTY	1 cut(s)	631
AcuI	CTGAAG	1 cut(s)	915
AcyI	GRCGYC	1 cut(s)	749
AdeI	CACNNNGTG	1 cut(s)	683
AfaI	GTAC	4 cut(s)	154, 697, 827, 1184
AfiI	CCNNNNNNNGG	2 cut(s)	986, 1027
AgsI	TTSAA	6 cut(s)	314, 616, 668, 847, 864, 1139
AjnI	CCWGG	2 cut(s)	85, 406
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	3 cut(s)	138, 491, 1174
AlwI	GGATC	2 cut(s)	846, 1094
AoxI	GGCC	3 cut(s)	113, 560, 1187
ApeKI	GCWGC	3 cut(s)	131, 200, 221
ApoI	RAATTY	1 cut(s)	631
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
AseI	ATTAAT	1 cut(s)	1202
AspS9I	GGNCC	1 cut(s)	456
AsuC2I	CCSGG	1 cut(s)	765
AsuHPI	GGTGA	3 cut(s)	62, 115, 1001
AsuNHI	GCTAGC	1 cut(s)	1157
AvaII	GGWCC	1 cut(s)	456
BanI	GGYRCC	1 cut(s)	1145
BanII	GRGCYC	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	3 cut(s)	143, 208, 212
BccI	CCATC	3 cut(s)	865, 893, 976
BciT130I	CCWGG	2 cut(s)	87, 408
BciVI	GTATCC	1 cut(s)	933
BclI	TGATCA	2 cut(s)	622, 685
BcnI	CCSGG	1 cut(s)	765
BcoDI	GTCTC	3 cut(s)	138, 491, 1174
BfaI	CTAG	5 cut(s)	372, 716, 753, 942, 1158
BfuI	GTATCC	1 cut(s)	933
BisI	GCNGC	3 cut(s)	132, 201, 222
BlpI	GCTNAGC	1 cut(s)	1153
BlsI	GCNGC	3 cut(s)	133, 202, 223
BmcAI	AGTACT	3 cut(s)	154, 697, 827
Bme1390I	CCNGG	3 cut(s)	87, 408, 765
Bme18I	GGWCC	1 cut(s)	456
BmgT120I	GGNCC	1 cut(s)	456
BmiI	GGNNCC	1 cut(s)	1147
BmrFI	CCNGG	3 cut(s)	87, 408, 765
BmsI	GCATC	1 cut(s)	1137
BmtI	GCTAGC	1 cut(s)	1161
Bpu1102I	GCTNAGC	1 cut(s)	1153
BpuEI	CTTGAG	4 cut(s)	177, 228, 359, 577
BpuMI	CCSGG	1 cut(s)	765
Bsa29I	ATCGAT	1 cut(s)	1089
BsaHI	GRCGYC	1 cut(s)	749
BsaI	GGTCTC	1 cut(s)	138
BsaJI	CCNNGG	3 cut(s)	24, 116, 763
BsaXI	ACNNNNNCTCC	2 cut(s)	352, 382
Bsc4I	CCNNNNNNNGG	2 cut(s)	986, 1027
Bse1I	ACTGG	1 cut(s)	1190
BseBI	CCWGG	2 cut(s)	87, 408
BseCI	ATCGAT	1 cut(s)	1089
BseDI	CCNNGG	3 cut(s)	24, 116, 763
BseGI	GGATG	2 cut(s)	976, 1128
BseLI	CCNNNNNNNGG	2 cut(s)	986, 1027
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	1 cut(s)	1190
BseRI	GAGGAG	3 cut(s)	121, 649, 1046
BseXI	GCAGC	3 cut(s)	143, 208, 212
BshFI	GGCC	3 cut(s)	115, 562, 1189
BshNI	GGYRCC	1 cut(s)	1145
BshVI	ATCGAT	1 cut(s)	1089
BsiHKAI	GWGCWC	1 cut(s)	244
BsiSI	CCGG	1 cut(s)	765
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	2 cut(s)	986, 1027
BsmAI	GTCTC	3 cut(s)	138, 491, 1174
BsmFI	GGGAC	1 cut(s)	190
BsnI	GGCC	3 cut(s)	115, 562, 1189
Bso31I	GGTCTC	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	7 cut(s)	56, 622, 685, 769, 838, 927, 1086
Bsp1720I	GCTNAGC	1 cut(s)	1153
Bsp19I	CCATGG	1 cut(s)	24
BspANI	GGCC	3 cut(s)	115, 562, 1189
BspCNI	CTCAG	1 cut(s)	533
BspDI	ATCGAT	1 cut(s)	1089
BspLI	GGNNCC	1 cut(s)	1147
BspOI	GCTAGC	1 cut(s)	1161
BspPI	GGATC	2 cut(s)	846, 1094
BspT107I	GGYRCC	1 cut(s)	1145
BspTNI	GGTCTC	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	1190
BssECI	CCNNGG	3 cut(s)	24, 116, 763
BssMI	GATC	7 cut(s)	56, 622, 685, 769, 838, 927, 1086
BssNI	GRCGYC	1 cut(s)	749
BssT1I	CCWWGG	2 cut(s)	24, 116
Bst2UI	CCWGG	2 cut(s)	87, 408
Bst4CI	ACNGT	3 cut(s)	401, 1081, 1120
Bst6I	CTCTTC	2 cut(s)	297, 494
BstACI	GRCGYC	1 cut(s)	749
BstC8I	GCNNGC	5 cut(s)	78, 735, 1065, 1150, 1159
BstDEI	CTNAG	4 cut(s)	38, 520, 1153, 1162
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	976, 1128
BstKTI	GATC	7 cut(s)	59, 625, 688, 772, 841, 930, 1089
BstMAI	GTCTC	3 cut(s)	138, 491, 1174
BstMBI	GATC	7 cut(s)	56, 622, 685, 769, 838, 927, 1086
BstMWI	GCNNNNNNNGC	6 cut(s)	82, 197, 206, 1154, 1158, 1186
BstNI	CCWGG	2 cut(s)	87, 408
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	3 cut(s)	85, 406, 763
BstV1I	GCAGC	3 cut(s)	143, 208, 212
Bsu15I	ATCGAT	1 cut(s)	1089
BsuI	GTATCC	1 cut(s)	933
BsuRI	GGCC	3 cut(s)	115, 562, 1189
BsuTUI	ATCGAT	1 cut(s)	1089
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	976, 1128
BtsI	GCAGTG	3 cut(s)	186, 592, 648
BtsIMutI	CAGTG	3 cut(s)	186, 592, 648
Cac8I	GCNNGC	5 cut(s)	78, 735, 1065, 1150, 1159
Cfr13I	GGNCC	1 cut(s)	456
ClaI	ATCGAT	1 cut(s)	1089
CseI	GACGC	1 cut(s)	738
CsiI	ACCWGGT	1 cut(s)	406
Csp6I	GTAC	4 cut(s)	153, 696, 826, 1183
CviAII	CATG	6 cut(s)	25, 232, 421, 800, 834, 1054
CviQI	GTAC	4 cut(s)	153, 696, 826, 1183
DdeI	CTNAG	4 cut(s)	38, 520, 1153, 1162
DpnI	GATC	7 cut(s)	58, 624, 687, 771, 840, 929, 1088
DpnII	GATC	7 cut(s)	56, 622, 685, 769, 838, 927, 1086
DraIII	CACNNNGTG	1 cut(s)	683
Eam1104I	CTCTTC	2 cut(s)	297, 494
EarI	CTCTTC	2 cut(s)	297, 494
Ecl136II	GAGCTC	1 cut(s)	242
Eco130I	CCWWGG	2 cut(s)	24, 116
Eco147I	AGGCCT	2 cut(s)	115, 562
Eco24I	GRGCYC	1 cut(s)	244
Eco31I	GGTCTC	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	456
Eco53kI	GAGCTC	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	915
EcoICRI	GAGCTC	1 cut(s)	242
EcoRII	CCWGG	2 cut(s)	85, 406
EcoT14I	CCWWGG	2 cut(s)	24, 116
EcoT38I	GRGCYC	1 cut(s)	244
ErhI	CCWWGG	2 cut(s)	24, 116
FaeI	CATG	6 cut(s)	28, 235, 424, 803, 837, 1057
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	6 cut(s)	24, 231, 420, 799, 833, 1053
FbaI	TGATCA	2 cut(s)	622, 685
Fnu4HI	GCNGC	3 cut(s)	132, 201, 222
FokI	GGATG	2 cut(s)	963, 1115
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	3 cut(s)	132, 201, 222
FspBI	CTAG	5 cut(s)	372, 716, 753, 942, 1158
GluI	GCNGC	3 cut(s)	132, 201, 222
HaeIII	GGCC	3 cut(s)	115, 562, 1189
HapII	CCGG	1 cut(s)	765
HgaI	GACGC	1 cut(s)	738
Hin1I	GRCGYC	1 cut(s)	749
Hin1II	CATG	6 cut(s)	28, 235, 424, 803, 837, 1057
HinfI	GANTC	4 cut(s)	367, 792, 804, 1111
HpaII	CCGG	1 cut(s)	765
HphI	GGTGA	3 cut(s)	62, 115, 1001
Hpy166II	GTNNAC	1 cut(s)	404
Hpy188I	TCNGA	6 cut(s)	271, 396, 432, 514, 630, 927
Hpy188III	TCNNGA	4 cut(s)	60, 194, 545, 716
Hpy8I	GTNNAC	1 cut(s)	404
HpyAV	CCTTC	3 cut(s)	63, 105, 1200
HpyCH4III	ACNGT	3 cut(s)	401, 1081, 1120
HpyCH4V	TGCA	5 cut(s)	131, 537, 653, 906, 1128
HpyF10VI	GCNNNNNNNGC	6 cut(s)	82, 197, 206, 1154, 1158, 1186
HpyF3I	CTNAG	4 cut(s)	38, 520, 1153, 1162
Hsp92I	GRCGYC	1 cut(s)	749
Hsp92II	CATG	6 cut(s)	28, 235, 424, 803, 837, 1057
Ksp22I	TGATCA	2 cut(s)	622, 685
Kzo9I	GATC	7 cut(s)	56, 622, 685, 769, 838, 927, 1086
LmnI	GCTCC	3 cut(s)	239, 914, 968
Lsp1109I	GCAGC	3 cut(s)	143, 208, 212
LweI	GCATC	1 cut(s)	1137
MabI	ACCWGGT	1 cut(s)	406
MaeI	CTAG	5 cut(s)	372, 716, 753, 942, 1158
MaeIII	GTNAC	4 cut(s)	524, 587, 758, 998
MalI	GATC	7 cut(s)	58, 624, 687, 771, 840, 929, 1088
MboI	GATC	7 cut(s)	56, 622, 685, 769, 838, 927, 1086
MboII	GAAGA	8 cut(s)	284, 337, 481, 484, 501, 908, 939, 942
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	3 cut(s)	6, 631, 847
MlyI	GAGTC	2 cut(s)	361, 1120
MseI	TTAA	3 cut(s)	1070, 1095, 1202
MspI	CCGG	1 cut(s)	765
MspR9I	CCNGG	3 cut(s)	87, 408, 765
MvaI	CCWGG	2 cut(s)	87, 408
MwoI	GCNNNNNNNGC	6 cut(s)	82, 197, 206, 1154, 1158, 1186
NciI	CCSGG	1 cut(s)	765
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	7 cut(s)	56, 622, 685, 769, 838, 927, 1086
NheI	GCTAGC	1 cut(s)	1157
NlaIII	CATG	6 cut(s)	28, 235, 424, 803, 837, 1057
NlaIV	GGNNCC	1 cut(s)	1147
NmeAIII	GCCGAG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	587
NspI	RCATGY	1 cut(s)	424
PceI	AGGCCT	2 cut(s)	115, 562
PcsI	WCGNNNNNNNCGW	1 cut(s)	746
PfeI	GAWTC	2 cut(s)	792, 804
PkrI	GCNGC	3 cut(s)	133, 202, 223
PleI	GAGTC	2 cut(s)	361, 1119
PpsI	GAGTC	2 cut(s)	361, 1119
PshBI	ATTAAT	1 cut(s)	1202
Psp124BI	GAGCTC	1 cut(s)	244
Psp6I	CCWGG	2 cut(s)	85, 406
PspGI	CCWGG	2 cut(s)	85, 406
PspN4I	GGNNCC	1 cut(s)	1147
PspPI	GGNCC	1 cut(s)	456
RsaI	GTAC	4 cut(s)	154, 697, 827, 1184
RsaNI	GTAC	4 cut(s)	153, 696, 826, 1183
SacI	GAGCTC	1 cut(s)	244
SaqAI	TTAA	3 cut(s)	1070, 1095, 1202
SatI	GCNGC	3 cut(s)	132, 201, 222
Sau3AI	GATC	7 cut(s)	56, 622, 685, 769, 838, 927, 1086
Sau96I	GGNCC	1 cut(s)	456
ScaI	AGTACT	3 cut(s)	154, 697, 827
SchI	GAGTC	2 cut(s)	361, 1120
ScrFI	CCNGG	3 cut(s)	87, 408, 765
SduI	GDGCHC	1 cut(s)	244
SexAI	ACCWGGT	1 cut(s)	406
SfaNI	GCATC	1 cut(s)	1137
SinI	GGWCC	1 cut(s)	456
SmlI	CTYRAG	4 cut(s)	192, 243, 338, 556
SmoI	CTYRAG	4 cut(s)	192, 243, 338, 556
Sse9I	AATT	3 cut(s)	6, 631, 847
SseBI	AGGCCT	2 cut(s)	115, 562
SspI	AATATT	2 cut(s)	451, 619
SspMI	CTAG	5 cut(s)	372, 716, 753, 942, 1158
SstI	GAGCTC	1 cut(s)	244
StuI	AGGCCT	2 cut(s)	115, 562
StyD4I	CCNGG	3 cut(s)	85, 406, 763
StyI	CCWWGG	2 cut(s)	24, 116
TaaI	ACNGT	3 cut(s)	401, 1081, 1120
TaqI	TCGA	4 cut(s)	740, 933, 1089, 1109
TasI	AATT	3 cut(s)	6, 631, 847
TatI	WGTACW	4 cut(s)	152, 695, 825, 1182
TfiI	GAWTC	2 cut(s)	792, 804
Tru1I	TTAA	3 cut(s)	1070, 1095, 1202
Tru9I	TTAA	3 cut(s)	1070, 1095, 1202
TscAI	CASTG	3 cut(s)	193, 592, 655
TseFI	GTSAC	1 cut(s)	587
TseI	GCWGC	3 cut(s)	131, 200, 221
Tsp45I	GTSAC	1 cut(s)	587
TspDTI	ATGAA	5 cut(s)	248, 250, 480, 740, 965
TspRI	CASTG	3 cut(s)	193, 592, 655
VpaK11BI	GGWCC	1 cut(s)	456
VspI	ATTAAT	1 cut(s)	1202
XapI	RAATTY	1 cut(s)	631
XbaI	TCTAGA	1 cut(s)	715
XceI	RCATGY	1 cut(s)	424
XspI	CTAG	5 cut(s)	372, 716, 753, 942, 1158
ZrmI	AGTACT	3 cut(s)	154, 697, 827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.