Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0015366

Physical Location & Seq

Genomic Coordinates Reverse (-)

10571374 .. 10572186

Gene Structure 813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g14490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTCAATGTCTACCTCCAAAACCCTAGAAAAACCCTTCAAAGCTTTTGAGCAAGGTCAGGCACAGGTGGGTTTTGCTGCTGTACTGCAGAGAAGCACACCTCCTCCGTCCTCTCAATCCGGTGAGAGAAGAGGAAGGCGAAAGCAGGCCGAGCCAGGGAGGTTTCTTGGTGTGAGGAGAAGGCCTTGGGGGAGATATGCAGCTGAAATCAGAGACCCTAGCACTAAAGAAAGGCACTGGCTTGGCACATTTGACACTGCTCAAGAAGCAGCTTTTGCTTATGACAGAGCTGCCCTCTCCATGAAAGGCTCACAAGCAAGAACCAACTTCATTTACTCTGACAACACAACTTTCCAATCTTTCCTCTCACCCTTTGATGTCCAAACCCTTTTACCACAGCAATCACAGTTTTTCACCACTCAGACCGCTAAACAACAACTCACCAATCAAAACAGTCCACCTCATCATTCTAACATTTTTCAGTCTGATCAAATCCAATTTCAAAACCCTACTAATATTAGGTCATCATCATCGGCACATGATGAGGATGATGAGGGTTTCTTTTTCTCTGGCGATTCGAGTAATTCTAACTCGGGCTATTTGGCCTGCATTGTTCCTGATAGTTGCCTGAGGCCTCCTTCGGATAATCACCACCCCACAAATTACACAAACTCAAAAGCTTTGAAAATTGATCAAAATTGTAGTTTTGCAAACCCTAATAACTCCACTAGTGCTACATTTCCTCTAGATGTTGCGCATGTGCAAGCAGCTTCTAATAACAACAATGGAGATCGATCAGATTCCTTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0010015 GO:0010022 GO:0010073 GO:0010101 GO:0010102 GO:0010432 GO:0010451 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1900618 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

271

Amino Acids

29.98

Weight (kDa)

7.78

Isoelectric Point (pI)

62.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	56 - 103	6e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18560
fragaria_vesca	FvH4_4g17630
malus_domestica	MD13G1171200.v1.1 MD16G1172800.v1.1
prunus_persica	Prupe.1G139600_v2.0.a1
pyrus_communis	pycom16g14490
rosa_chinensis	RchiOBHm_Chr4g0421551
rosa_laevigata	RLG00000007668
rosa_multiflora	Rmu_sc0010734.1_g000007
rosa_roxburghii	Rroxscaffold_5G00363800
rosa_rugosa	Rorug04G0172700
rosa_samantha	Rh4AG233100 Rh4BG235800 Rh4CG247400 Rh4DG231700
rosa_wichuraiana	Rw4G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	756
AccI	GTMKAC	1 cut(s)	11
AciI	CCGC	1 cut(s)	426
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	1 cut(s)	156
AgsI	TTSAA	3 cut(s)	40, 503, 685
AhlI	ACTAGT	1 cut(s)	728
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	6 cut(s)	44, 203, 272, 290, 680, 770
AluI	AGCT	6 cut(s)	44, 203, 272, 290, 680, 770
Alw26I	GTCTC	1 cut(s)	207
Ama87I	CYCGRG	1 cut(s)	592
AoxI	GGCC	4 cut(s)	147, 182, 603, 632
ApeKI	GCWGC	5 cut(s)	77, 200, 269, 290, 767
AspLEI	GCGC	1 cut(s)	757
AsuHPI	GGTGA	5 cut(s)	134, 360, 406, 433, 641
AvaI	CYCGRG	1 cut(s)	592
AxyI	CCTNAGG	1 cut(s)	629
BbvI	GCAGC	5 cut(s)	64, 212, 277, 281, 779
BciT130I	CCWGG	1 cut(s)	156
BclI	TGATCA	2 cut(s)	487, 691
BcoDI	GTCTC	1 cut(s)	207
BcuI	ACTAGT	1 cut(s)	728
BfaI	CTAG	4 cut(s)	26, 219, 729, 746
BfmI	CTRYAG	1 cut(s)	86
BisI	GCNGC	5 cut(s)	78, 201, 270, 291, 768
BlsI	GCNGC	5 cut(s)	79, 202, 271, 292, 769
Bme1390I	CCNGG	1 cut(s)	156
BmeT110I	CYCGRG	1 cut(s)	592
BmrFI	CCNGG	1 cut(s)	156
BplI	GAGNNNNNCTC	2 cut(s)	279, 311
BpuEI	CTTGAG	1 cut(s)	246
Bsa29I	ATCGAT	1 cut(s)	793
BsaI	GGTCTC	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	155, 185
BsaWI	WCCGGW	1 cut(s)	119
BsaXI	ACNNNNNCTCC	2 cut(s)	88, 118
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse1I	ACTGG	1 cut(s)	242
Bse21I	CCTNAGG	1 cut(s)	629
BseBI	CCWGG	1 cut(s)	156
BseCI	ATCGAT	1 cut(s)	793
BseDI	CCNNGG	2 cut(s)	155, 185
BseGI	GGATG	1 cut(s)	553
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMII	CTCAG	2 cut(s)	434, 620
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	2 cut(s)	93, 190
BseXI	GCAGC	5 cut(s)	64, 212, 277, 281, 779
BshFI	GGCC	4 cut(s)	149, 184, 605, 634
BshVI	ATCGAT	1 cut(s)	793
BsiHKCI	CYCGRG	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	207
BsnI	GGCC	4 cut(s)	149, 184, 605, 634
Bso31I	GGTCTC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	592
Bsp143I	GATC	4 cut(s)	487, 691, 790, 794
BspACI	CCGC	1 cut(s)	426
BspANI	GGCC	4 cut(s)	149, 184, 605, 634
BspCNI	CTCAG	2 cut(s)	433, 621
BspDI	ATCGAT	1 cut(s)	793
BspMAI	CTGCAG	1 cut(s)	90
BspTNI	GGTCTC	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	2 cut(s)	155, 185
BssMI	GATC	4 cut(s)	487, 691, 790, 794
BssT1I	CCWWGG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	408, 455
Bst6I	CTCTTC	1 cut(s)	124
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstC8I	GCNNGC	3 cut(s)	147, 607, 765
BstDEI	CTNAG	2 cut(s)	420, 629
BstF5I	GGATG	1 cut(s)	553
BstHHI	GCGC	1 cut(s)	757
BstKTI	GATC	4 cut(s)	490, 694, 793, 797
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	4 cut(s)	487, 691, 790, 794
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 266, 275
BstNI	CCWGG	1 cut(s)	156
BstNSI	RCATGY	1 cut(s)	761
BstSCI	CCNGG	1 cut(s)	154
BstSFI	CTRYAG	1 cut(s)	86
BstV1I	GCAGC	5 cut(s)	64, 212, 277, 281, 779
Bsu15I	ATCGAT	1 cut(s)	793
Bsu36I	CCTNAGG	1 cut(s)	629
BsuRI	GGCC	4 cut(s)	149, 184, 605, 634
BsuTUI	ATCGAT	1 cut(s)	793
BtsCI	GGATG	1 cut(s)	553
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	235, 255
Cac8I	GCNNGC	3 cut(s)	147, 607, 765
CfoI	GCGC	1 cut(s)	757
ClaI	ATCGAT	1 cut(s)	793
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	3 cut(s)	301, 539, 758
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	2 cut(s)	420, 629
DpnI	GATC	4 cut(s)	489, 693, 792, 796
DpnII	GATC	4 cut(s)	487, 691, 790, 794
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	185
Eco147I	AGGCCT	2 cut(s)	184, 634
Eco31I	GGTCTC	1 cut(s)	207
Eco81I	CCTNAGG	1 cut(s)	629
Eco88I	CYCGRG	1 cut(s)	592
EcoRII	CCWGG	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	185
FaeI	CATG	3 cut(s)	304, 542, 761
FaiI	YATR	5 cut(s)	198, 282, 302, 540, 759
FatI	CATG	3 cut(s)	300, 538, 757
FbaI	TGATCA	2 cut(s)	487, 691
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	5 cut(s)	78, 201, 270, 291, 768
FokI	GGATG	1 cut(s)	560
Fsp4HI	GCNGC	5 cut(s)	78, 201, 270, 291, 768
FspBI	CTAG	4 cut(s)	26, 219, 729, 746
FspI	TGCGCA	1 cut(s)	756
GlaI	GCGC	1 cut(s)	756
GluI	GCNGC	5 cut(s)	78, 201, 270, 291, 768
HaeIII	GGCC	4 cut(s)	149, 184, 605, 634
HapII	CCGG	1 cut(s)	120
HhaI	GCGC	1 cut(s)	757
Hin1II	CATG	3 cut(s)	304, 542, 761
Hin6I	GCGC	1 cut(s)	755
HinP1I	GCGC	1 cut(s)	755
HindIII	AAGCTT	2 cut(s)	42, 678
HinfI	GANTC	2 cut(s)	575, 800
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	5 cut(s)	134, 360, 406, 433, 641
Hpy166II	GTNNAC	2 cut(s)	12, 458
Hpy188I	TCNGA	6 cut(s)	212, 340, 423, 487, 643, 799
Hpy188III	TCNNGA	3 cut(s)	263, 617, 746
Hpy8I	GTNNAC	2 cut(s)	12, 458
HpyAV	CCTTC	4 cut(s)	46, 129, 174, 648
HpyCH4III	ACNGT	2 cut(s)	408, 455
HpyCH4V	TGCA	5 cut(s)	88, 200, 609, 710, 763
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 266, 275
HpyF3I	CTNAG	2 cut(s)	420, 629
Hsp92II	CATG	3 cut(s)	304, 542, 761
HspAI	GCGC	1 cut(s)	755
Ksp22I	TGATCA	2 cut(s)	487, 691
Kzo9I	GATC	4 cut(s)	487, 691, 790, 794
Lsp1109I	GCAGC	5 cut(s)	64, 212, 277, 281, 779
MaeI	CTAG	4 cut(s)	26, 219, 729, 746
MalI	GATC	4 cut(s)	489, 693, 792, 796
MboI	GATC	4 cut(s)	487, 691, 790, 794
MboII	GAAGA	1 cut(s)	141
MluCI	AATT	5 cut(s)	497, 583, 661, 687, 697
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	3 cut(s)	151, 266, 275
NdeII	GATC	4 cut(s)	487, 691, 790, 794
NlaIII	CATG	3 cut(s)	304, 542, 761
NmeAIII	GCCGAG	1 cut(s)	175
NsbI	TGCGCA	1 cut(s)	756
NspI	RCATGY	1 cut(s)	761
PceI	AGGCCT	2 cut(s)	184, 634
PfeI	GAWTC	2 cut(s)	575, 800
PkrI	GCNGC	5 cut(s)	79, 202, 271, 292, 769
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PstI	CTGCAG	1 cut(s)	90
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SatI	GCNGC	5 cut(s)	78, 201, 270, 291, 768
Sau3AI	GATC	4 cut(s)	487, 691, 790, 794
ScrFI	CCNGG	1 cut(s)	156
SfcI	CTRYAG	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
SpeI	ACTAGT	1 cut(s)	728
Sse9I	AATT	5 cut(s)	497, 583, 661, 687, 697
SseBI	AGGCCT	2 cut(s)	184, 634
SsiI	CCGC	1 cut(s)	426
SspI	AATATT	1 cut(s)	517
SspMI	CTAG	4 cut(s)	26, 219, 729, 746
StuI	AGGCCT	2 cut(s)	184, 634
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	2 cut(s)	408, 455
TaqI	TCGA	2 cut(s)	578, 793
TasI	AATT	5 cut(s)	497, 583, 661, 687, 697
TatI	WGTACW	1 cut(s)	82
TfiI	GAWTC	2 cut(s)	575, 800
TscAI	CASTG	2 cut(s)	242, 262
TseI	GCWGC	5 cut(s)	77, 200, 269, 290, 767
TspDTI	ATGAA	2 cut(s)	317, 319
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	2 cut(s)	242, 262
XbaI	TCTAGA	1 cut(s)	745
XceI	RCATGY	1 cut(s)	761
XmiI	GTMKAC	1 cut(s)	11
XspI	CTAG	4 cut(s)	26, 219, 729, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.