Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0015366

Physical Location & Seq

Genomic Coordinates Reverse (-)

13935339 .. 13936319

Gene Structure 981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1171200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGTCAATGTCCACCTCCCAAGCCCTAGAAAAACCCTTCGAAGCTTTTGAGCAAGGTCAGGTACAGGTGGATATTGCTGCTGTGCTGCAGAGAAGCACACTTACTCCGTCCTCTCAATCCGGTGAGAGAAGAGGAAGGCGAAAGCAGGCCGAGCCTGGGAGGTTTCTCGGTGTGAGAAGAAGGCCTTGGGGGAGATATGCTGCTGAAATCAGAGACCCTAGCACTAAAGAAAGGCACTGGCTTGGCACATTTGACACTGCTGAAGAAGCAGCTTTGGCTTATGACAGAGCTGCCCTCTCCATGAAAGGCTCACAAGCAAGAACCAACTTCATTTACTCTGACAACACAACTTTCCACTCTCTCCTCTCACCCTTTGATGTCCAAACCCTTTTACCACAGCAATCACAGTTTTTCACCACTCAGACTGCTAAACAACAACTCACCAATCAAAACAGTCCACCTCATCATTCTAACATGTTTCAGTCTGATCAAACCCAATTTCAAAACCCTAATAATATTAGGTCATCATCATCGGCACATCATAAGGATGATGAGTGTTTCTTTTTCTCTGGCAATTCGAGTAATTCTAACTCGGGCTATTTGGCTTGCATTGTTCCTGATAGTTGCCTGCGGCCTCCTTCGGACAATGACGACCCCCCAAATTACACAAACTCAAAAGCTTTGAACATTGATCAAAATTGTAGCTTTGCAAACCCTAATAACTCCACTAGTGCTACACTTCCTCTAGATGTTATGAATGTGCAAGCTGCATTAGAAGCTCCTAATAACAACAATGGAGATCATCAGATTTCTTGCTTTGATGGATTCAGTCATGGATTCTGGGATAACCAGCAGCCATGGGAGTTCAATCCTATGATGACTGAAGATGGATGCATGGGAGCGTTGTATCCAATCGTCGAAAATTCGAGTGCTTATGGATCTTCTTCTTCATTCTCTTGCTTTGGACACTCACTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0010015 GO:0010022 GO:0010073 GO:0010101 GO:0010102 GO:0010432 GO:0010451 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1900618 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

327

Amino Acids

36.25

Weight (kDa)

5.32

Isoelectric Point (pI)

60.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	56 - 103	1e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18560
fragaria_vesca	FvH4_4g17630
malus_domestica	MD13G1171200.v1.1 MD16G1172800.v1.1
prunus_persica	Prupe.1G139600_v2.0.a1
pyrus_communis	pycom16g14490
rosa_chinensis	RchiOBHm_Chr4g0421551
rosa_laevigata	RLG00000007668
rosa_multiflora	Rmu_sc0010734.1_g000007
rosa_roxburghii	Rroxscaffold_5G00363800
rosa_rugosa	Rorug04G0172700
rosa_samantha	Rh4AG233100 Rh4BG235800 Rh4CG247400 Rh4DG231700
rosa_wichuraiana	Rw4G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	631
AclWI	GGATC	1 cut(s)	946
AcsI	RAATTY	1 cut(s)	922
AcuI	CTGAAG	2 cut(s)	282, 903
AfaI	GTAC	1 cut(s)	63
AfiI	CCNNNNNNNGG	1 cut(s)	156
AflIII	ACRYGT	1 cut(s)	474
AgsI	TTSAA	3 cut(s)	503, 685, 868
AhlI	ACTAGT	1 cut(s)	728
AjnI	CCWGG	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	2 cut(s)	169, 201
AluBI	AGCT	7 cut(s)	44, 272, 290, 680, 705, 767, 779
AluI	AGCT	7 cut(s)	44, 272, 290, 680, 705, 767, 779
Alw26I	GTCTC	1 cut(s)	207
AlwI	GGATC	1 cut(s)	946
Ama87I	CYCGRG	1 cut(s)	592
AoxI	GGCC	3 cut(s)	147, 182, 632
ApeKI	GCWGC	7 cut(s)	77, 85, 200, 269, 290, 767, 853
ApoI	RAATTY	1 cut(s)	922
AsuHPI	GGTGA	4 cut(s)	134, 360, 406, 433
AsuII	TTCGAA	1 cut(s)	39
AvaI	CYCGRG	1 cut(s)	592
BarI	GAAGNNNNNNTAC	2 cut(s)	85, 117
BbvI	GCAGC	7 cut(s)	64, 72, 187, 277, 281, 754, 865
BccI	CCATC	2 cut(s)	815, 881
BciT130I	CCWGG	1 cut(s)	156
BciVI	GTATCC	1 cut(s)	918
BclI	TGATCA	2 cut(s)	487, 691
BcoDI	GTCTC	1 cut(s)	207
BcuI	ACTAGT	1 cut(s)	728
BfaI	CTAG	4 cut(s)	26, 219, 729, 746
BfmI	CTRYAG	1 cut(s)	86
BfuI	GTATCC	1 cut(s)	918
BisI	GCNGC	8 cut(s)	78, 86, 201, 270, 291, 632, 768, 854
BlsI	GCNGC	8 cut(s)	79, 87, 202, 271, 292, 633, 769, 855
Bme1390I	CCNGG	1 cut(s)	156
BmeT110I	CYCGRG	1 cut(s)	592
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	1 cut(s)	881
BplI	GAGNNNNNCTC	2 cut(s)	279, 311
Bpu14I	TTCGAA	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	207
BsaJI	CCNNGG	3 cut(s)	155, 185, 857
BsaWI	WCCGGW	1 cut(s)	119
BsaXI	ACNNNNNCTCC	2 cut(s)	88, 118
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse1I	ACTGG	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	3 cut(s)	155, 185, 857
BseGI	GGATG	2 cut(s)	553, 896
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	434
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	7 cut(s)	64, 72, 187, 277, 281, 754, 865
BshFI	GGCC	3 cut(s)	149, 184, 634
BsiHKCI	CYCGRG	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	207
BsnI	GGCC	3 cut(s)	149, 184, 634
Bso31I	GGTCTC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	592
Bsp119I	TTCGAA	1 cut(s)	39
Bsp143I	GATC	4 cut(s)	487, 691, 799, 938
Bsp19I	CCATGG	1 cut(s)	857
BspACI	CCGC	1 cut(s)	631
BspANI	GGCC	3 cut(s)	149, 184, 634
BspCNI	CTCAG	1 cut(s)	433
BspMAI	CTGCAG	1 cut(s)	90
BspPI	GGATC	1 cut(s)	946
BspT104I	TTCGAA	1 cut(s)	39
BspTNI	GGTCTC	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	3 cut(s)	155, 185, 857
BssMI	GATC	4 cut(s)	487, 691, 799, 938
BssT1I	CCWWGG	2 cut(s)	185, 857
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	408, 455
Bst6I	CTCTTC	1 cut(s)	124
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	4 cut(s)	147, 607, 629, 765
BstDEI	CTNAG	1 cut(s)	420
BstDSI	CCRYGG	1 cut(s)	857
BstF5I	GGATG	2 cut(s)	553, 896
BstKTI	GATC	4 cut(s)	490, 694, 802, 941
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	4 cut(s)	487, 691, 799, 938
BstMWI	GCNNNNNNNGC	4 cut(s)	151, 266, 275, 776
BstNI	CCWGG	1 cut(s)	156
BstNSI	RCATGY	1 cut(s)	478
BstSCI	CCNGG	1 cut(s)	154
BstSFI	CTRYAG	1 cut(s)	86
BstV1I	GCAGC	7 cut(s)	64, 72, 187, 277, 281, 754, 865
BstX2I	RGATCY	1 cut(s)	938
BstYI	RGATCY	1 cut(s)	938
BsuI	GTATCC	1 cut(s)	918
BsuRI	GGCC	3 cut(s)	149, 184, 634
BtgI	CCRYGG	1 cut(s)	857
BtsCI	GGATG	2 cut(s)	553, 896
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	235, 255
Cac8I	GCNNGC	4 cut(s)	147, 607, 629, 765
Csp6I	GTAC	1 cut(s)	62
CviAII	CATG	5 cut(s)	301, 475, 833, 858, 895
CviQI	GTAC	1 cut(s)	62
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	4 cut(s)	489, 693, 801, 940
DpnII	GATC	4 cut(s)	487, 691, 799, 938
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco130I	CCWWGG	2 cut(s)	185, 857
Eco147I	AGGCCT	1 cut(s)	184
Eco31I	GGTCTC	1 cut(s)	207
Eco57I	CTGAAG	2 cut(s)	282, 903
Eco88I	CYCGRG	1 cut(s)	592
EcoRII	CCWGG	1 cut(s)	154
EcoT14I	CCWWGG	2 cut(s)	185, 857
EcoT22I	ATGCAT	1 cut(s)	896
ErhI	CCWWGG	2 cut(s)	185, 857
FaeI	CATG	5 cut(s)	304, 478, 836, 861, 898
FalI	AAGNNNNNCTT	2 cut(s)	169, 201
FatI	CATG	5 cut(s)	300, 474, 832, 857, 894
FbaI	TGATCA	2 cut(s)	487, 691
Fnu4HI	GCNGC	8 cut(s)	78, 86, 201, 270, 291, 632, 768, 854
FokI	GGATG	2 cut(s)	560, 903
Fsp4HI	GCNGC	8 cut(s)	78, 86, 201, 270, 291, 632, 768, 854
FspBI	CTAG	4 cut(s)	26, 219, 729, 746
GluI	GCNGC	8 cut(s)	78, 86, 201, 270, 291, 632, 768, 854
HaeIII	GGCC	3 cut(s)	149, 184, 634
HapII	CCGG	1 cut(s)	120
Hin1II	CATG	5 cut(s)	304, 478, 836, 861, 898
HindIII	AAGCTT	2 cut(s)	42, 678
HinfI	GANTC	2 cut(s)	825, 837
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	4 cut(s)	134, 360, 406, 433
Hpy166II	GTNNAC	2 cut(s)	12, 458
Hpy188I	TCNGA	6 cut(s)	212, 340, 423, 487, 643, 807
Hpy188III	TCNNGA	2 cut(s)	617, 746
Hpy8I	GTNNAC	2 cut(s)	12, 458
Hpy99I	CGWCG	1 cut(s)	920
HpyAV	CCTTC	4 cut(s)	46, 129, 174, 648
HpyCH4III	ACNGT	2 cut(s)	408, 455
HpyCH4V	TGCA	6 cut(s)	88, 609, 710, 763, 770, 894
HpyF10VI	GCNNNNNNNGC	4 cut(s)	151, 266, 275, 776
HpyF3I	CTNAG	1 cut(s)	420
Hsp92II	CATG	5 cut(s)	304, 478, 836, 861, 898
Ksp22I	TGATCA	2 cut(s)	487, 691
Kzo9I	GATC	4 cut(s)	487, 691, 799, 938
LmnI	GCTCC	2 cut(s)	784, 899
Lsp1109I	GCAGC	7 cut(s)	64, 72, 187, 277, 281, 754, 865
LweI	GCATC	1 cut(s)	881
MaeI	CTAG	4 cut(s)	26, 219, 729, 746
MalI	GATC	4 cut(s)	489, 693, 801, 940
MboI	GATC	4 cut(s)	487, 691, 799, 938
MboII	GAAGA	7 cut(s)	141, 189, 275, 896, 933, 936, 939
MflI	RGATCY	1 cut(s)	938
MluCI	AATT	6 cut(s)	497, 574, 583, 661, 697, 922
MnlI	CCTC	9 cut(s)	25, 121, 125, 153, 305, 374, 471, 645, 753
Mph1103I	ATGCAT	1 cut(s)	896
MslI	CAYNNNNRTG	1 cut(s)	546
MspI	CCGG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	4 cut(s)	151, 266, 275, 776
NcoI	CCATGG	1 cut(s)	857
NdeII	GATC	4 cut(s)	487, 691, 799, 938
NlaIII	CATG	5 cut(s)	304, 478, 836, 861, 898
NmeAIII	GCCGAG	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	896
NspI	RCATGY	1 cut(s)	478
NspV	TTCGAA	1 cut(s)	39
PceI	AGGCCT	1 cut(s)	184
PciI	ACATGT	1 cut(s)	474
PfeI	GAWTC	2 cut(s)	825, 837
PkrI	GCNGC	8 cut(s)	79, 87, 202, 271, 292, 633, 769, 855
PscI	ACATGT	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PstI	CTGCAG	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	938
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
RseI	CAYNNNNRTG	1 cut(s)	546
SatI	GCNGC	8 cut(s)	78, 86, 201, 270, 291, 632, 768, 854
Sau3AI	GATC	4 cut(s)	487, 691, 799, 938
ScrFI	CCNGG	1 cut(s)	156
SfaNI	GCATC	1 cut(s)	881
SfcI	CTRYAG	1 cut(s)	86
SfuI	TTCGAA	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	546
SpeI	ACTAGT	1 cut(s)	728
Sse9I	AATT	6 cut(s)	497, 574, 583, 661, 697, 922
SseBI	AGGCCT	1 cut(s)	184
SsiI	CCGC	1 cut(s)	631
SspI	AATATT	1 cut(s)	517
SspMI	CTAG	4 cut(s)	26, 219, 729, 746
StuI	AGGCCT	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	2 cut(s)	185, 857
TaaI	ACNGT	2 cut(s)	408, 455
TaqI	TCGA	4 cut(s)	39, 578, 918, 926
TasI	AATT	6 cut(s)	497, 574, 583, 661, 697, 922
TauI	GCSGC	1 cut(s)	634
TfiI	GAWTC	2 cut(s)	825, 837
TscAI	CASTG	2 cut(s)	242, 262
TseI	GCWGC	7 cut(s)	77, 85, 200, 269, 290, 767, 853
TspDTI	ATGAA	4 cut(s)	317, 319, 770, 939
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	2 cut(s)	242, 262
XapI	RAATTY	1 cut(s)	922
XbaI	TCTAGA	1 cut(s)	745
XceI	RCATGY	1 cut(s)	478
XspI	CTAG	4 cut(s)	26, 219, 729, 746
Zsp2I	ATGCAT	1 cut(s)	896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.