Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0015366

Physical Location & Seq

Genomic Coordinates Forward (+)

45109987 .. 45110988

Gene Structure 1002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00363800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGAAAAACCTCTTAGCCAATCTGGTGAGAGATCAAGAGGGAGAAGGAAGCAAGCAGAGCCAGGTAGGTTTCTTGGGGTGAGGAGAAGGCCTTGGGGTAGATATGCAGCCGAGATCAGAGACCCAAGTACTAAAGAGAGGCATTGGCTTGGGACATTTGACACTGCTCAAGAAGCAGCTCTGGCTTATGACAGAGCTGCTTTGTCCATGAAAGGAGCTCAAGCAAGAACCAACTTCATTTACTCTGACAACTCCACTTTCCACTCTCTTCTAACACCCTTTGATGTTCAAACCCTATTGCCACAACAATCACTTGAGTTCTTCACTTCCACTACTACACAGACTCCTAGACAACAACAACCCACCAATCAGAACAGTCCACCTGGTCAGTCCAGCATGTTTTATCAGAATGAGAGAAACCCAAATATTAGGTCCAATAATGAAAAACCCTCATTTGATAGTCTCTTCTTCTCCAATGACTTTTCTTCTGATAACTCAGGTTACTTGGGTTGCATAGTTCCTGATAACTGCTTGAGGCCTCCTTGTGATATTCCCAGGAGCAGTGACTTTACTACTACTACTCATGCTTTGAATATTGATCATCAGAACTTTAGCTTTCCAAACACTGCAAACTCCTCCATTCAAACTCAACCACATTGTGATCAAAGCAGTACTGCTACTACATTTCCTCTAGATGTAATGAATGTGCCAGCTTCGATAATGGCGTCTAGCAGTAACCCCGGAGATCATCTTTCTTGCTTTGAGGGATTCAGTCATGGATTCTGGGGGGATAACCAGCAGTACTCATCATGGGATCAGTTGAATTATAGAGAGCTTTCAACAATGGTGGATAACAACACATTGATGACTGAAGATGGGTGCAACATTGGAGCTTTGTATCCGATCATCGAAAATCCTAGTTCTTCTTCGTTCTCTTGCTCCCCATCAGTTCATCCTCCTATTGGTGATGTAGTAATTGACTTTGGCCATTCACTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0010015 GO:0010022 GO:0010073 GO:0010101 GO:0010102 GO:0010432 GO:0010451 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1900618 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

333

Amino Acids

37.19

Weight (kDa)

5.32

Isoelectric Point (pI)

57.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	25 - 72	7.3e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18560
fragaria_vesca	FvH4_4g17630
malus_domestica	MD13G1171200.v1.1 MD16G1172800.v1.1
prunus_persica	Prupe.1G139600_v2.0.a1
pyrus_communis	pycom16g14490
rosa_chinensis	RchiOBHm_Chr4g0421551
rosa_laevigata	RLG00000007668
rosa_multiflora	Rmu_sc0010734.1_g000007
rosa_roxburghii	Rroxscaffold_5G00363800
rosa_rugosa	Rorug04G0172700
rosa_samantha	Rh4AG233100 Rh4BG235800 Rh4CG247400 Rh4DG231700
rosa_wichuraiana	Rw4G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	822
AcoI	YGGCCR	1 cut(s)	985
AcuI	CTGAAG	1 cut(s)	891
AcyI	GRCGYC	1 cut(s)	725
AdeI	CACNNNGTG	1 cut(s)	659
AfaI	GTAC	3 cut(s)	130, 673, 803
AfiI	CCNNNNNNNGG	1 cut(s)	962
AgsI	TTSAA	5 cut(s)	290, 592, 644, 823, 840
AjnI	CCWGG	3 cut(s)	61, 382, 554
AluBI	AGCT	7 cut(s)	179, 197, 218, 615, 713, 835, 893
AluI	AGCT	7 cut(s)	179, 197, 218, 615, 713, 835, 893
Alw21I	GWGCWC	1 cut(s)	220
Alw26I	GTCTC	2 cut(s)	114, 467
AlwI	GGATC	1 cut(s)	822
AoxI	GGCC	3 cut(s)	89, 536, 985
ApeKI	GCWGC	3 cut(s)	107, 176, 197
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
AspS9I	GGNCC	1 cut(s)	432
AsuC2I	CCSGG	1 cut(s)	741
AsuHPI	GGTGA	3 cut(s)	38, 91, 977
AvaII	GGWCC	1 cut(s)	432
BalI	TGGCCA	1 cut(s)	987
BanII	GRGCYC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	220
BbvI	GCAGC	3 cut(s)	119, 184, 188
BccI	CCATC	2 cut(s)	869, 952
BciT130I	CCWGG	3 cut(s)	63, 384, 556
BciVI	GTATCC	1 cut(s)	909
BclI	TGATCA	2 cut(s)	598, 661
BcnI	CCSGG	1 cut(s)	741
BcoDI	GTCTC	2 cut(s)	114, 467
BfaI	CTAG	4 cut(s)	348, 692, 729, 918
BfuI	GTATCC	1 cut(s)	909
BisI	GCNGC	3 cut(s)	108, 177, 198
BlsI	GCNGC	3 cut(s)	109, 178, 199
BmcAI	AGTACT	3 cut(s)	130, 673, 803
Bme1390I	CCNGG	4 cut(s)	63, 384, 556, 741
Bme18I	GGWCC	1 cut(s)	432
BmgT120I	GGNCC	1 cut(s)	432
BmrFI	CCNGG	4 cut(s)	63, 384, 556, 741
BpuEI	CTTGAG	4 cut(s)	153, 204, 335, 553
BpuMI	CCSGG	1 cut(s)	741
BsaHI	GRCGYC	1 cut(s)	725
BsaI	GGTCTC	1 cut(s)	114
BsaJI	CCNNGG	3 cut(s)	92, 554, 739
BsaXI	ACNNNNNCTCC	2 cut(s)	328, 358
Bsc4I	CCNNNNNNNGG	1 cut(s)	962
BseBI	CCWGG	3 cut(s)	63, 384, 556
BseDI	CCNNGG	3 cut(s)	92, 554, 739
BseGI	GGATG	1 cut(s)	952
BseLI	CCNNNNNNNGG	1 cut(s)	962
BseMII	CTCAG	1 cut(s)	510
BseRI	GAGGAG	2 cut(s)	97, 625
BseXI	GCAGC	3 cut(s)	119, 184, 188
BshFI	GGCC	3 cut(s)	91, 538, 987
BsiHKAI	GWGCWC	1 cut(s)	220
BsiSI	CCGG	1 cut(s)	741
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	962
BsmAI	GTCTC	2 cut(s)	114, 467
BsmFI	GGGAC	1 cut(s)	166
BsnI	GGCC	3 cut(s)	91, 538, 987
Bso31I	GGTCTC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	7 cut(s)	32, 114, 598, 661, 745, 814, 903
BspANI	GGCC	3 cut(s)	91, 538, 987
BspCNI	CTCAG	1 cut(s)	509
BspPI	GGATC	1 cut(s)	822
BspTNI	GGTCTC	1 cut(s)	114
BssECI	CCNNGG	3 cut(s)	92, 554, 739
BssMI	GATC	7 cut(s)	32, 114, 598, 661, 745, 814, 903
BssNI	GRCGYC	1 cut(s)	725
BssT1I	CCWWGG	1 cut(s)	92
Bst2UI	CCWGG	3 cut(s)	63, 384, 556
Bst4CI	ACNGT	1 cut(s)	377
Bst6I	CTCTTC	2 cut(s)	273, 470
BstACI	GRCGYC	1 cut(s)	725
BstC8I	GCNNGC	2 cut(s)	54, 711
BstDEI	CTNAG	2 cut(s)	14, 496
BstF5I	GGATG	1 cut(s)	952
BstKTI	GATC	7 cut(s)	35, 117, 601, 664, 748, 817, 906
BstMAI	GTCTC	2 cut(s)	114, 467
BstMBI	GATC	7 cut(s)	32, 114, 598, 661, 745, 814, 903
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 173, 182
BstNI	CCWGG	3 cut(s)	63, 384, 556
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	4 cut(s)	61, 382, 554, 739
BstV1I	GCAGC	3 cut(s)	119, 184, 188
BsuI	GTATCC	1 cut(s)	909
BsuRI	GGCC	3 cut(s)	91, 538, 987
BtsCI	GGATG	1 cut(s)	952
BtsI	GCAGTG	3 cut(s)	162, 568, 624
BtsIMutI	CAGTG	3 cut(s)	162, 568, 624
Cac8I	GCNNGC	2 cut(s)	54, 711
Cfr13I	GGNCC	1 cut(s)	432
CseI	GACGC	1 cut(s)	714
CsiI	ACCWGGT	1 cut(s)	382
Csp6I	GTAC	3 cut(s)	129, 672, 802
CspCI	CAANNNNNGTGG	2 cut(s)	828, 863
CviAII	CATG	5 cut(s)	208, 397, 584, 776, 810
CviQI	GTAC	3 cut(s)	129, 672, 802
DdeI	CTNAG	2 cut(s)	14, 496
DpnI	GATC	7 cut(s)	34, 116, 600, 663, 747, 816, 905
DpnII	GATC	7 cut(s)	32, 114, 598, 661, 745, 814, 903
DraIII	CACNNNGTG	1 cut(s)	659
EaeI	YGGCCR	1 cut(s)	985
Eam1104I	CTCTTC	2 cut(s)	273, 470
EarI	CTCTTC	2 cut(s)	273, 470
Ecl136II	GAGCTC	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	92
Eco147I	AGGCCT	2 cut(s)	91, 538
Eco24I	GRGCYC	1 cut(s)	220
Eco31I	GGTCTC	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	432
Eco53kI	GAGCTC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	891
EcoICRI	GAGCTC	1 cut(s)	218
EcoRII	CCWGG	3 cut(s)	61, 382, 554
EcoT14I	CCWWGG	1 cut(s)	92
EcoT38I	GRGCYC	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	5 cut(s)	211, 400, 587, 779, 813
FaiI	YATR	9 cut(s)	105, 189, 209, 398, 515, 585, 777, 811, 828
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	5 cut(s)	207, 396, 583, 775, 809
FbaI	TGATCA	2 cut(s)	598, 661
Fnu4HI	GCNGC	3 cut(s)	108, 177, 198
FokI	GGATG	1 cut(s)	939
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	3 cut(s)	108, 177, 198
FspBI	CTAG	4 cut(s)	348, 692, 729, 918
GluI	GCNGC	3 cut(s)	108, 177, 198
HaeIII	GGCC	3 cut(s)	91, 538, 987
HapII	CCGG	1 cut(s)	741
HgaI	GACGC	1 cut(s)	714
Hin1I	GRCGYC	1 cut(s)	725
Hin1II	CATG	5 cut(s)	211, 400, 587, 779, 813
HinfI	GANTC	3 cut(s)	343, 768, 780
HpaII	CCGG	1 cut(s)	741
HphI	GGTGA	3 cut(s)	38, 91, 977
Hpy166II	GTNNAC	1 cut(s)	380
Hpy188I	TCNGA	7 cut(s)	119, 247, 372, 408, 490, 606, 903
Hpy188III	TCNNGA	4 cut(s)	36, 170, 521, 692
Hpy8I	GTNNAC	1 cut(s)	380
HpyAV	CCTTC	2 cut(s)	39, 81
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4V	TGCA	4 cut(s)	107, 513, 629, 882
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 173, 182
HpyF3I	CTNAG	2 cut(s)	14, 496
Hsp92I	GRCGYC	1 cut(s)	725
Hsp92II	CATG	5 cut(s)	211, 400, 587, 779, 813
Ksp22I	TGATCA	2 cut(s)	598, 661
Kzo9I	GATC	7 cut(s)	32, 114, 598, 661, 745, 814, 903
LmnI	GCTCC	4 cut(s)	215, 558, 890, 944
Lsp1109I	GCAGC	3 cut(s)	119, 184, 188
MabI	ACCWGGT	1 cut(s)	382
MaeI	CTAG	4 cut(s)	348, 692, 729, 918
MaeIII	GTNAC	3 cut(s)	500, 563, 734
MalI	GATC	7 cut(s)	34, 116, 600, 663, 747, 816, 905
MboI	GATC	7 cut(s)	32, 114, 598, 661, 745, 814, 903
MboII	GAAGA	8 cut(s)	260, 313, 457, 460, 477, 884, 915, 918
MhlI	GDGCHC	1 cut(s)	220
MlsI	TGGCCA	1 cut(s)	987
MluCI	AATT	2 cut(s)	823, 975
MluNI	TGGCCA	1 cut(s)	987
MlyI	GAGTC	1 cut(s)	337
Mox20I	TGGCCA	1 cut(s)	987
MscI	TGGCCA	1 cut(s)	987
MslI	CAYNNNNRTG	1 cut(s)	863
Msp20I	TGGCCA	1 cut(s)	987
MspI	CCGG	1 cut(s)	741
MspR9I	CCNGG	4 cut(s)	63, 384, 556, 741
MvaI	CCWGG	3 cut(s)	63, 384, 556
MwoI	GCNNNNNNNGC	3 cut(s)	58, 173, 182
NciI	CCSGG	1 cut(s)	741
NdeII	GATC	7 cut(s)	32, 114, 598, 661, 745, 814, 903
NlaIII	CATG	5 cut(s)	211, 400, 587, 779, 813
NmeAIII	GCCGAG	1 cut(s)	136
NmuCI	GTSAC	1 cut(s)	563
NspI	RCATGY	1 cut(s)	400
PceI	AGGCCT	2 cut(s)	91, 538
PcsI	WCGNNNNNNNCGW	1 cut(s)	722
PfeI	GAWTC	2 cut(s)	768, 780
PkrI	GCNGC	3 cut(s)	109, 178, 199
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
Psp124BI	GAGCTC	1 cut(s)	220
Psp6I	CCWGG	3 cut(s)	61, 382, 554
PspGI	CCWGG	3 cut(s)	61, 382, 554
PspPI	GGNCC	1 cut(s)	432
RsaI	GTAC	3 cut(s)	130, 673, 803
RsaNI	GTAC	3 cut(s)	129, 672, 802
RseI	CAYNNNNRTG	1 cut(s)	863
SacI	GAGCTC	1 cut(s)	220
SatI	GCNGC	3 cut(s)	108, 177, 198
Sau3AI	GATC	7 cut(s)	32, 114, 598, 661, 745, 814, 903
Sau96I	GGNCC	1 cut(s)	432
ScaI	AGTACT	3 cut(s)	130, 673, 803
SchI	GAGTC	1 cut(s)	337
ScrFI	CCNGG	4 cut(s)	63, 384, 556, 741
SduI	GDGCHC	1 cut(s)	220
SexAI	ACCWGGT	1 cut(s)	382
SinI	GGWCC	1 cut(s)	432
SmiMI	CAYNNNNRTG	1 cut(s)	863
SmlI	CTYRAG	4 cut(s)	168, 219, 314, 532
SmoI	CTYRAG	4 cut(s)	168, 219, 314, 532
Sse9I	AATT	2 cut(s)	823, 975
SseBI	AGGCCT	2 cut(s)	91, 538
SspI	AATATT	2 cut(s)	427, 595
SspMI	CTAG	4 cut(s)	348, 692, 729, 918
SstI	GAGCTC	1 cut(s)	220
StuI	AGGCCT	2 cut(s)	91, 538
StyD4I	CCNGG	4 cut(s)	61, 382, 554, 739
StyI	CCWWGG	1 cut(s)	92
TaaI	ACNGT	1 cut(s)	377
TaqI	TCGA	2 cut(s)	716, 909
TasI	AATT	2 cut(s)	823, 975
TatI	WGTACW	3 cut(s)	128, 671, 801
TfiI	GAWTC	2 cut(s)	768, 780
TscAI	CASTG	3 cut(s)	169, 568, 631
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	3 cut(s)	107, 176, 197
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	5 cut(s)	224, 226, 456, 716, 941
TspRI	CASTG	3 cut(s)	169, 568, 631
VpaK11BI	GGWCC	1 cut(s)	432
XbaI	TCTAGA	1 cut(s)	691
XceI	RCATGY	1 cut(s)	400
XspI	CTAG	4 cut(s)	348, 692, 729, 918
ZrmI	AGTACT	3 cut(s)	130, 673, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.