Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015366

Physical Location & Seq

Genomic Coordinates Reverse (-)

10939962 .. 10941439

Gene Structure 1478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G139600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGTCCACCTCCAAAACCTCAGATAAACCCTTTAAAGCTCATGAGCAGGGCCAGGCACAGATGGGTTTTGCTTCTGTGCTTCAGAGGAACACACCTCCCTCTCAGTCTGGTGAGAGAAGGGGCCGAAGAAAGCAAGCAGAGCCAGGGAGGTTTCTTGGGGTGAGGAGAAGGCCTTGGGGAAGATATGCTGCTGAAATTCGAGACCCTAGCACTAAAGAAAGGCACTGGCTTGGCACATTTGACACTGCTCAAGAAGCAGCTCTGGCTTATGACAGAGCTGCTCTGTCCATGAAAGGCTCACAAGCAAGAACCAACTTCATTTATTCTGACAACACCACTTTTCACTCTCTCCTAACACCGTTTGATCTCCAAAACCTTTTACCACAACAATCACAGTTTTTCTCAGCTGCCAAACAACAACCCACCAATCACAACAGTCCACCTCATCAGTCTGGCATTTTTCAGAATGATCAAACTCAAAACCCCAATATCAGGTCCAATAACATTAACACATGTGGAGCTGAAACCTCTCGTGGTTCATCTGCACATGATGGGGATGATGATGATTTCTTTTTCTCCAATGGTTCTAATTCTAACTCAGGCTACTTGGCCTGCATAGTTCCTGACAACTGCTTGAGGCCTCCTTCTGAATCTGATCATCATGCCACTAATCACAGAAGCTCCAAAACCAGTGACTTCAATATTGATCAAGATTGTAGCTTTGCAAACACTAACTCCATTGAAACCAAATCACATTGTCTAGATGTTATGAATGTGCAAGCTGCATTAATGGCTTCTAACACTAGCCCTTCTGGAGATCAGCTTCCTAGCTTTGATGGATTCAGCCATGGATTCTGGGACAACCAGCAGCCAATATGGGAGTTGCATTCAAGAGAGCTGTCTGCGGCCATGGTGGACAATCCGTTCATGATTGAAGATGGATGCATGGGAGGAGCTTTGTATCCAATCGTCGAAAATTCTAGTTTTGGCTTAATACCTCAGGCAACTACTTCTCCTTCTTCGTTCTCTTGCTCTCCATCAGTTCCTCCTTTTGGTGATGCAGTCTTTGAGTTTGGCCAGTCACTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0010015 GO:0010022 GO:0010073 GO:0010101 GO:0010102 GO:0010432 GO:0010451 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1900618 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

364

Amino Acids

39.94

Weight (kDa)

5.6

Isoelectric Point (pI)

62.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18560
fragaria_vesca	FvH4_4g17630
malus_domestica	MD13G1171200.v1.1 MD16G1172800.v1.1
prunus_persica	Prupe.1G139600_v2.0.a1
pyrus_communis	pycom16g14490
rosa_chinensis	RchiOBHm_Chr4g0421551
rosa_laevigata	RLG00000007668
rosa_multiflora	Rmu_sc0010734.1_g000007
rosa_roxburghii	Rroxscaffold_5G00363800
rosa_rugosa	Rorug04G0172700
rosa_samantha	Rh4AG233100 Rh4BG235800 Rh4CG247400 Rh4DG231700
rosa_wichuraiana	Rw4G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	905
AcoI	YGGCCR	2 cut(s)	906, 1075
AcsI	RAATTY	2 cut(s)	195, 976
AcuI	CTGAAG	1 cut(s)	65
AfiI	CCNNNNNNNGG	2 cut(s)	492, 1052
AflIII	ACRYGT	1 cut(s)	512
AgsI	TTSAA	4 cut(s)	700, 743, 891, 935
AjnI	CCWGG	2 cut(s)	51, 142
AloI	GAACNNNNNNTCC	2 cut(s)	908, 940
Alw26I	GTCTC	1 cut(s)	195
AoxI	GGCC	7 cut(s)	49, 121, 170, 609, 638, 906, 1075
ApeKI	GCWGC	6 cut(s)	188, 257, 278, 407, 782, 868
ApoI	RAATTY	2 cut(s)	195, 976
AseI	ATTAAT	1 cut(s)	788
AspS9I	GGNCC	3 cut(s)	49, 121, 495
AsuHPI	GGTGA	3 cut(s)	122, 172, 1067
AvaII	GGWCC	1 cut(s)	495
AxyI	CCTNAGG	1 cut(s)	999
BalI	TGGCCA	1 cut(s)	1077
BauI	CACGAG	1 cut(s)	531
BbvI	GCAGC	6 cut(s)	175, 265, 269, 394, 769, 880
BccI	CCATC	5 cut(s)	55, 545, 830, 932, 1045
BciT130I	CCWGG	2 cut(s)	53, 144
BciVI	GTATCC	1 cut(s)	972
BclI	TGATCA	3 cut(s)	469, 655, 706
BcoDI	GTCTC	1 cut(s)	195
BfaI	CTAG	5 cut(s)	207, 761, 804, 828, 981
BfuI	GTATCC	1 cut(s)	972
BisI	GCNGC	7 cut(s)	189, 258, 279, 408, 783, 869, 906
BlsI	GCNGC	7 cut(s)	190, 259, 280, 409, 784, 870, 907
Bme1390I	CCNGG	2 cut(s)	53, 144
Bme18I	GGWCC	1 cut(s)	495
BmgT120I	GGNCC	3 cut(s)	49, 121, 495
BmiI	GGNNCC	1 cut(s)	122
BmrFI	CCNGG	2 cut(s)	53, 144
BmsI	GCATC	2 cut(s)	932, 1048
BpmI	CTGGAG	1 cut(s)	834
BpuEI	CTTGAG	2 cut(s)	234, 655
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	4 cut(s)	143, 173, 847, 909
BsaXI	ACNNNNNCTCC	6 cut(s)	665, 695, 719, 749, 997, 1027
Bsc4I	CCNNNNNNNGG	2 cut(s)	492, 1052
Bse1I	ACTGG	3 cut(s)	230, 690, 1078
Bse21I	CCTNAGG	1 cut(s)	999
BseBI	CCWGG	2 cut(s)	53, 144
BseDI	CCNNGG	4 cut(s)	143, 173, 847, 909
BseGI	GGATG	2 cut(s)	562, 947
BseLI	CCNNNNNNNGG	2 cut(s)	492, 1052
BseMII	CTCAG	5 cut(s)	33, 116, 417, 612, 1013
BseNI	ACTGG	3 cut(s)	230, 690, 1078
BseRI	GAGGAG	2 cut(s)	178, 966
BseXI	GCAGC	6 cut(s)	175, 265, 269, 394, 769, 880
BsgI	GTGCAG	1 cut(s)	528
BshFI	GGCC	7 cut(s)	51, 123, 172, 611, 640, 908, 1077
BslFI	GGGAC	1 cut(s)	872
BslI	CCNNNNNNNGG	2 cut(s)	492, 1052
BsmAI	GTCTC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	872
BsmI	GAATGC	1 cut(s)	886
BsnI	GGCC	7 cut(s)	51, 123, 172, 611, 640, 908, 1077
Bso31I	GGTCTC	1 cut(s)	195
Bsp143I	GATC	5 cut(s)	364, 469, 655, 706, 817
Bsp19I	CCATGG	2 cut(s)	847, 909
BspACI	CCGC	1 cut(s)	905
BspANI	GGCC	7 cut(s)	51, 123, 172, 611, 640, 908, 1077
BspCNI	CTCAG	5 cut(s)	32, 115, 416, 611, 1012
BspHI	TCATGA	2 cut(s)	40, 927
BspLI	GGNNCC	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	195
BsrI	ACTGG	3 cut(s)	230, 690, 1078
BssECI	CCNNGG	4 cut(s)	143, 173, 847, 909
BssMI	GATC	5 cut(s)	364, 469, 655, 706, 817
BssSI	CACGAG	1 cut(s)	531
BssT1I	CCWWGG	3 cut(s)	173, 847, 909
Bst2BI	CACGAG	1 cut(s)	531
Bst2UI	CCWGG	2 cut(s)	53, 144
Bst4CI	ACNGT	3 cut(s)	360, 396, 437
BstC8I	GCNNGC	3 cut(s)	135, 613, 780
BstDEI	CTNAG	5 cut(s)	19, 102, 403, 598, 999
BstDSI	CCRYGG	2 cut(s)	847, 909
BstF5I	GGATG	2 cut(s)	562, 947
BstKTI	GATC	5 cut(s)	367, 472, 658, 709, 820
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	5 cut(s)	364, 469, 655, 706, 817
BstMWI	GCNNNNNNNGC	4 cut(s)	139, 254, 263, 791
BstNI	CCWGG	2 cut(s)	53, 144
BstNSI	RCATGY	1 cut(s)	516
BstSCI	CCNGG	2 cut(s)	51, 142
BstV1I	GCAGC	6 cut(s)	175, 265, 269, 394, 769, 880
Bsu36I	CCTNAGG	1 cut(s)	999
BsuI	GTATCC	1 cut(s)	972
BsuRI	GGCC	7 cut(s)	51, 123, 172, 611, 640, 908, 1077
BtgI	CCRYGG	2 cut(s)	847, 909
BtsCI	GGATG	2 cut(s)	562, 947
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	3 cut(s)	223, 243, 697
Cac8I	GCNNGC	3 cut(s)	135, 613, 780
CciI	TCATGA	2 cut(s)	40, 927
Cfr13I	GGNCC	3 cut(s)	49, 121, 495
CviAII	CATG	9 cut(s)	41, 289, 513, 548, 662, 848, 910, 928, 946
DdeI	CTNAG	5 cut(s)	19, 102, 403, 598, 999
DpnI	GATC	5 cut(s)	366, 471, 657, 708, 819
DpnII	GATC	5 cut(s)	364, 469, 655, 706, 817
DraI	TTTAAA	1 cut(s)	34
EaeI	YGGCCR	2 cut(s)	906, 1075
Eco130I	CCWWGG	3 cut(s)	173, 847, 909
Eco147I	AGGCCT	2 cut(s)	172, 640
Eco31I	GGTCTC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	495
Eco57I	CTGAAG	1 cut(s)	65
Eco81I	CCTNAGG	1 cut(s)	999
EcoRII	CCWGG	2 cut(s)	51, 142
EcoT14I	CCWWGG	3 cut(s)	173, 847, 909
EcoT22I	ATGCAT	1 cut(s)	947
ErhI	CCWWGG	3 cut(s)	173, 847, 909
FaeI	CATG	9 cut(s)	44, 292, 516, 551, 665, 851, 913, 931, 949
FaqI	GGGAC	1 cut(s)	872
FatI	CATG	9 cut(s)	40, 288, 512, 547, 661, 847, 909, 927, 945
FbaI	TGATCA	3 cut(s)	469, 655, 706
Fnu4HI	GCNGC	7 cut(s)	189, 258, 279, 408, 783, 869, 906
FokI	GGATG	2 cut(s)	569, 954
Fsp4HI	GCNGC	7 cut(s)	189, 258, 279, 408, 783, 869, 906
FspBI	CTAG	5 cut(s)	207, 761, 804, 828, 981
GluI	GCNGC	7 cut(s)	189, 258, 279, 408, 783, 869, 906
GsuI	CTGGAG	1 cut(s)	834
HaeIII	GGCC	7 cut(s)	51, 123, 172, 611, 640, 908, 1077
Hin1II	CATG	9 cut(s)	44, 292, 516, 551, 665, 851, 913, 931, 949
HinfI	GANTC	3 cut(s)	650, 840, 852
HphI	GGTGA	3 cut(s)	122, 172, 1067
Hpy166II	GTNNAC	3 cut(s)	6, 440, 916
Hpy188I	TCNGA	6 cut(s)	22, 84, 328, 465, 649, 655
Hpy188III	TCNNGA	9 cut(s)	41, 200, 251, 623, 710, 761, 813, 891, 928
Hpy8I	GTNNAC	3 cut(s)	6, 440, 916
Hpy99I	CGWCG	1 cut(s)	974
HpyAV	CCTTC	5 cut(s)	111, 162, 654, 819, 1026
HpyCH4III	ACNGT	3 cut(s)	360, 396, 437
HpyCH4V	TGCA	8 cut(s)	545, 615, 725, 778, 785, 886, 945, 1061
HpyF10VI	GCNNNNNNNGC	4 cut(s)	139, 254, 263, 791
HpyF3I	CTNAG	5 cut(s)	19, 102, 403, 598, 999
Hsp92II	CATG	9 cut(s)	44, 292, 516, 551, 665, 851, 913, 931, 949
Ksp22I	TGATCA	3 cut(s)	469, 655, 706
Kzo9I	GATC	5 cut(s)	364, 469, 655, 706, 817
LmnI	GCTCC	3 cut(s)	518, 686, 953
Lsp1109I	GCAGC	6 cut(s)	175, 265, 269, 394, 769, 880
LweI	GCATC	2 cut(s)	932, 1048
MaeI	CTAG	5 cut(s)	207, 761, 804, 828, 981
MaeIII	GTNAC	2 cut(s)	692, 1080
MalI	GATC	5 cut(s)	366, 471, 657, 708, 819
MboI	GATC	5 cut(s)	364, 469, 655, 706, 817
MboII	GAAGA	4 cut(s)	138, 192, 947, 1011
MlsI	TGGCCA	1 cut(s)	1077
MluCI	AATT	3 cut(s)	195, 589, 976
MluNI	TGGCCA	1 cut(s)	1077
Mox20I	TGGCCA	1 cut(s)	1077
Mph1103I	ATGCAT	1 cut(s)	947
MscI	TGGCCA	1 cut(s)	1077
MseI	TTAA	4 cut(s)	33, 507, 788, 992
Msp20I	TGGCCA	1 cut(s)	1077
MspA1I	CMGCKG	1 cut(s)	407
MspR9I	CCNGG	2 cut(s)	53, 144
Mva1269I	GAATGC	1 cut(s)	886
MvaI	CCWGG	2 cut(s)	53, 144
MwoI	GCNNNNNNNGC	4 cut(s)	139, 254, 263, 791
NcoI	CCATGG	2 cut(s)	847, 909
NdeII	GATC	5 cut(s)	364, 469, 655, 706, 817
NlaIII	CATG	9 cut(s)	44, 292, 516, 551, 665, 851, 913, 931, 949
NlaIV	GGNNCC	1 cut(s)	122
NmuCI	GTSAC	2 cut(s)	692, 1080
NsiI	ATGCAT	1 cut(s)	947
NspI	RCATGY	1 cut(s)	516
PagI	TCATGA	2 cut(s)	40, 927
PceI	AGGCCT	2 cut(s)	172, 640
PciI	ACATGT	1 cut(s)	512
PctI	GAATGC	1 cut(s)	886
PfeI	GAWTC	3 cut(s)	650, 840, 852
PkrI	GCNGC	7 cut(s)	190, 259, 280, 409, 784, 870, 907
PscI	ACATGT	1 cut(s)	512
PshBI	ATTAAT	1 cut(s)	788
Psp6I	CCWGG	2 cut(s)	51, 142
PspGI	CCWGG	2 cut(s)	51, 142
PspN4I	GGNNCC	1 cut(s)	122
PspPI	GGNCC	3 cut(s)	49, 121, 495
PvuII	CAGCTG	1 cut(s)	407
SaqAI	TTAA	4 cut(s)	33, 507, 788, 992
SatI	GCNGC	7 cut(s)	189, 258, 279, 408, 783, 869, 906
Sau3AI	GATC	5 cut(s)	364, 469, 655, 706, 817
Sau96I	GGNCC	3 cut(s)	49, 121, 495
ScrFI	CCNGG	2 cut(s)	53, 144
SfaNI	GCATC	2 cut(s)	932, 1048
SinI	GGWCC	1 cut(s)	495
SmlI	CTYRAG	2 cut(s)	249, 634
SmoI	CTYRAG	2 cut(s)	249, 634
Sse9I	AATT	3 cut(s)	195, 589, 976
SseBI	AGGCCT	2 cut(s)	172, 640
SsiI	CCGC	1 cut(s)	905
SspI	AATATT	1 cut(s)	703
SspMI	CTAG	5 cut(s)	207, 761, 804, 828, 981
StuI	AGGCCT	2 cut(s)	172, 640
StyD4I	CCNGG	2 cut(s)	51, 142
StyI	CCWWGG	3 cut(s)	173, 847, 909
TaaI	ACNGT	3 cut(s)	360, 396, 437
TaqI	TCGA	2 cut(s)	199, 972
TasI	AATT	3 cut(s)	195, 589, 976
TauI	GCSGC	1 cut(s)	908
TfiI	GAWTC	3 cut(s)	650, 840, 852
Tru1I	TTAA	4 cut(s)	33, 507, 788, 992
Tru9I	TTAA	4 cut(s)	33, 507, 788, 992
TscAI	CASTG	3 cut(s)	230, 250, 697
TseFI	GTSAC	2 cut(s)	692, 1080
TseI	GCWGC	6 cut(s)	188, 257, 278, 407, 782, 868
Tsp45I	GTSAC	2 cut(s)	692, 1080
TspDTI	ATGAA	5 cut(s)	305, 307, 528, 785, 916
TspGWI	ACGGA	1 cut(s)	912
TspRI	CASTG	3 cut(s)	230, 250, 697
VpaK11BI	GGWCC	1 cut(s)	495
VspI	ATTAAT	1 cut(s)	788
XapI	RAATTY	2 cut(s)	195, 976
XbaI	TCTAGA	1 cut(s)	760
XceI	RCATGY	1 cut(s)	516
XspI	CTAG	5 cut(s)	207, 761, 804, 828, 981
Zsp2I	ATGCAT	1 cut(s)	947

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.