Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0015366

Physical Location & Seq

Genomic Coordinates Reverse (-)

14587110 .. 14588120

Gene Structure 1011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1172800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTCAATGTCTACCTCCAAAACCCTAGAAAAACCCTTCAAAGCTTTTGAGCAAGGTCAGGCACAGGTGGGTTTTGCTGCTGTGCTGCAGAGAAGCACACCTCCTCCGTCCTCTCAATCCGGCGAGAGAAGAGGAAGGCGAAAGCAGGCCGAGCCAGGGAGGTTTCTTGGTGTGAGGAGAAGGCCTTGGGGGAGATATGCAGCTGAAATCAGAGACCCTAGCACTAAAGAAAGGCACTGGCTTGGCACATTTGACACTGCTCAAGAAGCAGCTTTTGCTTATGACAGAGCTGCCCTCTCCATGAAAGGCTCACAAGCAAGAACCAACTTCATTTACTCTGACAACACAACTTTCCAATCTCTCCTCTCACCCTTTGATGTCCAAACCCTTTTACCACAGCAATCACAGTTTTTCACTACTCAGACTGCTAAACAACAACTCACCAATCAAAACAGTCCACCTCATCATTCTAACGTTTTTCAGTCTGATCAAATCCAATTTCAAAACCCTAATAATATTAGGTCATCATCATCAGCACATGATGAGGATCATGAGGGTTTCTTTTTCTCTGGCGATTCGAGTAATTCTAACTCGGGCTATTTGGCCTGCATTGTTCCTGATAGTTGCCTAAGGCCTCCTTCGGATAATCACCACCCCACAAATTACACAAACTCAAAAGCTTTGAAAATTGATCAAAATTGTAGCTTCGCAAACCCTAATAACTCCACTATTGCTACATTTCCTCTAGATGTTACGAATGTGCAAGCAGCTTCTAATAACAACAATGGAGATCATCAGATTCCTTGCTTTGATGGATTCAGTCATGGATTCTGGGATAACCAGCAGCCATGGGAGTTCAATCCTATGATGATTGAAGATGGATGCATGGGAGCGTTGTATCCGATCGTCGAAAAGTCAAGTGCTTATGGATCTTCTTCTTCATTCTCTTGCTCTCCATCAGTTCCTGCTATTGGTGATGCAGTCATTGAGTTTGGCCACTCACTCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0010015 GO:0010022 GO:0010073 GO:0010101 GO:0010102 GO:0010432 GO:0010451 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1900618 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

337

Amino Acids

37.16

Weight (kDa)

6.05

Isoelectric Point (pI)

59.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	56 - 103	8.5e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18560
fragaria_vesca	FvH4_4g17630
malus_domestica	MD13G1171200.v1.1 MD16G1172800.v1.1
prunus_persica	Prupe.1G139600_v2.0.a1
pyrus_communis	pycom16g14490
rosa_chinensis	RchiOBHm_Chr4g0421551
rosa_laevigata	RLG00000007668
rosa_multiflora	Rmu_sc0010734.1_g000007
rosa_roxburghii	Rroxscaffold_5G00363800
rosa_rugosa	Rorug04G0172700
rosa_samantha	Rh4AG233100 Rh4BG235800 Rh4CG247400 Rh4DG231700
rosa_wichuraiana	Rw4G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	11
AclI	AACGTT	1 cut(s)	474
AclWI	GGATC	2 cut(s)	555, 937
AcoI	YGGCCR	1 cut(s)	994
AfiI	CCNNNNNNNGG	2 cut(s)	156, 971
AgsI	TTSAA	5 cut(s)	40, 503, 685, 859, 875
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	7 cut(s)	44, 203, 272, 290, 680, 705, 770
AluI	AGCT	7 cut(s)	44, 203, 272, 290, 680, 705, 770
Alw26I	GTCTC	1 cut(s)	207
AlwI	GGATC	2 cut(s)	555, 937
AlwNI	CAGNNNCTG	1 cut(s)	965
Ama87I	CYCGRG	1 cut(s)	592
AoxI	GGCC	5 cut(s)	147, 182, 603, 632, 994
ApeKI	GCWGC	7 cut(s)	77, 85, 200, 269, 290, 767, 844
AsuHPI	GGTGA	4 cut(s)	360, 433, 641, 986
AvaI	CYCGRG	1 cut(s)	592
AxyI	CCTNAGG	1 cut(s)	629
BalI	TGGCCA	1 cut(s)	996
BbvI	GCAGC	7 cut(s)	64, 72, 212, 277, 281, 779, 856
BccI	CCATC	3 cut(s)	806, 872, 964
BciT130I	CCWGG	1 cut(s)	156
BciVI	GTATCC	1 cut(s)	909
BclI	TGATCA	2 cut(s)	487, 691
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	3 cut(s)	26, 219, 746
BfmI	CTRYAG	1 cut(s)	86
BfuI	GTATCC	1 cut(s)	909
BisI	GCNGC	7 cut(s)	78, 86, 201, 270, 291, 768, 845
BlsI	GCNGC	7 cut(s)	79, 87, 202, 271, 292, 769, 846
Bme1390I	CCNGG	1 cut(s)	156
BmeT110I	CYCGRG	1 cut(s)	592
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	2 cut(s)	872, 967
BplI	GAGNNNNNCTC	2 cut(s)	279, 311
BpuEI	CTTGAG	1 cut(s)	246
BsaBI	GATNNNNATC	1 cut(s)	546
BsaI	GGTCTC	1 cut(s)	207
BsaJI	CCNNGG	3 cut(s)	155, 185, 848
BsaXI	ACNNNNNCTCC	2 cut(s)	88, 118
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 971
Bse1I	ACTGG	1 cut(s)	242
Bse21I	CCTNAGG	1 cut(s)	629
Bse8I	GATNNNNATC	1 cut(s)	546
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	3 cut(s)	155, 185, 848
BseGI	GGATG	1 cut(s)	887
BseJI	GATNNNNATC	1 cut(s)	546
BseLI	CCNNNNNNNGG	2 cut(s)	156, 971
BseMII	CTCAG	1 cut(s)	434
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	3 cut(s)	93, 190, 353
BseXI	GCAGC	7 cut(s)	64, 72, 212, 277, 281, 779, 856
Bsh1285I	CGRYCG	1 cut(s)	906
BshFI	GGCC	5 cut(s)	149, 184, 605, 634, 996
BsiEI	CGRYCG	1 cut(s)	906
BsiHKCI	CYCGRG	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	120
BslI	CCNNNNNNNGG	2 cut(s)	156, 971
BsmAI	GTCTC	1 cut(s)	207
BsnI	GGCC	5 cut(s)	149, 184, 605, 634, 996
Bso31I	GGTCTC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	592
Bsp143I	GATC	6 cut(s)	487, 547, 691, 790, 903, 929
Bsp19I	CCATGG	1 cut(s)	848
BspANI	GGCC	5 cut(s)	149, 184, 605, 634, 996
BspCNI	CTCAG	1 cut(s)	433
BspHI	TCATGA	1 cut(s)	550
BspMAI	CTGCAG	1 cut(s)	90
BspPI	GGATC	2 cut(s)	555, 937
BspTNI	GGTCTC	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	3 cut(s)	155, 185, 848
BssMI	GATC	6 cut(s)	487, 547, 691, 790, 903, 929
BssT1I	CCWWGG	2 cut(s)	185, 848
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	408, 455
Bst6I	CTCTTC	1 cut(s)	124
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstC8I	GCNNGC	3 cut(s)	147, 607, 765
BstDEI	CTNAG	2 cut(s)	420, 629
BstDSI	CCRYGG	1 cut(s)	848
BstF5I	GGATG	1 cut(s)	887
BstKTI	GATC	6 cut(s)	490, 550, 694, 793, 906, 932
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	6 cut(s)	487, 547, 691, 790, 903, 929
BstMCI	CGRYCG	1 cut(s)	906
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 266, 275
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstSFI	CTRYAG	1 cut(s)	86
BstV1I	GCAGC	7 cut(s)	64, 72, 212, 277, 281, 779, 856
BstX2I	RGATCY	1 cut(s)	929
BstYI	RGATCY	1 cut(s)	929
Bsu36I	CCTNAGG	1 cut(s)	629
BsuI	GTATCC	1 cut(s)	909
BsuRI	GGCC	5 cut(s)	149, 184, 605, 634, 996
BtgI	CCRYGG	1 cut(s)	848
BtsCI	GGATG	1 cut(s)	887
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	235, 255
Cac8I	GCNNGC	3 cut(s)	147, 607, 765
CaiI	CAGNNNCTG	1 cut(s)	965
CciI	TCATGA	1 cut(s)	550
CviAII	CATG	6 cut(s)	301, 539, 551, 824, 849, 886
DdeI	CTNAG	2 cut(s)	420, 629
DpnI	GATC	6 cut(s)	489, 549, 693, 792, 905, 931
DpnII	GATC	6 cut(s)	487, 547, 691, 790, 903, 929
EaeI	YGGCCR	1 cut(s)	994
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco130I	CCWWGG	2 cut(s)	185, 848
Eco147I	AGGCCT	2 cut(s)	184, 634
Eco31I	GGTCTC	1 cut(s)	207
Eco81I	CCTNAGG	1 cut(s)	629
Eco88I	CYCGRG	1 cut(s)	592
EcoRII	CCWGG	1 cut(s)	154
EcoT14I	CCWWGG	2 cut(s)	185, 848
EcoT22I	ATGCAT	1 cut(s)	887
ErhI	CCWWGG	2 cut(s)	185, 848
FaeI	CATG	6 cut(s)	304, 542, 554, 827, 852, 889
FalI	AAGNNNNNCTT	2 cut(s)	622, 654
FatI	CATG	6 cut(s)	300, 538, 550, 823, 848, 885
FbaI	TGATCA	2 cut(s)	487, 691
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	7 cut(s)	78, 86, 201, 270, 291, 768, 845
FokI	GGATG	1 cut(s)	894
Fsp4HI	GCNGC	7 cut(s)	78, 86, 201, 270, 291, 768, 845
FspBI	CTAG	3 cut(s)	26, 219, 746
GluI	GCNGC	7 cut(s)	78, 86, 201, 270, 291, 768, 845
HaeIII	GGCC	5 cut(s)	149, 184, 605, 634, 996
HapII	CCGG	1 cut(s)	120
Hin1II	CATG	6 cut(s)	304, 542, 554, 827, 852, 889
HindIII	AAGCTT	2 cut(s)	42, 678
HinfI	GANTC	4 cut(s)	575, 799, 816, 828
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	4 cut(s)	360, 433, 641, 986
Hpy166II	GTNNAC	2 cut(s)	12, 458
Hpy188I	TCNGA	7 cut(s)	212, 340, 423, 487, 643, 798, 903
Hpy188III	TCNNGA	4 cut(s)	263, 551, 617, 746
Hpy8I	GTNNAC	2 cut(s)	12, 458
Hpy99I	CGWCG	1 cut(s)	911
HpyAV	CCTTC	4 cut(s)	46, 129, 174, 648
HpyCH4III	ACNGT	2 cut(s)	408, 455
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	6 cut(s)	88, 200, 609, 763, 885, 980
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 266, 275
HpyF3I	CTNAG	2 cut(s)	420, 629
HpySE526I	ACGT	1 cut(s)	474
Hsp92II	CATG	6 cut(s)	304, 542, 554, 827, 852, 889
Ksp22I	TGATCA	2 cut(s)	487, 691
Kzo9I	GATC	6 cut(s)	487, 547, 691, 790, 903, 929
LmnI	GCTCC	1 cut(s)	890
Lsp1109I	GCAGC	7 cut(s)	64, 72, 212, 277, 281, 779, 856
LweI	GCATC	2 cut(s)	872, 967
MaeI	CTAG	3 cut(s)	26, 219, 746
MaeII	ACGT	1 cut(s)	474
MaeIII	GTNAC	1 cut(s)	751
MalI	GATC	6 cut(s)	489, 549, 693, 792, 905, 931
MboI	GATC	6 cut(s)	487, 547, 691, 790, 903, 929
MboII	GAAGA	5 cut(s)	141, 887, 924, 927, 930
MflI	RGATCY	1 cut(s)	929
MlsI	TGGCCA	1 cut(s)	996
MluCI	AATT	5 cut(s)	497, 583, 661, 687, 697
MluNI	TGGCCA	1 cut(s)	996
Mox20I	TGGCCA	1 cut(s)	996
Mph1103I	ATGCAT	1 cut(s)	887
MscI	TGGCCA	1 cut(s)	996
Msp20I	TGGCCA	1 cut(s)	996
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	3 cut(s)	151, 266, 275
NcoI	CCATGG	1 cut(s)	848
NdeII	GATC	6 cut(s)	487, 547, 691, 790, 903, 929
NlaIII	CATG	6 cut(s)	304, 542, 554, 827, 852, 889
NmeAIII	GCCGAG	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	887
PagI	TCATGA	1 cut(s)	550
PceI	AGGCCT	2 cut(s)	184, 634
PfeI	GAWTC	4 cut(s)	575, 799, 816, 828
PkrI	GCNGC	7 cut(s)	79, 87, 202, 271, 292, 769, 846
Ple19I	CGATCG	1 cut(s)	906
Psp1406I	AACGTT	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PstI	CTGCAG	1 cut(s)	90
PstNI	CAGNNNCTG	1 cut(s)	965
PsuI	RGATCY	1 cut(s)	929
PvuI	CGATCG	1 cut(s)	906
PvuII	CAGCTG	1 cut(s)	203
SatI	GCNGC	7 cut(s)	78, 86, 201, 270, 291, 768, 845
Sau3AI	GATC	6 cut(s)	487, 547, 691, 790, 903, 929
ScrFI	CCNGG	1 cut(s)	156
SfaNI	GCATC	2 cut(s)	872, 967
SfcI	CTRYAG	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
Sse9I	AATT	5 cut(s)	497, 583, 661, 687, 697
SseBI	AGGCCT	2 cut(s)	184, 634
SspI	AATATT	1 cut(s)	517
SspMI	CTAG	3 cut(s)	26, 219, 746
StuI	AGGCCT	2 cut(s)	184, 634
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	2 cut(s)	185, 848
TaaI	ACNGT	2 cut(s)	408, 455
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	2 cut(s)	578, 909
TasI	AATT	5 cut(s)	497, 583, 661, 687, 697
TfiI	GAWTC	4 cut(s)	575, 799, 816, 828
TscAI	CASTG	2 cut(s)	242, 262
TseI	GCWGC	7 cut(s)	77, 85, 200, 269, 290, 767, 844
TspDTI	ATGAA	3 cut(s)	317, 319, 930
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	2 cut(s)	242, 262
XbaI	TCTAGA	1 cut(s)	745
XmiI	GTMKAC	1 cut(s)	11
XspI	CTAG	3 cut(s)	26, 219, 746
Zsp2I	ATGCAT	1 cut(s)	887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.