AT5G19070

transmembrane protein 64-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010842
Physical Location & Seq
Forward (+)
6375159 .. 6377667
2509 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G19070.2

Sequence Viewer

Length: 843 bp
ATGGCGTTCACGTGGGGATCTGCTCTCCGGATTTCTGTTCTCCTTATCCTTGTAGCTGCAATTGTCTTAGCTTGTTATTTTCTCCCTGTTGAGAAGCTATTGAAGGATTTTTTGTTATGGGTTGAACAAGATCTAGGGCCTTGGGGACCTTTTGCCCTAGCTGTTGCGTACATTCCTCTAACAGTTTTGGCTGTTCCTGCCTCGGTTCTCACGCTCGGTGGTGGCTACCTTTTTGGGCTGCCAATTGGTTTTGTGGCGGACTCAGTCGGTGCTACACTTGGCTCAGGAGCTGCATTTCTACTAGGCCGTACGATTGGAAAACCTTTTGTAGTTGCAAAATTAAAGGATTATCCTCAGTTTCAATCAGTGGCACTCGCGATAGAGAAATCCGGCTTCAAGATATGCTTGTTGCTCCGGCTTGCTCCTCTTCTTCCGTTCAGCATGTTGAACTACCTCTTATCTGTCACGCCAATTCGGCTAGGTCCATACTTGCTTTCTTCGTGGTTAGGGATGATGCCAATAACACTTGCGTTAGTGTATGTTGGAACAACTCTAAAAGACCTTTCTGATGTAACTCACAAGTGGAGCGAGTTCTCGCCAGGTCGCTGGGCGTTCTTGATTTCGAGCCTTGTAATATCCGTGATATTAATGGTGTGTGTTACAAAGGTGGCGAAGGACGCTCTAAGAAAAGCTTTAGCAGAGCACGGAGGAGACATGAACGAAGCGGTTGCAGCCTTGCCGGAGCTGACCGTTACTGATGATGCTTCGACGGATTTAAATGAGCCTCTCTTGATAAAGATAGATGCACAACAACCTCAAGACCAAGTAAACCATAGTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

280

Amino Acids

30.18

Weight (kDa)

6.07

Isoelectric Point (pI)

32.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 65 - 183 2.6e-22 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010842)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19070 AT5G19070
fragaria_vesca FvH4_4g14490 FvH4_4g14490 FvH4_4g14490 FvH4_4g14490
malus_domestica MD13G1183100.v1.1 MD16G1184000.v1.1
prunus_persica Prupe.1G151400_v2.0.a1
pyrus_communis pycom13g15830 pycom16g15450
rosa_chinensis RchiOBHm_Chr4g0418341
rosa_laevigata RLG00000007873 RLG00000007874
rosa_multiflora Rmu_sc0009909.1_g000002
rosa_roxburghii Rroxscaffold_5G00361530
rosa_rugosa Rorug04G0152300
rosa_samantha Rh4AG213900 Rh4BG216500
rosa_wichuraiana Rw4G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 377
AccIII TCCGGA 1 cut(s) 27
AciI CCGC 2 cut(s) 257, 725
AclWI GGATC 1 cut(s) 25
AcvI CACGTG 1 cut(s) 12
AfaI GTAC 2 cut(s) 170, 310
AgsI TTSAA 5 cut(s) 103, 125, 362, 397, 448
AjnI CCWGG 1 cut(s) 598
AluBI AGCT 7 cut(s) 56, 71, 97, 161, 290, 692, 745
AluI AGCT 7 cut(s) 56, 71, 97, 161, 290, 692, 745
Alw21I GWGCWC 1 cut(s) 705
Alw26I GTCTC 1 cut(s) 705
AlwI GGATC 1 cut(s) 25
AlwNI CAGNNNCTG 1 cut(s) 290
Aor13HI TCCGGA 1 cut(s) 27
AoxI GGCC 2 cut(s) 137, 304
ApeKI GCWGC 4 cut(s) 56, 238, 290, 731
AseI ATTAAT 1 cut(s) 647
AspS9I GGNCC 3 cut(s) 137, 146, 482
AvaII GGWCC 2 cut(s) 146, 482
BbrPI CACGTG 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 705
BbvI GCAGC 4 cut(s) 43, 225, 277, 743
BceAI ACGGC 1 cut(s) 291
BcgI CGANNNNNNTGC 2 cut(s) 710, 744
BciT130I CCWGG 1 cut(s) 600
BcoDI GTCTC 1 cut(s) 705
BfaI CTAG 4 cut(s) 134, 158, 302, 479
BglI GCCNNNNNGGC 1 cut(s) 475
BglII AGATCT 1 cut(s) 130
BisI GCNGC 4 cut(s) 57, 239, 291, 732
BlsI GCNGC 4 cut(s) 58, 240, 292, 733
Bme1390I CCNGG 1 cut(s) 600
Bme18I GGWCC 2 cut(s) 146, 482
BmgT120I GGNCC 3 cut(s) 137, 146, 482
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 600
BmsI GCATC 3 cut(s) 504, 751, 793
Bpu10I CCTNAGC 1 cut(s) 283
BpuEI CTTGAG 1 cut(s) 801
BsaAI YACGTR 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 140, 201
BsaWI WCCGGW 1 cut(s) 27
BseAI TCCGGA 1 cut(s) 27
BseBI CCWGG 1 cut(s) 600
BseDI CCNNGG 2 cut(s) 140, 201
BseGI GGATG 1 cut(s) 516
BseMII CTCAG 3 cut(s) 276, 297, 368
BseRI GAGGAG 2 cut(s) 414, 723
BseXI GCAGC 4 cut(s) 43, 225, 277, 743
BseYI CCCAGC 1 cut(s) 606
Bsh1236I CGCG 1 cut(s) 377
BshFI GGCC 2 cut(s) 139, 306
BsiHKAI GWGCWC 1 cut(s) 705
BsiSI CCGG 4 cut(s) 28, 390, 415, 740
BsiWI CGTACG 1 cut(s) 308
BslFI GGGAC 1 cut(s) 159
BsmAI GTCTC 1 cut(s) 705
BsmFI GGGAC 1 cut(s) 159
BsnI GGCC 2 cut(s) 139, 306
Bsp1286I GDGCHC 1 cut(s) 705
Bsp13I TCCGGA 1 cut(s) 27
Bsp143I GATC 2 cut(s) 17, 130
Bsp68I TCGCGA 1 cut(s) 377
BspACI CCGC 2 cut(s) 257, 725
BspANI GGCC 2 cut(s) 139, 306
BspCNI CTCAG 3 cut(s) 275, 296, 367
BspEI TCCGGA 1 cut(s) 27
BspFNI CGCG 1 cut(s) 377
BspLI GGNNCC 1 cut(s) 147
BspPI GGATC 1 cut(s) 25
BssECI CCNNGG 2 cut(s) 140, 201
BssMI GATC 2 cut(s) 17, 130
BssT1I CCWWGG 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 600
Bst4CI ACNGT 2 cut(s) 184, 751
Bst6I CTCTTC 1 cut(s) 432
BstBAI YACGTR 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 5 cut(s) 67, 262, 283, 354, 683
BstF5I GGATG 1 cut(s) 516
BstFNI CGCG 1 cut(s) 377
BstKTI GATC 2 cut(s) 20, 133
BstMAI GTCTC 1 cut(s) 705
BstMBI GATC 2 cut(s) 17, 130
BstMWI GCNNNNNNNGC 4 cut(s) 197, 475, 677, 731
BstNI CCWGG 1 cut(s) 600
BstNSI RCATGY 1 cut(s) 445
BstSCI CCNGG 1 cut(s) 598
BstUI CGCG 1 cut(s) 377
BstV1I GCAGC 4 cut(s) 43, 225, 277, 743
BstX2I RGATCY 2 cut(s) 17, 130
BstXI CCANNNNNNTGG 1 cut(s) 606
BstYI RGATCY 2 cut(s) 17, 130
BsuRI GGCC 2 cut(s) 139, 306
BtsCI GGATG 1 cut(s) 516
BtsIMutI CAGTG 1 cut(s) 372
BtuMI TCGCGA 1 cut(s) 377
Cac8I GCNNGC 1 cut(s) 420
CaiI CAGNNNCTG 1 cut(s) 290
Cfr13I GGNCC 3 cut(s) 137, 146, 482
CseI GACGC 1 cut(s) 686
Csp6I GTAC 2 cut(s) 169, 309
CviAII CATG 2 cut(s) 442, 715
CviQI GTAC 2 cut(s) 169, 309
DdeI CTNAG 5 cut(s) 67, 262, 283, 354, 683
DpnI GATC 2 cut(s) 19, 132
DpnII GATC 2 cut(s) 17, 130
DraI TTTAAA 1 cut(s) 777
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
EciI GGCGGA 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 140
Eco47I GGWCC 2 cut(s) 146, 482
Eco72I CACGTG 1 cut(s) 12
EcoO109I RGGNCCY 2 cut(s) 137, 146
EcoRII CCWGG 1 cut(s) 598
EcoT14I CCWWGG 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 140
FaeI CATG 2 cut(s) 445, 718
FaiI YATR 7 cut(s) 118, 403, 443, 487, 540, 716, 834
FalI AAGNNNNNCTT 4 cut(s) 389, 421, 676, 708
FaqI GGGAC 1 cut(s) 159
FatI CATG 2 cut(s) 441, 714
Fnu4HI GCNGC 4 cut(s) 57, 239, 291, 732
FokI GGATG 1 cut(s) 523
Fsp4HI GCNGC 4 cut(s) 57, 239, 291, 732
FspBI CTAG 4 cut(s) 134, 158, 302, 479
GluI GCNGC 4 cut(s) 57, 239, 291, 732
GsaI CCCAGC 1 cut(s) 610
HaeIII GGCC 2 cut(s) 139, 306
HapII CCGG 4 cut(s) 28, 390, 415, 740
HgaI GACGC 1 cut(s) 686
Hin1II CATG 2 cut(s) 445, 718
HindIII AAGCTT 1 cut(s) 690
HinfI GANTC 1 cut(s) 260
HpaII CCGG 4 cut(s) 28, 390, 415, 740
Hpy166II GTNNAC 2 cut(s) 9, 829
Hpy188I TCNGA 1 cut(s) 568
Hpy188III TCNNGA 7 cut(s) 28, 285, 376, 397, 616, 790, 818
Hpy8I GTNNAC 2 cut(s) 9, 829
Hpy99I CGWCG 1 cut(s) 772
HpyAV CCTTC 2 cut(s) 97, 667
HpyCH4III ACNGT 2 cut(s) 184, 751
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 5 cut(s) 59, 293, 335, 731, 806
HpyF10VI GCNNNNNNNGC 4 cut(s) 197, 475, 677, 731
HpyF3I CTNAG 5 cut(s) 67, 262, 283, 354, 683
HpySE526I ACGT 1 cut(s) 11
Hsp92II CATG 2 cut(s) 445, 718
Kpn2I TCCGGA 1 cut(s) 27
Kzo9I GATC 2 cut(s) 17, 130
LmnI GCTCC 5 cut(s) 287, 417, 427, 585, 742
Lsp1109I GCAGC 4 cut(s) 43, 225, 277, 743
LweI GCATC 3 cut(s) 504, 751, 793
MaeI CTAG 4 cut(s) 134, 158, 302, 479
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 4 cut(s) 463, 571, 658, 751
MalI GATC 2 cut(s) 19, 132
MboI GATC 2 cut(s) 17, 130
MboII GAAGA 3 cut(s) 419, 422, 489
MfeI CAATTG 2 cut(s) 60, 243
MflI RGATCY 2 cut(s) 17, 130
MhlI GDGCHC 1 cut(s) 705
MluCI AATT 4 cut(s) 60, 243, 338, 471
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 1 cut(s) 523
MnlI CCTC 8 cut(s) 186, 211, 363, 435, 464, 701, 795, 825
MroI TCCGGA 1 cut(s) 27
MseI TTAA 4 cut(s) 341, 647, 776, 841
MspI CCGG 4 cut(s) 28, 390, 415, 740
MspR9I CCNGG 1 cut(s) 600
MunI CAATTG 2 cut(s) 60, 243
MvaI CCWGG 1 cut(s) 600
MvnI CGCG 1 cut(s) 377
MwoI GCNNNNNNNGC 4 cut(s) 197, 475, 677, 731
NdeII GATC 2 cut(s) 17, 130
NlaIII CATG 2 cut(s) 445, 718
NlaIV GGNNCC 1 cut(s) 147
NmuCI GTSAC 1 cut(s) 463
NruI TCGCGA 1 cut(s) 377
NspI RCATGY 1 cut(s) 445
Pfl23II CGTACG 1 cut(s) 308
PflFI GACNNNGTC 1 cut(s) 263
PkrI GCNGC 4 cut(s) 58, 240, 292, 733
PleI GAGTC 1 cut(s) 254
PmaCI CACGTG 1 cut(s) 12
PmlI CACGTG 1 cut(s) 12
PpsI GAGTC 1 cut(s) 254
Ppu21I YACGTR 1 cut(s) 12
PpuMI RGGWCCY 1 cut(s) 146
PshBI ATTAAT 1 cut(s) 647
Psp5II RGGWCCY 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 598
PspCI CACGTG 1 cut(s) 12
PspFI CCCAGC 1 cut(s) 606
PspGI CCWGG 1 cut(s) 598
PspLI CGTACG 1 cut(s) 308
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 3 cut(s) 137, 146, 482
PspPPI RGGWCCY 1 cut(s) 146
PstNI CAGNNNCTG 1 cut(s) 290
PsuI RGATCY 2 cut(s) 17, 130
PsyI GACNNNGTC 1 cut(s) 263
RruI TCGCGA 1 cut(s) 377
RsaI GTAC 2 cut(s) 170, 310
RsaNI GTAC 2 cut(s) 169, 309
SaqAI TTAA 4 cut(s) 341, 647, 776, 841
SatI GCNGC 4 cut(s) 57, 239, 291, 732
Sau3AI GATC 2 cut(s) 17, 130
Sau96I GGNCC 3 cut(s) 137, 146, 482
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 1 cut(s) 600
SduI GDGCHC 1 cut(s) 705
SfaNI GCATC 3 cut(s) 504, 751, 793
SinI GGWCC 2 cut(s) 146, 482
SmiI ATTTAAAT 1 cut(s) 777
SmlI CTYRAG 1 cut(s) 816
SmoI CTYRAG 1 cut(s) 816
Sse9I AATT 4 cut(s) 60, 243, 338, 471
SsiI CCGC 2 cut(s) 257, 725
SspMI CTAG 4 cut(s) 134, 158, 302, 479
StyD4I CCNGG 1 cut(s) 598
StyI CCWWGG 1 cut(s) 140
SwaI ATTTAAAT 1 cut(s) 777
TaaI ACNGT 2 cut(s) 184, 751
TaiI ACGT 1 cut(s) 14
TaqI TCGA 2 cut(s) 623, 767
TasI AATT 4 cut(s) 60, 243, 338, 471
Tru1I TTAA 4 cut(s) 341, 647, 776, 841
Tru9I TTAA 4 cut(s) 341, 647, 776, 841
TscAI CASTG 1 cut(s) 372
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 4 cut(s) 56, 238, 290, 731
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 1 cut(s) 731
TspGWI ACGGA 4 cut(s) 423, 628, 720, 785
TspRI CASTG 1 cut(s) 372
Tth111I GACNNNGTC 1 cut(s) 263
VpaK11BI GGWCC 2 cut(s) 146, 482
VspI ATTAAT 1 cut(s) 647
XceI RCATGY 1 cut(s) 445
XspI CTAG 4 cut(s) 134, 158, 302, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.