Rmu_sc0009909.1_g000002

TVP38 TMEM64 family membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009909.1
OG0010842
Physical Location & Seq
Reverse (-)
13490 .. 17775
4286 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009909.1_g000002.1.cds

Sequence Viewer

Length: 903 bp
ctgaggcctcgtttgcctttgaagcaacccaacatatacgacccagatagcgaggagtgtaggccttggcgtcgcaggatttctatggctctcacatggggctccgcgctgaggatcacactccttctcctcctcctcgccgctgttgccaccgcctgtttcactctccccgttgaaaagattttgaaggacttcttattatgggttgataaggatcttggcccgtggggtccatttgtgctggccgttgcatacattcctttaacggtcttggcagtaccagcttcagtacttaccctcggtggtggttatctttttggcctgcctgtcggctttgttgccgactcaattggtgccactataggtgcaggggctgcattccttcttggcagaactattgggagatcattcgtcatttccaagttgaaggattatcctcagtttcgtgcagttgcgattgcaatccgaaaatctggatttaagattgttttgctgcttcgtcttgttcccttacttccattcaacatgttaaattacctcctgtcggtgactcctgttccaattggagaatacatgcttgcttcatggttaggaatgatgccgataacacttgcactagtatatgttggaacgactctcaaggatctttctgatgtgacccatggttggggtgaattttcgaagacccgttgggctgtcatcatactgggccttgtagtatccgtgattctaatgtttcttgttacaagagttgccaaggctgctttggaaaaagctttggctgaaaatgaggatcttgatatcataacgccacctgagttacctgtttctgatacacctggtcatctcgaccagccgcttttaatcaagatagatccctctgaagaccatcatgaaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

300

Amino Acids

32.88

Weight (kDa)

8.49

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010842)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19070 AT5G19070
fragaria_vesca FvH4_4g14490 FvH4_4g14490 FvH4_4g14490 FvH4_4g14490
malus_domestica MD13G1183100.v1.1 MD16G1184000.v1.1
prunus_persica Prupe.1G151400_v2.0.a1
pyrus_communis pycom13g15830 pycom16g15450
rosa_chinensis RchiOBHm_Chr4g0418341
rosa_laevigata RLG00000007873 RLG00000007874
rosa_multiflora Rmu_sc0009909.1_g000002
rosa_roxburghii Rroxscaffold_5G00361530
rosa_rugosa Rorug04G0152300
rosa_samantha Rh4AG213900 Rh4BG216500
rosa_wichuraiana Rw4G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 353
AccII CGCG 1 cut(s) 107
AciI CCGC 4 cut(s) 105, 141, 153, 857
AclWI GGATC 5 cut(s) 122, 222, 651, 801, 869
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 1 cut(s) 674
AcuI CTGAAG 2 cut(s) 270, 903
AcyI GRCGYC 1 cut(s) 70
AfaI GTAC 2 cut(s) 279, 291
AfiI CCNNNNNNNGG 4 cut(s) 111, 544, 666, 667
AflIII ACRYGT 1 cut(s) 525
AgsI TTSAA 5 cut(s) 22, 176, 187, 427, 523
AhlI ACTAGT 1 cut(s) 616
AjnI CCWGG 1 cut(s) 838
AluBI AGCT 2 cut(s) 284, 776
AluI AGCT 2 cut(s) 284, 776
AlwI GGATC 5 cut(s) 122, 222, 651, 801, 869
AlwNI CAGNNNCTG 1 cut(s) 374
AoxI GGCC 6 cut(s) 5, 62, 220, 243, 319, 709
ApeKI GCWGC 3 cut(s) 374, 493, 761
ApoI RAATTY 1 cut(s) 674
Asp700I GAANNNNTTC 1 cut(s) 191
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 3 cut(s) 221, 230, 709
AsuHPI GGTGA 2 cut(s) 559, 683
AsuII TTCGAA 1 cut(s) 680
AvaII GGWCC 1 cut(s) 230
BanI GGYRCC 1 cut(s) 353
BanII GRGCYC 1 cut(s) 104
BbsI GAAGAC 2 cut(s) 689, 891
BbvCI CCTCAGC 1 cut(s) 110
BbvI GCAGC 3 cut(s) 361, 480, 748
BccI CCATC 1 cut(s) 897
BceAI ACGGC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 840
BciVI GTATCC 1 cut(s) 730
BcuI ACTAGT 1 cut(s) 616
BfaI CTAG 1 cut(s) 617
BfmI CTRYAG 1 cut(s) 360
BfuI GTATCC 1 cut(s) 730
BisI GCNGC 5 cut(s) 141, 375, 494, 762, 857
BlsI GCNGC 5 cut(s) 142, 376, 495, 763, 858
BmcAI AGTACT 1 cut(s) 291
Bme1390I CCNGG 1 cut(s) 840
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 3 cut(s) 221, 230, 709
BmiI GGNNCC 3 cut(s) 103, 231, 355
BmrFI CCNGG 1 cut(s) 840
BmrI ACTGGG 1 cut(s) 716
BmsI GCATC 1 cut(s) 588
BmuI ACTGGG 1 cut(s) 716
BpiI GAAGAC 2 cut(s) 689, 891
Bpu10I CCTNAGC 1 cut(s) 110
Bpu14I TTCGAA 1 cut(s) 680
BpuEI CTTGAG 1 cut(s) 623
BsaBI GATNNNNATC 2 cut(s) 213, 461
BsaHI GRCGYC 1 cut(s) 70
BsaJI CCNNGG 5 cut(s) 65, 224, 298, 661, 756
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 4 cut(s) 111, 544, 666, 667
Bse1I ACTGG 1 cut(s) 711
Bse8I GATNNNNATC 2 cut(s) 213, 461
BseBI CCWGG 1 cut(s) 840
BseDI CCNNGG 5 cut(s) 65, 224, 298, 661, 756
BseJI GATNNNNATC 2 cut(s) 213, 461
BseLI CCNNNNNNNGG 4 cut(s) 111, 544, 666, 667
BseMII CTCAG 3 cut(s) 101, 452, 807
BseNI ACTGG 1 cut(s) 711
BseRI GAGGAG 4 cut(s) 68, 119, 122, 125
BseXI GCAGC 3 cut(s) 361, 480, 748
BsgI GTGCAG 2 cut(s) 387, 468
Bsh1236I CGCG 1 cut(s) 107
BshFI GGCC 6 cut(s) 7, 64, 222, 245, 321, 711
BshNI GGYRCC 1 cut(s) 353
BslI CCNNNNNNNGG 4 cut(s) 111, 544, 666, 667
BsmI GAATGC 1 cut(s) 377
BsnI GGCC 6 cut(s) 7, 64, 222, 245, 321, 711
Bsp119I TTCGAA 1 cut(s) 680
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 6 cut(s) 114, 214, 404, 643, 793, 874
Bsp19I CCATGG 1 cut(s) 661
BspACI CCGC 4 cut(s) 105, 141, 153, 857
BspANI GGCC 6 cut(s) 7, 64, 222, 245, 321, 711
BspCNI CTCAG 3 cut(s) 102, 451, 808
BspFNI CGCG 1 cut(s) 107
BspHI TCATGA 1 cut(s) 892
BspLI GGNNCC 3 cut(s) 103, 231, 355
BspPI GGATC 5 cut(s) 122, 222, 651, 801, 869
BspT104I TTCGAA 1 cut(s) 680
BspT107I GGYRCC 1 cut(s) 353
BsrI ACTGG 1 cut(s) 711
BssECI CCNNGG 5 cut(s) 65, 224, 298, 661, 756
BssMI GATC 6 cut(s) 114, 214, 404, 643, 793, 874
BssNI GRCGYC 1 cut(s) 70
BssT1I CCWWGG 3 cut(s) 65, 661, 756
Bst2UI CCWGG 1 cut(s) 840
Bst4CI ACNGT 1 cut(s) 268
BstACI GRCGYC 1 cut(s) 70
BstAPI GCANNNNNTGC 1 cut(s) 374
BstBI TTCGAA 1 cut(s) 680
BstC8I GCNNGC 3 cut(s) 243, 323, 579
BstDEI CTNAG 4 cut(s) 2, 110, 438, 816
BstDSI CCRYGG 2 cut(s) 224, 661
BstFNI CGCG 1 cut(s) 107
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 6 cut(s) 117, 217, 407, 646, 796, 877
BstMBI GATC 6 cut(s) 114, 214, 404, 643, 793, 874
BstMWI GCNNNNNNNGC 6 cut(s) 13, 22, 146, 281, 374, 761
BstNI CCWGG 1 cut(s) 840
BstNSI RCATGY 2 cut(s) 529, 577
BstSCI CCNGG 1 cut(s) 838
BstSFI CTRYAG 1 cut(s) 360
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 3 cut(s) 361, 480, 748
BstV2I GAAGAC 2 cut(s) 689, 891
BstX2I RGATCY 4 cut(s) 214, 643, 793, 874
BstYI RGATCY 4 cut(s) 214, 643, 793, 874
BsuI GTATCC 1 cut(s) 730
BsuRI GGCC 6 cut(s) 7, 64, 222, 245, 321, 711
BtgI CCRYGG 2 cut(s) 224, 661
Cac8I GCNNGC 3 cut(s) 243, 323, 579
CaiI CAGNNNCTG 1 cut(s) 374
CciI TCATGA 1 cut(s) 892
CfoI GCGC 1 cut(s) 109
Cfr13I GGNCC 3 cut(s) 221, 230, 709
CseI GACGC 1 cut(s) 59
CsiI ACCWGGT 1 cut(s) 838
Csp6I GTAC 2 cut(s) 278, 290
CviAII CATG 6 cut(s) 96, 526, 574, 585, 662, 893
CviQI GTAC 2 cut(s) 278, 290
DdeI CTNAG 4 cut(s) 2, 110, 438, 816
DpnI GATC 6 cut(s) 116, 216, 406, 645, 795, 876
DpnII GATC 6 cut(s) 114, 214, 404, 643, 793, 874
EaeI YGGCCR 1 cut(s) 243
Eco130I CCWWGG 3 cut(s) 65, 661, 756
Eco147I AGGCCT 2 cut(s) 7, 64
Eco24I GRGCYC 1 cut(s) 104
Eco32I GATATC 1 cut(s) 802
Eco47I GGWCC 1 cut(s) 230
Eco57I CTGAAG 2 cut(s) 270, 903
EcoRII CCWGG 1 cut(s) 838
EcoRV GATATC 1 cut(s) 802
EcoT14I CCWWGG 3 cut(s) 65, 661, 756
EcoT38I GRGCYC 1 cut(s) 104
ErhI CCWWGG 3 cut(s) 65, 661, 756
FaeI CATG 6 cut(s) 99, 529, 577, 588, 665, 896
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FatI CATG 6 cut(s) 95, 525, 573, 584, 661, 892
Fnu4HI GCNGC 5 cut(s) 141, 375, 494, 762, 857
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 5 cut(s) 141, 375, 494, 762, 857
FspBI CTAG 1 cut(s) 617
GlaI GCGC 1 cut(s) 108
GluI GCNGC 5 cut(s) 141, 375, 494, 762, 857
HaeIII GGCC 6 cut(s) 7, 64, 222, 245, 321, 711
HgaI GACGC 1 cut(s) 59
HhaI GCGC 1 cut(s) 109
Hin1I GRCGYC 1 cut(s) 70
Hin1II CATG 6 cut(s) 99, 529, 577, 588, 665, 896
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HindIII AAGCTT 1 cut(s) 774
HinfI GANTC 4 cut(s) 344, 550, 634, 727
HphI GGTGA 2 cut(s) 559, 683
Hpy188I TCNGA 4 cut(s) 467, 652, 832, 883
Hpy188III TCNNGA 5 cut(s) 474, 797, 848, 868, 893
Hpy99I CGWCG 1 cut(s) 75
HpyAV CCTTC 4 cut(s) 134, 181, 392, 421
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 6 cut(s) 251, 368, 377, 449, 461, 614
HpyF10VI GCNNNNNNNGC 6 cut(s) 13, 22, 146, 281, 374, 761
HpyF3I CTNAG 4 cut(s) 2, 110, 438, 816
Hsp92I GRCGYC 1 cut(s) 70
Hsp92II CATG 6 cut(s) 99, 529, 577, 588, 665, 896
HspAI GCGC 1 cut(s) 107
Kzo9I GATC 6 cut(s) 114, 214, 404, 643, 793, 874
LmnI GCTCC 1 cut(s) 107
Lsp1109I GCAGC 3 cut(s) 361, 480, 748
LweI GCATC 1 cut(s) 588
MabI ACCWGGT 1 cut(s) 838
MaeI CTAG 1 cut(s) 617
MaeIII GTNAC 4 cut(s) 547, 655, 742, 819
MalI GATC 6 cut(s) 116, 216, 406, 645, 795, 876
MboI GATC 6 cut(s) 114, 214, 404, 643, 793, 874
MboII GAAGA 2 cut(s) 694, 896
MfeI CAATTG 2 cut(s) 348, 561
MflI RGATCY 4 cut(s) 214, 643, 793, 874
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 4 cut(s) 348, 532, 561, 674
MlyI GAGTC 3 cut(s) 338, 544, 628
MmeI TCCRAC 1 cut(s) 607
MroXI GAANNNNTTC 1 cut(s) 191
MseI TTAA 4 cut(s) 263, 480, 530, 863
MspA1I CMGCKG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 840
MunI CAATTG 2 cut(s) 348, 561
Mva1269I GAATGC 1 cut(s) 377
MvaI CCWGG 1 cut(s) 840
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 6 cut(s) 13, 22, 146, 281, 374, 761
NcoI CCATGG 1 cut(s) 661
NdeII GATC 6 cut(s) 114, 214, 404, 643, 793, 874
NlaIII CATG 6 cut(s) 99, 529, 577, 588, 665, 896
NlaIV GGNNCC 3 cut(s) 103, 231, 355
NmuCI GTSAC 2 cut(s) 547, 655
NspI RCATGY 2 cut(s) 529, 577
NspV TTCGAA 1 cut(s) 680
PagI TCATGA 1 cut(s) 892
PceI AGGCCT 2 cut(s) 7, 64
PciI ACATGT 1 cut(s) 525
PctI GAATGC 1 cut(s) 377
PdmI GAANNNNTTC 1 cut(s) 191
PfeI GAWTC 1 cut(s) 727
PkrI GCNGC 5 cut(s) 142, 376, 495, 763, 858
PleI GAGTC 3 cut(s) 338, 544, 628
PpsI GAGTC 3 cut(s) 338, 544, 628
PscI ACATGT 1 cut(s) 525
Psp6I CCWGG 1 cut(s) 838
PspGI CCWGG 1 cut(s) 838
PspN4I GGNNCC 3 cut(s) 103, 231, 355
PspPI GGNCC 3 cut(s) 221, 230, 709
PstNI CAGNNNCTG 1 cut(s) 374
PsuI RGATCY 4 cut(s) 214, 643, 793, 874
RsaI GTAC 2 cut(s) 279, 291
RsaNI GTAC 2 cut(s) 278, 290
SaqAI TTAA 4 cut(s) 263, 480, 530, 863
SatI GCNGC 5 cut(s) 141, 375, 494, 762, 857
Sau3AI GATC 6 cut(s) 114, 214, 404, 643, 793, 874
Sau96I GGNCC 3 cut(s) 221, 230, 709
ScaI AGTACT 1 cut(s) 291
SchI GAGTC 3 cut(s) 338, 544, 628
ScrFI CCNGG 1 cut(s) 840
SduI GDGCHC 1 cut(s) 104
SetI ASST 7 cut(s) 286, 367, 540, 778, 817, 826, 841
SexAI ACCWGGT 1 cut(s) 838
SfaNI GCATC 1 cut(s) 588
SfcI CTRYAG 1 cut(s) 360
SfuI TTCGAA 1 cut(s) 680
SinI GGWCC 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 638
SmoI CTYRAG 1 cut(s) 638
SpeI ACTAGT 1 cut(s) 616
Sse9I AATT 4 cut(s) 348, 532, 561, 674
SseBI AGGCCT 2 cut(s) 7, 64
SsiI CCGC 4 cut(s) 105, 141, 153, 857
SspMI CTAG 1 cut(s) 617
StuI AGGCCT 2 cut(s) 7, 64
StyD4I CCNGG 1 cut(s) 838
StyI CCWWGG 3 cut(s) 65, 661, 756
TaaI ACNGT 1 cut(s) 268
TaqI TCGA 2 cut(s) 680, 849
TasI AATT 4 cut(s) 348, 532, 561, 674
TatI WGTACW 1 cut(s) 289
TauI GCSGC 2 cut(s) 143, 859
TfiI GAWTC 1 cut(s) 727
Tru1I TTAA 4 cut(s) 263, 480, 530, 863
Tru9I TTAA 4 cut(s) 263, 480, 530, 863
TseFI GTSAC 2 cut(s) 547, 655
TseI GCWGC 3 cut(s) 374, 493, 761
Tsp45I GTSAC 2 cut(s) 547, 655
TspDTI ATGAA 1 cut(s) 573
TspGWI ACGGA 1 cut(s) 712
VpaK11BI GGWCC 1 cut(s) 230
XapI RAATTY 1 cut(s) 674
XceI RCATGY 2 cut(s) 529, 577
XcmI CCANNNNNNNNNTGG 1 cut(s) 763
XmnI GAANNNNTTC 1 cut(s) 191
XspI CTAG 1 cut(s) 617
ZrmI AGTACT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.