MD16G1184000.v1.1

TVP38 TMEM64 family membrane protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
15814407 .. 15815152
746 bp
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UTR
Exon/CDS
Intron
MD16G1184000.v1.1.491

Sequence Viewer

Length: 372 bp
ATGTGTGGTAGTCATTTATTAATTGCAGTTAAACAGAGCATTTTGGATATTTCCCCAAAAGAAGATTATGGACCAAGTGAAATTGCTACTACCAGAAAGGGGCTAATAAGCAAAAACTTGGTTAAACATTGTACTACAATTGAAGTTTTGAAGTATTCTGTTATCTTTTTCTTTGGCTTGTTTGCAGTGATTTTAATGATTTGTGTTACAAGAGTTGCCAAGGCCGCTTTGGATAAAGCTTTGGCTGAAAATGAGGATATTGATAACATCGATATTATACCAGAGTTACCTGTTGTCTCCGAAGCACCAGTGCATCTCAACCAGCCGCTTTTAATCAAGATAGACGCGCCCGACGACCATCATGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

124

Amino Acids

13.57

Weight (kDa)

5.43

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010842)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 347
AciI CCGC 2 cut(s) 225, 326
AfaI GTAC 1 cut(s) 133
AfiI CCNNNNNNNGG 1 cut(s) 99
AgsI TTSAA 2 cut(s) 143, 151
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
Alw26I GTCTC 1 cut(s) 301
AoxI GGCC 1 cut(s) 222
AseI ATTAAT 1 cut(s) 20
AspLEI GCGC 1 cut(s) 349
AspS9I GGNCC 1 cut(s) 71
AvaII GGWCC 1 cut(s) 71
BccI CCATC 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 301
BisI GCNGC 2 cut(s) 225, 326
BlsI GCNGC 2 cut(s) 226, 327
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 71
BmsI GCATC 1 cut(s) 322
Bsa29I ATCGAT 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 219
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse1I ACTGG 1 cut(s) 308
BseCI ATCGAT 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 99
BseNI ACTGG 1 cut(s) 308
Bsh1236I CGCG 1 cut(s) 347
BshFI GGCC 1 cut(s) 224
BshVI ATCGAT 1 cut(s) 270
BslI CCNNNNNNNGG 1 cut(s) 99
BsmAI GTCTC 1 cut(s) 301
BsnI GGCC 1 cut(s) 224
BspACI CCGC 2 cut(s) 225, 326
BspANI GGCC 1 cut(s) 224
BspDI ATCGAT 1 cut(s) 270
BspFNI CGCG 1 cut(s) 347
BspHI TCATGA 1 cut(s) 361
BsrI ACTGG 1 cut(s) 308
BssECI CCNNGG 1 cut(s) 219
BssT1I CCWWGG 1 cut(s) 219
BstFNI CGCG 1 cut(s) 347
BstHHI GCGC 1 cut(s) 349
BstMAI GTCTC 1 cut(s) 301
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstUI CGCG 1 cut(s) 347
Bsu15I ATCGAT 1 cut(s) 270
BsuRI GGCC 1 cut(s) 224
BsuTUI ATCGAT 1 cut(s) 270
BtsI GCAGTG 1 cut(s) 192
BtsIMutI CAGTG 2 cut(s) 192, 315
CciI TCATGA 1 cut(s) 361
CfoI GCGC 1 cut(s) 349
Cfr13I GGNCC 1 cut(s) 71
ClaI ATCGAT 1 cut(s) 270
CseI GACGC 1 cut(s) 353
Csp6I GTAC 1 cut(s) 132
CviAII CATG 1 cut(s) 362
CviJI RGCY 6 cut(s) 103, 177, 224, 239, 245, 325
CviKI_1 RGCY 6 cut(s) 103, 177, 224, 239, 245, 325
CviQI GTAC 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 1 cut(s) 365
FaiI YATR 3 cut(s) 69, 278, 363
FatI CATG 1 cut(s) 361
Fnu4HI GCNGC 2 cut(s) 225, 326
Fsp4HI GCNGC 2 cut(s) 225, 326
GlaI GCGC 1 cut(s) 348
GluI GCNGC 2 cut(s) 225, 326
HaeIII GGCC 1 cut(s) 224
HgaI GACGC 1 cut(s) 353
HhaI GCGC 1 cut(s) 349
Hin1II CATG 1 cut(s) 365
Hin6I GCGC 1 cut(s) 347
HinP1I GCGC 1 cut(s) 347
HindIII AAGCTT 1 cut(s) 237
Hpy188I TCNGA 1 cut(s) 301
Hpy188III TCNNGA 2 cut(s) 337, 362
Hpy99I CGWCG 1 cut(s) 356
HpyCH4V TGCA 3 cut(s) 26, 185, 313
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
Hsp92II CATG 1 cut(s) 365
HspAI GCGC 1 cut(s) 347
LpnPI CCDG 5 cut(s) 106, 294, 303, 321, 335
LweI GCATC 1 cut(s) 322
MaeIII GTNAC 2 cut(s) 205, 285
MboII GAAGA 1 cut(s) 74
MfeI CAATTG 1 cut(s) 138
MluCI AATT 3 cut(s) 21, 81, 138
MnlI CCTC 1 cut(s) 247
MseI TTAA 5 cut(s) 20, 30, 123, 194, 332
MunI CAATTG 1 cut(s) 138
MvnI CGCG 1 cut(s) 347
MwoI GCNNNNNNNGC 1 cut(s) 224
NlaIII CATG 1 cut(s) 365
PagI TCATGA 1 cut(s) 361
PcsI WCGNNNNNNNCGW 1 cut(s) 351
PkrI GCNGC 2 cut(s) 226, 327
PshBI ATTAAT 1 cut(s) 20
PspPI GGNCC 1 cut(s) 71
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
SaqAI TTAA 5 cut(s) 20, 30, 123, 194, 332
SatI GCNGC 2 cut(s) 225, 326
Sau96I GGNCC 1 cut(s) 71
SetI ASST 2 cut(s) 241, 292
SfaNI GCATC 1 cut(s) 322
SinI GGWCC 1 cut(s) 71
Sse9I AATT 3 cut(s) 21, 81, 138
SsiI CCGC 2 cut(s) 225, 326
StyI CCWWGG 1 cut(s) 219
TaqI TCGA 1 cut(s) 270
TasI AATT 3 cut(s) 21, 81, 138
TatI WGTACW 1 cut(s) 131
TauI GCSGC 2 cut(s) 227, 328
Tru1I TTAA 5 cut(s) 20, 30, 123, 194, 332
Tru9I TTAA 5 cut(s) 20, 30, 123, 194, 332
TscAI CASTG 2 cut(s) 192, 315
TspRI CASTG 2 cut(s) 192, 315
VpaK11BI GGWCC 1 cut(s) 71
VspI ATTAAT 1 cut(s) 20
XcmI CCANNNNNNNNNTGG 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.