Prupe.1G151400_v2.0.a1

TVP38 TMEM64 family membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010842
Physical Location & Seq
Forward (+)
11948439 .. 11953762
5324 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G151400.2

Sequence Viewer

Length: 837 bp
ATGGCTTTCACTTGGGGTTCTGCGCTCAGGATCACACTCCTCCTCCTCCTTGTGGCCGCTGTAGCCACTGCTTGTTTTACTCTCCCTGTTGAAAAGATTTTGAAGGACTTCTTATTATGGGTTGAGCAGGATCTTGGTCCTTGGGGTCCGCTTGTTCTGGCTGTTGCATACATTCCACTAACAGTCTTGGCAGTACCAGCTTCAGTACTTACCCTTGGTGGTGGTTATCTTTTTGGCCTACCTGTGGGCTTTGTTGCCGACTCAATTGGAGCCACTGTAGGTGCAGGGGCCGCCTTCCTTCTTGGCAGAACTATTGGGAGATCATTTGTTGTTTCCAGGTTGAAGGATTATCCTCAGTTCCGTGCAGTTGCAATTGCAATTCGGAGATCTGGATTTAAGATTGTTTTGTTGCTTCGTCTTGTTCCCTTACTCCCTTTCAACATGTTAAATTACCTCTTGTCTGTGACTCCTGTTCCAATAGGACAATACATGCTAGCTTCCTGGTTAGGAATGATGCCAATAACATTTGCGCTAGTATATGTTGGAACAACTCTCAAGGATCTTTCTGATGTGACCCATGGATGGGGTGAATTTTCAAAGACCCGTTGGGCTTTTATCGTATTGGGCCTCGCAGTATCTGGTAAGTTGCAAAATCTCAACAAGCACACACAAGCCTTTTCTTTGGGCCACCTTCTCTTCTTTTCCTTCTTAGTGGGGTGGGAGCATGGGAATTACTATGTTAGACAAAGATGTTTGAGTTCTTACTATCATAACATGATCTCGTTTTTCCAGCTTAAGATACAAATAATGTTATTGAAACAAGGAAGAACGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

279

Amino Acids

30.72

Weight (kDa)

9.97

Isoelectric Point (pI)

32.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010842)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19070 AT5G19070
fragaria_vesca FvH4_4g14490 FvH4_4g14490 FvH4_4g14490 FvH4_4g14490
malus_domestica MD13G1183100.v1.1 MD16G1184000.v1.1
prunus_persica Prupe.1G151400_v2.0.a1
pyrus_communis pycom13g15830 pycom16g15450
rosa_chinensis RchiOBHm_Chr4g0418341
rosa_laevigata RLG00000007873 RLG00000007874
rosa_multiflora Rmu_sc0009909.1_g000002
rosa_roxburghii Rroxscaffold_5G00361530
rosa_rugosa Rorug04G0152300
rosa_samantha Rh4AG213900 Rh4BG216500
rosa_wichuraiana Rw4G018170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 57, 149, 291
AclWI GGATC 3 cut(s) 38, 138, 567
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 1 cut(s) 590
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 2 cut(s) 195, 207
AfiI CCNNNNNNNGG 4 cut(s) 52, 244, 582, 583
AflII CTTAAG 1 cut(s) 794
AflIII ACRYGT 1 cut(s) 441
AgsI TTSAA 6 cut(s) 92, 103, 343, 439, 597, 817
AjnI CCWGG 2 cut(s) 335, 500
AluBI AGCT 3 cut(s) 200, 497, 793
AluI AGCT 3 cut(s) 200, 497, 793
AlwI GGATC 3 cut(s) 38, 138, 567
AlwNI CAGNNNCTG 1 cut(s) 638
AoxI GGCC 5 cut(s) 54, 235, 288, 625, 685
ApoI RAATTY 1 cut(s) 590
Asp700I GAANNNNTTC 1 cut(s) 107
AspLEI GCGC 2 cut(s) 25, 532
AspS9I GGNCC 5 cut(s) 137, 146, 288, 625, 685
AsuHPI GGTGA 1 cut(s) 599
AsuNHI GCTAGC 1 cut(s) 493
AvaII GGWCC 2 cut(s) 137, 146
BccI CCATC 1 cut(s) 576
BciT130I CCWGG 2 cut(s) 337, 502
BfaI CTAG 2 cut(s) 494, 533
BfmI CTRYAG 2 cut(s) 60, 276
BfrI CTTAAG 1 cut(s) 794
BglII AGATCT 1 cut(s) 386
BisI GCNGC 2 cut(s) 57, 291
BlsI GCNGC 2 cut(s) 58, 292
BmcAI AGTACT 1 cut(s) 207
Bme1390I CCNGG 2 cut(s) 337, 502
Bme18I GGWCC 2 cut(s) 137, 146
BmgT120I GGNCC 5 cut(s) 137, 146, 288, 625, 685
BmiI GGNNCC 3 cut(s) 147, 271, 289
BmrFI CCNGG 2 cut(s) 337, 502
BmsI GCATC 1 cut(s) 504
BmtI GCTAGC 1 cut(s) 497
Bpu10I CCTNAGC 1 cut(s) 26
BpuEI CTTGAG 1 cut(s) 539
BsaJI CCNNGG 3 cut(s) 140, 214, 577
BsaXI ACNNNNNCTCC 4 cut(s) 27, 57, 261, 291
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 244, 582, 583
BseBI CCWGG 2 cut(s) 337, 502
BseDI CCNNGG 3 cut(s) 140, 214, 577
BseGI GGATG 1 cut(s) 587
BseLI CCNNNNNNNGG 4 cut(s) 52, 244, 582, 583
BseMII CTCAG 2 cut(s) 40, 368
BseRI GAGGAG 3 cut(s) 29, 32, 35
BsgI GTGCAG 2 cut(s) 303, 384
BshFI GGCC 5 cut(s) 56, 237, 290, 627, 687
BslI CCNNNNNNNGG 4 cut(s) 52, 244, 582, 583
BsnI GGCC 5 cut(s) 56, 237, 290, 627, 687
Bsp143I GATC 6 cut(s) 30, 130, 320, 386, 559, 777
Bsp19I CCATGG 1 cut(s) 577
BspACI CCGC 3 cut(s) 57, 149, 291
BspANI GGCC 5 cut(s) 56, 237, 290, 627, 687
BspCNI CTCAG 2 cut(s) 39, 367
BspLI GGNNCC 3 cut(s) 147, 271, 289
BspOI GCTAGC 1 cut(s) 497
BspPI GGATC 3 cut(s) 38, 138, 567
BspTI CTTAAG 1 cut(s) 794
BssECI CCNNGG 3 cut(s) 140, 214, 577
BssMI GATC 6 cut(s) 30, 130, 320, 386, 559, 777
BssT1I CCWWGG 3 cut(s) 140, 214, 577
Bst2UI CCWGG 2 cut(s) 337, 502
Bst4CI ACNGT 2 cut(s) 184, 277
Bst6I CTCTTC 1 cut(s) 701
BstAFI CTTAAG 1 cut(s) 794
BstC8I GCNNGC 1 cut(s) 495
BstDEI CTNAG 3 cut(s) 26, 354, 709
BstDSI CCRYGG 1 cut(s) 577
BstF5I GGATG 1 cut(s) 587
BstHHI GCGC 2 cut(s) 25, 532
BstKTI GATC 6 cut(s) 33, 133, 323, 389, 562, 780
BstMBI GATC 6 cut(s) 30, 130, 320, 386, 559, 777
BstMWI GCNNNNNNNGC 3 cut(s) 62, 197, 290
BstNI CCWGG 2 cut(s) 337, 502
BstNSI RCATGY 2 cut(s) 445, 493
BstSCI CCNGG 2 cut(s) 335, 500
BstSFI CTRYAG 2 cut(s) 60, 276
BstX2I RGATCY 3 cut(s) 130, 386, 559
BstYI RGATCY 3 cut(s) 130, 386, 559
BsuRI GGCC 5 cut(s) 56, 237, 290, 627, 687
BtgI CCRYGG 1 cut(s) 577
BtsCI GGATG 1 cut(s) 587
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 2 cut(s) 66, 273
Cac8I GCNNGC 1 cut(s) 495
CaiI CAGNNNCTG 1 cut(s) 638
CfoI GCGC 2 cut(s) 25, 532
Cfr13I GGNCC 5 cut(s) 137, 146, 288, 625, 685
Csp6I GTAC 2 cut(s) 194, 206
CviAII CATG 5 cut(s) 442, 490, 578, 725, 775
CviQI GTAC 2 cut(s) 194, 206
DdeI CTNAG 3 cut(s) 26, 354, 709
DpnI GATC 6 cut(s) 32, 132, 322, 388, 561, 779
DpnII GATC 6 cut(s) 30, 130, 320, 386, 559, 777
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 701
EarI CTCTTC 1 cut(s) 701
Eco130I CCWWGG 3 cut(s) 140, 214, 577
Eco47I GGWCC 2 cut(s) 137, 146
Eco57I CTGAAG 1 cut(s) 186
EcoRII CCWGG 2 cut(s) 335, 500
EcoT14I CCWWGG 3 cut(s) 140, 214, 577
ErhI CCWWGG 3 cut(s) 140, 214, 577
FaeI CATG 5 cut(s) 445, 493, 581, 728, 778
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FatI CATG 5 cut(s) 441, 489, 577, 724, 774
Fnu4HI GCNGC 2 cut(s) 57, 291
FokI GGATG 1 cut(s) 594
Fsp4HI GCNGC 2 cut(s) 57, 291
FspBI CTAG 2 cut(s) 494, 533
GlaI GCGC 2 cut(s) 24, 531
GluI GCNGC 2 cut(s) 57, 291
HaeIII GGCC 5 cut(s) 56, 237, 290, 627, 687
HhaI GCGC 2 cut(s) 25, 532
Hin1II CATG 5 cut(s) 445, 493, 581, 728, 778
Hin6I GCGC 2 cut(s) 23, 530
HinP1I GCGC 2 cut(s) 23, 530
HinfI GANTC 2 cut(s) 260, 466
HphI GGTGA 1 cut(s) 599
Hpy188I TCNGA 2 cut(s) 384, 568
Hpy188III TCNNGA 2 cut(s) 28, 390
HpyAV CCTTC 6 cut(s) 97, 304, 308, 337, 701, 715
HpyCH4III ACNGT 2 cut(s) 184, 277
HpyCH4V TGCA 6 cut(s) 167, 284, 365, 371, 377, 649
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 197, 290
HpyF3I CTNAG 3 cut(s) 26, 354, 709
Hsp92II CATG 5 cut(s) 445, 493, 581, 728, 778
HspAI GCGC 2 cut(s) 23, 530
Kzo9I GATC 6 cut(s) 30, 130, 320, 386, 559, 777
LmnI GCTCC 2 cut(s) 269, 721
LweI GCATC 1 cut(s) 504
MaeI CTAG 2 cut(s) 494, 533
MaeIII GTNAC 2 cut(s) 463, 571
MalI GATC 6 cut(s) 32, 132, 322, 388, 561, 779
MboI GATC 6 cut(s) 30, 130, 320, 386, 559, 777
MboII GAAGA 2 cut(s) 688, 837
MfeI CAATTG 2 cut(s) 264, 372
MflI RGATCY 3 cut(s) 130, 386, 559
MluCI AATT 6 cut(s) 264, 372, 378, 448, 590, 730
MlyI GAGTC 2 cut(s) 254, 460
MmeI TCCRAC 1 cut(s) 523
MnlI CCTC 6 cut(s) 50, 53, 56, 363, 464, 638
MroXI GAANNNNTTC 1 cut(s) 107
MseI TTAA 3 cut(s) 396, 446, 795
MspA1I CMGCKG 1 cut(s) 59
MspCI CTTAAG 1 cut(s) 794
MspR9I CCNGG 2 cut(s) 337, 502
MunI CAATTG 2 cut(s) 264, 372
MvaI CCWGG 2 cut(s) 337, 502
MwoI GCNNNNNNNGC 3 cut(s) 62, 197, 290
NcoI CCATGG 1 cut(s) 577
NdeII GATC 6 cut(s) 30, 130, 320, 386, 559, 777
NheI GCTAGC 1 cut(s) 493
NlaIII CATG 5 cut(s) 445, 493, 581, 728, 778
NlaIV GGNNCC 3 cut(s) 147, 271, 289
NmuCI GTSAC 2 cut(s) 463, 571
NspI RCATGY 2 cut(s) 445, 493
PciI ACATGT 1 cut(s) 441
PdmI GAANNNNTTC 1 cut(s) 107
PkrI GCNGC 2 cut(s) 58, 292
PleI GAGTC 2 cut(s) 254, 460
PpsI GAGTC 2 cut(s) 254, 460
PscI ACATGT 1 cut(s) 441
Psp6I CCWGG 2 cut(s) 335, 500
PspGI CCWGG 2 cut(s) 335, 500
PspN4I GGNNCC 3 cut(s) 147, 271, 289
PspPI GGNCC 5 cut(s) 137, 146, 288, 625, 685
PstNI CAGNNNCTG 1 cut(s) 638
PsuI RGATCY 3 cut(s) 130, 386, 559
RsaI GTAC 2 cut(s) 195, 207
RsaNI GTAC 2 cut(s) 194, 206
SaqAI TTAA 3 cut(s) 396, 446, 795
SatI GCNGC 2 cut(s) 57, 291
Sau3AI GATC 6 cut(s) 30, 130, 320, 386, 559, 777
Sau96I GGNCC 5 cut(s) 137, 146, 288, 625, 685
ScaI AGTACT 1 cut(s) 207
SchI GAGTC 2 cut(s) 254, 460
ScrFI CCNGG 2 cut(s) 337, 502
SetI ASST 8 cut(s) 202, 244, 283, 341, 456, 499, 693, 795
SfaNI GCATC 1 cut(s) 504
SfcI CTRYAG 2 cut(s) 60, 276
SinI GGWCC 2 cut(s) 137, 146
SmlI CTYRAG 2 cut(s) 554, 794
SmoI CTYRAG 2 cut(s) 554, 794
Sse9I AATT 6 cut(s) 264, 372, 378, 448, 590, 730
SsiI CCGC 3 cut(s) 57, 149, 291
SspMI CTAG 2 cut(s) 494, 533
StyD4I CCNGG 2 cut(s) 335, 500
StyI CCWWGG 3 cut(s) 140, 214, 577
TaaI ACNGT 2 cut(s) 184, 277
TasI AATT 6 cut(s) 264, 372, 378, 448, 590, 730
TatI WGTACW 1 cut(s) 205
TauI GCSGC 2 cut(s) 59, 293
Tru1I TTAA 3 cut(s) 396, 446, 795
Tru9I TTAA 3 cut(s) 396, 446, 795
TscAI CASTG 2 cut(s) 73, 280
TseFI GTSAC 2 cut(s) 463, 571
Tsp45I GTSAC 2 cut(s) 463, 571
TspGWI ACGGA 1 cut(s) 350
TspRI CASTG 2 cut(s) 73, 280
Vha464I CTTAAG 1 cut(s) 794
VpaK11BI GGWCC 2 cut(s) 137, 146
XapI RAATTY 1 cut(s) 590
XceI RCATGY 2 cut(s) 445, 493
XmnI GAANNNNTTC 1 cut(s) 107
XspI CTAG 2 cut(s) 494, 533
ZrmI AGTACT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.