AT5G19120

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017142
Physical Location & Seq
Forward (+)
6414488 .. 6415907
1420 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G19120.1

Sequence Viewer

Length: 1161 bp
ATGGCTTCTTCTTCTTGTTTGAATCTCTTCTTCTTCTCTTTTCTCTCCGCTCTAATCATTTCTAAATCTCAGATCTCTGATTCCGTTAACGGGGTCGTTTTCCCTGTTGTTAAAGACCTTCCAACCGGTCAATACCTCGCACAGATTCGACTCGGTGACTCACCGGATCCAGTCAAGCTCGTAGTCGATCTGGCCGGCTCAATTCTCTGGTTTGATTGTTCCTCAAGACATGTTTCCTCGTCAAGGAACCTAATATCCGGTAGCTCTAGCGGCTGCTTAAAGGCAAAAGTTGGAAATGAACGAGTATCATCATCATCATCATCGCGTAAAGACCAAAACGCCGATTGCGAATTACTTGTTAAAAACGACGCCTTTGGGATTACGGCGAGAGGAGAGCTTTTCAGTGACGTCATGTCGGTTGGCTCTGTTACTTCTCCGGGAACCGTTGATCTACTTTTCGCTTGTACTCCACCGTGGCTGTTACGTGGGCTCGCTAGTGGAGCCCAAGGAGTAATGGGCTTAGGAAGGGCCCAAATCTCACTCCCTTCACAACTCGCCGCGGAAACTAACGAACGTCGTCGGTTAACTGTTTACCTGTCGCCGTTGAACGGTGTCGTATCAACGAGTTCGGTGGAGGAGGTTTTTGGAGTGGCTGCGTCTAGATCGCTGGTTTACACGCCTTTGTTAACCGGTTCGAGTGGCAACTACGTAATTAACGTGAAATCGATTAGAGTCAACGGGGAAAAGCTCTCCGTGGAAGGTCCGTTGGCGGTGGAGCTGAGCACGGTGGTTCCTTACACGATTTTAGAGAGCTCGATCTACAAGGTGTTCGCGGAAGCTTACGCCAAAGCTGCGGGTGAAGCTACATCGGTGCCTCCTGTCGCACCGTTTGGGCTCTGCTTCACTAGTGACGTAGATTTTCCGGCGGTAGATCTAGCGTTGCAGAGTGAGATGGTGCGGTGGAGGATTCATGGGAAGAATCTGATGGTGGATGTTGGTGGTGGAGTCCGATGCTCGGGGATTGTTGACGGCGGGTCAAGTCGAGTCAACCCGATTGTAATGGGTGGGCTACAATTAGAAGGCTTTATATTGGACTTTGATTTGGGTAACTCAATGATGGGCTTTGGACAAAGAACACGCTCTGATTCAACTTCGTTGTAA

Protein Analysis

386

Amino Acids

40.7

Weight (kDa)

5.58

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 44 - 377 3e-06 Eukaryotic aspartyl protease
TAXi_N PF14543 45 - 200 5.4e-26 Xylanase inhibitor N-terminal
TAXi_C PF14541 235 - 376 7.7e-35 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19120
fragaria_vesca FvH4_4g14600
malus_domestica MD16G1185400.v1.1
prunus_persica Prupe.1G152000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0418211
rosa_laevigata RLG00000007885
rosa_roxburghii Rroxscaffold_5G00361420
rosa_rugosa Rorug04G0151200
rosa_samantha Rh4AG212900 Rh4BG217800 Rh4CG224600 Rh4DG211400
rosa_wichuraiana Rw4G018080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 411
AccB1I GGYRCC 1 cut(s) 871
AccBSI CCGCTC 1 cut(s) 50
AccII CGCG 3 cut(s) 325, 560, 833
AclWI GGATC 2 cut(s) 161, 174
AcoI YGGCCR 1 cut(s) 192
AcyI GRCGYC 2 cut(s) 369, 408
AfaI GTAC 1 cut(s) 466
AfiI CCNNNNNNNGG 4 cut(s) 90, 243, 608, 1015
AflIII ACRYGT 1 cut(s) 229
AgeI ACCGGT 2 cut(s) 125, 689
AgsI TTSAA 3 cut(s) 22, 607, 1149
AhdI GACNNNNNGTC 2 cut(s) 412, 1033
AhlI ACTAGT 1 cut(s) 905
AloI GAACNNNNNNTCC 2 cut(s) 239, 271
AluBI AGCT 9 cut(s) 178, 264, 397, 748, 778, 813, 839, 851, 863
AluI AGCT 9 cut(s) 178, 264, 397, 748, 778, 813, 839, 851, 863
Alw21I GWGCWC 2 cut(s) 785, 815
AlwI GGATC 2 cut(s) 161, 174
Ama87I CYCGRG 1 cut(s) 1015
AoxI GGCC 2 cut(s) 192, 528
ApaI GGGCCC 1 cut(s) 532
ApeKI GCWGC 3 cut(s) 273, 653, 851
AsiGI ACCGGT 2 cut(s) 125, 689
Asp700I GAANNNNTTC 1 cut(s) 26
AspS9I GGNCC 3 cut(s) 528, 529, 761
AsuC2I CCSGG 1 cut(s) 438
AsuHPI GGTGA 3 cut(s) 153, 167, 869
AvaI CYCGRG 1 cut(s) 1015
AvaII GGWCC 1 cut(s) 761
BaeGI GKGCMC 1 cut(s) 532
BamHI GGATCC 1 cut(s) 166
BanI GGYRCC 1 cut(s) 871
BanII GRGCYC 5 cut(s) 492, 505, 532, 815, 897
Bbv12I GWGCWC 2 cut(s) 785, 815
BbvI GCAGC 3 cut(s) 260, 640, 838
BccI CCATC 3 cut(s) 946, 979, 1111
BceAI ACGGC 3 cut(s) 399, 586, 1045
BcnI CCSGG 1 cut(s) 438
BcuI ACTAGT 1 cut(s) 905
BfaI CTAG 5 cut(s) 267, 495, 660, 906, 935
BglII AGATCT 2 cut(s) 72, 931
BisI GCNGC 5 cut(s) 271, 274, 558, 654, 852
BlpI GCTNAGC 1 cut(s) 779
BlsI GCNGC 5 cut(s) 272, 275, 559, 655, 853
Bme1390I CCNGG 1 cut(s) 438
Bme18I GGWCC 1 cut(s) 761
BmeRI GACNNNNNGTC 2 cut(s) 412, 1033
BmeT110I CYCGRG 1 cut(s) 1015
BmgT120I GGNCC 3 cut(s) 528, 529, 761
BmiI GGNNCC 7 cut(s) 168, 248, 442, 502, 530, 792, 873
BmrFI CCNGG 1 cut(s) 438
BmsI GCATC 1 cut(s) 1001
Bpu10I CCTNAGC 1 cut(s) 520
Bpu1102I GCTNAGC 1 cut(s) 779
BpuEI CTTGAG 1 cut(s) 208
BpuMI CCSGG 1 cut(s) 438
Bsa29I ATCGAT 1 cut(s) 725
BsaAI YACGTR 2 cut(s) 485, 709
BsaHI GRCGYC 2 cut(s) 369, 408
BsaJI CCNNGG 4 cut(s) 473, 505, 558, 753
BsaWI WCCGGW 4 cut(s) 125, 163, 257, 689
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 243, 608, 1015
Bse118I RCCGGY 3 cut(s) 125, 194, 689
Bse1I ACTGG 1 cut(s) 170
BseCI ATCGAT 1 cut(s) 725
BseDI CCNNGG 4 cut(s) 473, 505, 558, 753
BseGI GGATG 1 cut(s) 997
BseLI CCNNNNNNNGG 4 cut(s) 90, 243, 608, 1015
BseMII CTCAG 2 cut(s) 83, 770
BseNI ACTGG 1 cut(s) 170
BseRI GAGGAG 2 cut(s) 405, 650
BseSI GKGCMC 1 cut(s) 532
BseXI GCAGC 3 cut(s) 260, 640, 838
Bsh1236I CGCG 3 cut(s) 325, 560, 833
BshFI GGCC 2 cut(s) 194, 530
BshNI GGYRCC 1 cut(s) 871
BshTI ACCGGT 2 cut(s) 125, 689
BshVI ATCGAT 1 cut(s) 725
BsiHKAI GWGCWC 2 cut(s) 785, 815
BsiHKCI CYCGRG 1 cut(s) 1015
BsiSI CCGG 7 cut(s) 126, 164, 195, 258, 437, 690, 923
BslI CCNNNNNNNGG 4 cut(s) 90, 243, 608, 1015
BsnI GGCC 2 cut(s) 194, 530
BsoBI CYCGRG 1 cut(s) 1015
Bsp120I GGGCCC 1 cut(s) 528
Bsp1286I GDGCHC 6 cut(s) 492, 505, 532, 785, 815, 897
Bsp143I GATC 7 cut(s) 72, 166, 187, 448, 662, 816, 931
Bsp1720I GCTNAGC 1 cut(s) 779
BspANI GGCC 2 cut(s) 194, 530
BspCNI CTCAG 2 cut(s) 82, 771
BspDI ATCGAT 1 cut(s) 725
BspFNI CGCG 3 cut(s) 325, 560, 833
BspLI GGNNCC 7 cut(s) 168, 248, 442, 502, 530, 792, 873
BspPI GGATC 2 cut(s) 161, 174
BspT107I GGYRCC 1 cut(s) 871
BsrBI CCGCTC 1 cut(s) 50
BsrFI RCCGGY 3 cut(s) 125, 194, 689
BsrI ACTGG 1 cut(s) 170
BssAI RCCGGY 3 cut(s) 125, 194, 689
BssECI CCNNGG 4 cut(s) 473, 505, 558, 753
BssMI GATC 7 cut(s) 72, 166, 187, 448, 662, 816, 931
BssNI GRCGYC 2 cut(s) 369, 408
BssT1I CCWWGG 1 cut(s) 505
Bst4CI ACNGT 6 cut(s) 445, 474, 589, 611, 787, 888
Bst6I CTCTTC 1 cut(s) 32
BstACI GRCGYC 2 cut(s) 369, 408
BstBAI YACGTR 2 cut(s) 485, 709
BstC8I GCNNGC 2 cut(s) 196, 492
BstDEI CTNAG 3 cut(s) 69, 520, 779
BstDSI CCRYGG 3 cut(s) 473, 558, 753
BstENI CCTNNNNNAGG 1 cut(s) 241
BstF5I GGATG 1 cut(s) 997
BstFNI CGCG 3 cut(s) 325, 560, 833
BstKTI GATC 7 cut(s) 75, 169, 190, 451, 665, 819, 934
BstMBI GATC 7 cut(s) 72, 166, 187, 448, 662, 816, 931
BstMWI GCNNNNNNNGC 4 cut(s) 270, 500, 851, 860
BstNSI RCATGY 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 436
BstSLI GKGCMC 1 cut(s) 532
BstSNI TACGTA 1 cut(s) 709
BstUI CGCG 3 cut(s) 325, 560, 833
BstV1I GCAGC 3 cut(s) 260, 640, 838
BstX2I RGATCY 3 cut(s) 72, 166, 931
BstYI RGATCY 3 cut(s) 72, 166, 931
Bsu15I ATCGAT 1 cut(s) 725
BsuRI GGCC 2 cut(s) 194, 530
BsuTUI ATCGAT 1 cut(s) 725
BtgI CCRYGG 3 cut(s) 473, 558, 753
BtgZI GCGATG 1 cut(s) 306
BtsCI GGATG 1 cut(s) 997
BtsIMutI CAGTG 1 cut(s) 409
Cac8I GCNNGC 2 cut(s) 196, 492
Cfr10I RCCGGY 3 cut(s) 125, 194, 689
Cfr13I GGNCC 3 cut(s) 528, 529, 761
Cfr42I CCGCGG 1 cut(s) 561
ClaI ATCGAT 1 cut(s) 725
CseI GACGC 2 cut(s) 377, 645
Csp6I GTAC 1 cut(s) 465
CspAI ACCGGT 2 cut(s) 125, 689
CviAII CATG 3 cut(s) 230, 412, 971
CviQI GTAC 1 cut(s) 465
DdeI CTNAG 3 cut(s) 69, 520, 779
DpnI GATC 7 cut(s) 74, 168, 189, 450, 664, 818, 933
DpnII GATC 7 cut(s) 72, 166, 187, 448, 662, 816, 931
DriI GACNNNNNGTC 2 cut(s) 412, 1033
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 1 cut(s) 32
Eam1105I GACNNNNNGTC 2 cut(s) 412, 1033
EarI CTCTTC 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 813
Eco105I TACGTA 1 cut(s) 709
Eco130I CCWWGG 1 cut(s) 505
Eco24I GRGCYC 5 cut(s) 492, 505, 532, 815, 897
Eco47I GGWCC 1 cut(s) 761
Eco53kI GAGCTC 1 cut(s) 813
Eco88I CYCGRG 1 cut(s) 1015
EcoICRI GAGCTC 1 cut(s) 813
EcoNI CCTNNNNNAGG 1 cut(s) 241
EcoO109I RGGNCCY 1 cut(s) 528
EcoT14I CCWWGG 1 cut(s) 505
EcoT38I GRGCYC 5 cut(s) 492, 505, 532, 815, 897
ErhI CCWWGG 1 cut(s) 505
FaeI CATG 3 cut(s) 233, 415, 974
FaiI YATR 4 cut(s) 231, 413, 972, 1088
FatI CATG 3 cut(s) 229, 411, 970
FauI CCCGC 2 cut(s) 847, 1025
Fnu4HI GCNGC 5 cut(s) 271, 274, 558, 654, 852
FokI GGATG 1 cut(s) 1004
FriOI GRGCYC 5 cut(s) 492, 505, 532, 815, 897
Fsp4HI GCNGC 5 cut(s) 271, 274, 558, 654, 852
FspBI CTAG 5 cut(s) 267, 495, 660, 906, 935
GluI GCNGC 5 cut(s) 271, 274, 558, 654, 852
HaeIII GGCC 2 cut(s) 194, 530
HapII CCGG 7 cut(s) 126, 164, 195, 258, 437, 690, 923
HgaI GACGC 2 cut(s) 377, 645
Hin1I GRCGYC 2 cut(s) 369, 408
Hin1II CATG 3 cut(s) 233, 415, 974
HincII GTYRAC 6 cut(s) 88, 585, 687, 736, 1027, 1048
HindII GTYRAC 6 cut(s) 88, 585, 687, 736, 1027, 1048
HindIII AAGCTT 1 cut(s) 837
HpaI GTTAAC 3 cut(s) 88, 585, 687
HpaII CCGG 7 cut(s) 126, 164, 195, 258, 437, 690, 923
HphI GGTGA 3 cut(s) 153, 167, 869
Hpy166II GTNNAC 8 cut(s) 88, 585, 592, 673, 687, 736, 1027, 1048
Hpy188I TCNGA 5 cut(s) 72, 79, 984, 1010, 1144
Hpy188III TCNNGA 2 cut(s) 225, 660
Hpy8I GTNNAC 8 cut(s) 88, 585, 592, 673, 687, 736, 1027, 1048
Hpy99I CGWCG 3 cut(s) 371, 579, 582
HpyAV CCTTC 5 cut(s) 128, 519, 555, 752, 1073
HpyCH4III ACNGT 6 cut(s) 445, 474, 589, 611, 787, 888
HpyCH4IV ACGT 6 cut(s) 408, 484, 574, 708, 717, 912
HpyCH4V TGCA 1 cut(s) 943
HpyF10VI GCNNNNNNNGC 4 cut(s) 270, 500, 851, 860
HpyF3I CTNAG 3 cut(s) 69, 520, 779
HpySE526I ACGT 6 cut(s) 408, 484, 574, 708, 717, 912
Hsp92I GRCGYC 2 cut(s) 369, 408
Hsp92II CATG 3 cut(s) 233, 415, 974
KroI GCCGGC 1 cut(s) 194
KroNI GCCGGC 1 cut(s) 196
KspAI GTTAAC 3 cut(s) 88, 585, 687
KspI CCGCGG 1 cut(s) 561
Kzo9I GATC 7 cut(s) 72, 166, 187, 448, 662, 816, 931
LmnI GCTCC 2 cut(s) 500, 775
Lsp1109I GCAGC 3 cut(s) 260, 640, 838
LweI GCATC 1 cut(s) 1001
MaeI CTAG 5 cut(s) 267, 495, 660, 906, 935
MaeII ACGT 6 cut(s) 408, 484, 574, 708, 717, 912
MaeIII GTNAC 6 cut(s) 155, 404, 427, 480, 908, 1106
MalI GATC 7 cut(s) 74, 168, 189, 450, 664, 818, 933
MbiI CCGCTC 1 cut(s) 50
MboI GATC 7 cut(s) 72, 166, 187, 448, 662, 816, 931
MboII GAAGA 5 cut(s) 3, 19, 22, 25, 988
MflI RGATCY 3 cut(s) 72, 166, 931
MhlI GDGCHC 6 cut(s) 492, 505, 532, 785, 815, 897
MluCI AATT 4 cut(s) 201, 350, 711, 1073
MlyI GAGTC 5 cut(s) 144, 152, 741, 1014, 1053
MmeI TCCRAC 2 cut(s) 146, 271
MnlI CCTC 8 cut(s) 146, 232, 247, 383, 628, 631, 885, 957
MroNI GCCGGC 1 cut(s) 194
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 7 cut(s) 87, 111, 278, 360, 584, 686, 714
MspA1I CMGCKG 1 cut(s) 560
MspI CCGG 7 cut(s) 126, 164, 195, 258, 437, 690, 923
MspR9I CCNGG 1 cut(s) 438
MvnI CGCG 3 cut(s) 325, 560, 833
MwoI GCNNNNNNNGC 4 cut(s) 270, 500, 851, 860
NaeI GCCGGC 1 cut(s) 196
NciI CCSGG 1 cut(s) 438
NdeII GATC 7 cut(s) 72, 166, 187, 448, 662, 816, 931
NgoMIV GCCGGC 1 cut(s) 194
NlaIII CATG 3 cut(s) 233, 415, 974
NlaIV GGNNCC 7 cut(s) 168, 248, 442, 502, 530, 792, 873
NmuCI GTSAC 3 cut(s) 155, 404, 908
NspI RCATGY 1 cut(s) 233
PciI ACATGT 1 cut(s) 229
PcsI WCGNNNNNNNCGW 2 cut(s) 345, 714
PdiI GCCGGC 1 cut(s) 196
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 6 cut(s) 22, 80, 145, 967, 979, 1145
PfoI TCCNGGA 1 cut(s) 436
PinAI ACCGGT 2 cut(s) 125, 689
PkrI GCNGC 5 cut(s) 272, 275, 559, 655, 853
PleI GAGTC 5 cut(s) 144, 152, 740, 1013, 1052
PpsI GAGTC 5 cut(s) 144, 152, 740, 1013, 1052
Ppu21I YACGTR 2 cut(s) 485, 709
PscI ACATGT 1 cut(s) 229
Psp124BI GAGCTC 1 cut(s) 815
PspN4I GGNNCC 7 cut(s) 168, 248, 442, 502, 530, 792, 873
PspOMI GGGCCC 1 cut(s) 528
PspPI GGNCC 3 cut(s) 528, 529, 761
PsuI RGATCY 3 cut(s) 72, 166, 931
RsaI GTAC 1 cut(s) 466
RsaNI GTAC 1 cut(s) 465
SacI GAGCTC 1 cut(s) 815
SacII CCGCGG 1 cut(s) 561
SaqAI TTAA 7 cut(s) 87, 111, 278, 360, 584, 686, 714
SatI GCNGC 5 cut(s) 271, 274, 558, 654, 852
Sau3AI GATC 7 cut(s) 72, 166, 187, 448, 662, 816, 931
Sau96I GGNCC 3 cut(s) 528, 529, 761
SchI GAGTC 5 cut(s) 144, 152, 741, 1014, 1053
ScrFI CCNGG 1 cut(s) 438
SduI GDGCHC 6 cut(s) 492, 505, 532, 785, 815, 897
SfaNI GCATC 1 cut(s) 1001
Sfr303I CCGCGG 1 cut(s) 561
SgrBI CCGCGG 1 cut(s) 561
SinI GGWCC 1 cut(s) 761
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
SnaBI TACGTA 1 cut(s) 709
SpeI ACTAGT 1 cut(s) 905
Sse9I AATT 4 cut(s) 201, 350, 711, 1073
SspMI CTAG 5 cut(s) 267, 495, 660, 906, 935
SstI GAGCTC 1 cut(s) 815
StyD4I CCNGG 1 cut(s) 436
StyI CCWWGG 1 cut(s) 505
TaaI ACNGT 6 cut(s) 445, 474, 589, 611, 787, 888
TaiI ACGT 6 cut(s) 411, 487, 577, 711, 720, 915
TaqI TCGA 6 cut(s) 148, 186, 695, 725, 815, 1042
TasI AATT 4 cut(s) 201, 350, 711, 1073
TatI WGTACW 1 cut(s) 464
TauI GCSGC 2 cut(s) 273, 560
TfiI GAWTC 6 cut(s) 22, 80, 145, 967, 979, 1145
Tru1I TTAA 7 cut(s) 87, 111, 278, 360, 584, 686, 714
Tru9I TTAA 7 cut(s) 87, 111, 278, 360, 584, 686, 714
TscAI CASTG 1 cut(s) 409
TseFI GTSAC 3 cut(s) 155, 404, 908
TseI GCWGC 3 cut(s) 273, 653, 851
Tsp45I GTSAC 3 cut(s) 155, 404, 908
TspDTI ATGAA 2 cut(s) 312, 959
TspGWI ACGGA 3 cut(s) 73, 742, 753
TspRI CASTG 1 cut(s) 409
VpaK11BI GGWCC 1 cut(s) 761
XagI CCTNNNNNAGG 1 cut(s) 241
XbaI TCTAGA 1 cut(s) 659
XceI RCATGY 1 cut(s) 233
XmnI GAANNNNTTC 1 cut(s) 26
XspI CTAG 5 cut(s) 267, 495, 660, 906, 935
ZraI GACGTC 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.