Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017142

Physical Location & Seq

Genomic Coordinates Reverse (-)

43641268 .. 43642196

Gene Structure 929 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38820

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCCACACAAGGAGATTTGGCAGAAGACATCATAGCCCTTCCGTTCGTTAATGTGTCCAAAACCACCGTTGATTCCCTTTTCTTATTTTCCTGTGCACCCAAATTGCTTCTGAAAGGCCTAGCATCTGGGGCTAGAGGAATGTTAGGACTCGGAAGGAGTCGAGTTTCGGTGGCGTCGCAAATTGCTGCAGCATTTGGTTCCAAACCGCAGTTCATCCTCTGCCTGTCTTCATCAAACGGGGTCGTTTTACACGACAATGGGGAATATGGTTCTTATTTTGTCTCTGGAGTTTCAGACTCACTCACATACACACCCCTGGTTACTAAAGTTGACTCACCACATGAGTATTTCATCAACCTGAAGTCAATCAGAGTCAACGGGAAGCAATTGTCTCTGAATTACAAAGAGGGTCTTGGAGGGATTAAGCTAAGCACAGTTGTTCCCTACTCTACTATGGAGAGCTCAGTCTATTCTGTATTTGTCAAAGCTTATGAGCAAGCTGCTGTGGCTATGAACATGACTAGGGTGGATTCTGTGGCACCATTTGGACTATGTTTTGGTTCCAAAAACATCGATGGCATTCGGGTTGGTTCAAGAGCGCCTGTTGTTGATTTGGGGCTGCAGAGTGAGATGGTGAAGTGGAGAATTCATGGTAGAAACTCCATGGTTCAAGTGAGCGATGAAGTTATGTGTTTGGGGTTCTTGGATGGTGGTTTGGAGCAGAAGACTTCAATTGTATTAGGGGCTCATCAATTGGAGGATACCCCGTTACATTTTGATTTGGGTGCTTCTATGCTAGGATTTAGTTATTCCACGTTGATGGATCAGAATACTTGCACTGATCTGGGACTGGGTTTTGGGTTTAAAGATTCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005488 GO:0005515 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0042802 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

293

Amino Acids

31.39

Weight (kDa)

5.95

Isoelectric Point (pI)

28.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	2 - 81	2.6e-15	Xylanase inhibitor N-terminal
TAXi_C	PF14541	116 - 270	3.1e-47	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19120
fragaria_vesca	FvH4_4g14600
malus_domestica	MD16G1185400.v1.1
prunus_persica	Prupe.1G152000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0418211
rosa_laevigata	RLG00000007885
rosa_roxburghii	Rroxscaffold_5G00361420
rosa_rugosa	Rorug04G0151200
rosa_samantha	Rh4AG212900 Rh4BG217800 Rh4CG224600 Rh4DG211400
rosa_wichuraiana	Rw4G018080

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	541
AciI	CCGC	1 cut(s)	209
AclWI	GGATC	1 cut(s)	834
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	648
AcuI	CTGAAG	1 cut(s)	383
AcyI	GRCGYC	1 cut(s)	176
AgsI	TTSAA	4 cut(s)	597, 674, 735, 876
AjnI	CCWGG	1 cut(s)	318
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	4 cut(s)	430, 465, 491, 503
AluI	AGCT	4 cut(s)	430, 465, 491, 503
Alw21I	GWGCWC	2 cut(s)	100, 467
Alw26I	GTCTC	2 cut(s)	289, 399
Alw44I	GTGCAC	1 cut(s)	96
AlwI	GGATC	1 cut(s)	834
AoxI	GGCC	2 cut(s)	3, 118
ApaLI	GTGCAC	1 cut(s)	96
ApeKI	GCWGC	4 cut(s)	188, 191, 503, 622
ApoI	RAATTY	1 cut(s)	648
AspLEI	GCGC	1 cut(s)	604
AsuHPI	GGTGA	2 cut(s)	330, 649
BaeGI	GKGCMC	1 cut(s)	100
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	541
BanII	GRGCYC	2 cut(s)	467, 751
BbsI	GAAGAC	3 cut(s)	33, 222, 734
Bbv12I	GWGCWC	2 cut(s)	100, 467
BbvI	GCAGC	4 cut(s)	175, 203, 490, 609
BccI	CCATC	4 cut(s)	572, 628, 704, 817
BciT130I	CCWGG	1 cut(s)	320
BciVI	GTATCC	1 cut(s)	757
BcoDI	GTCTC	2 cut(s)	289, 399
BfaI	CTAG	4 cut(s)	122, 135, 525, 800
BfmI	CTRYAG	2 cut(s)	189, 623
BfoI	RGCGCY	1 cut(s)	605
BfuI	GTATCC	1 cut(s)	757
BisI	GCNGC	4 cut(s)	189, 192, 504, 623
BlpI	GCTNAGC	1 cut(s)	431
BlsI	GCNGC	4 cut(s)	190, 193, 505, 624
Bme1390I	CCNGG	1 cut(s)	320
BmiI	GGNNCC	3 cut(s)	202, 543, 565
BmrFI	CCNGG	1 cut(s)	320
BmrI	ACTGGG	1 cut(s)	863
BmsI	GCATC	1 cut(s)	134
BmuI	ACTGGG	1 cut(s)	863
BpiI	GAAGAC	3 cut(s)	33, 222, 734
BpmI	CTGGAG	1 cut(s)	309
Bpu1102I	GCTNAGC	1 cut(s)	431
Bsa29I	ATCGAT	1 cut(s)	576
BsaHI	GRCGYC	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	318, 666
Bse1I	ACTGG	1 cut(s)	858
BseBI	CCWGG	1 cut(s)	320
BseCI	ATCGAT	1 cut(s)	576
BseDI	CCNNGG	2 cut(s)	318, 666
BseGI	GGATG	2 cut(s)	216, 715
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	1 cut(s)	858
BseSI	GKGCMC	1 cut(s)	100
BseXI	GCAGC	4 cut(s)	175, 203, 490, 609
BshFI	GGCC	2 cut(s)	5, 120
BshNI	GGYRCC	1 cut(s)	541
BshVI	ATCGAT	1 cut(s)	576
BsiHKAI	GWGCWC	2 cut(s)	100, 467
BslFI	GGGAC	1 cut(s)	864
BsmAI	GTCTC	2 cut(s)	289, 399
BsmFI	GGGAC	1 cut(s)	864
BsmI	GAATGC	1 cut(s)	582
BsnI	GGCC	2 cut(s)	5, 120
Bsp1286I	GDGCHC	3 cut(s)	100, 467, 751
Bsp143I	GATC	2 cut(s)	826, 844
Bsp1720I	GCTNAGC	1 cut(s)	431
Bsp19I	CCATGG	1 cut(s)	666
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	2 cut(s)	5, 120
BspCNI	CTCAG	1 cut(s)	479
BspDI	ATCGAT	1 cut(s)	576
BspLI	GGNNCC	3 cut(s)	202, 543, 565
BspMAI	CTGCAG	2 cut(s)	193, 627
BspPI	GGATC	1 cut(s)	834
BspT107I	GGYRCC	1 cut(s)	541
BsrI	ACTGG	1 cut(s)	858
BssECI	CCNNGG	2 cut(s)	318, 666
BssMI	GATC	2 cut(s)	826, 844
BssNI	GRCGYC	1 cut(s)	176
BssT1I	CCWWGG	1 cut(s)	666
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	2 cut(s)	70, 439
BstACI	GRCGYC	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	501
BstDEI	CTNAG	2 cut(s)	431, 466
BstDSI	CCRYGG	1 cut(s)	666
BstF5I	GGATG	2 cut(s)	216, 715
BstH2I	RGCGCY	1 cut(s)	605
BstHHI	GCGC	1 cut(s)	604
BstKTI	GATC	2 cut(s)	829, 847
BstMAI	GTCTC	2 cut(s)	289, 399
BstMBI	GATC	2 cut(s)	826, 844
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 509
BstNI	CCWGG	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	318
BstSFI	CTRYAG	2 cut(s)	189, 623
BstSLI	GKGCMC	1 cut(s)	100
BstV1I	GCAGC	4 cut(s)	175, 203, 490, 609
BstV2I	GAAGAC	3 cut(s)	33, 222, 734
BstXI	CCANNNNNNTGG	1 cut(s)	823
Bsu15I	ATCGAT	1 cut(s)	576
BsuI	GTATCC	1 cut(s)	757
BsuRI	GGCC	2 cut(s)	5, 120
BsuTUI	ATCGAT	1 cut(s)	576
BtgI	CCRYGG	1 cut(s)	666
BtgZI	GCGATG	1 cut(s)	696
BtsCI	GGATG	2 cut(s)	216, 715
BtsIMutI	CAGTG	1 cut(s)	840
Cac8I	GCNNGC	1 cut(s)	501
CfoI	GCGC	1 cut(s)	604
ClaI	ATCGAT	1 cut(s)	576
CseI	GACGC	1 cut(s)	165
CviAII	CATG	4 cut(s)	344, 520, 653, 667
DdeI	CTNAG	2 cut(s)	431, 466
DpnI	GATC	2 cut(s)	828, 846
DpnII	GATC	2 cut(s)	826, 844
DraI	TTTAAA	1 cut(s)	868
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	465
Eco130I	CCWWGG	1 cut(s)	666
Eco147I	AGGCCT	1 cut(s)	120
Eco24I	GRGCYC	2 cut(s)	467, 751
Eco53kI	GAGCTC	1 cut(s)	465
Eco57I	CTGAAG	1 cut(s)	383
EcoICRI	GAGCTC	1 cut(s)	465
EcoRI	GAATTC	1 cut(s)	648
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	666
EcoT38I	GRGCYC	2 cut(s)	467, 751
ErhI	CCWWGG	1 cut(s)	666
FaeI	CATG	4 cut(s)	347, 523, 656, 670
FalI	AAGNNNNNCTT	2 cut(s)	399, 431
FaqI	GGGAC	1 cut(s)	864
FatI	CATG	4 cut(s)	343, 519, 652, 666
Fnu4HI	GCNGC	4 cut(s)	189, 192, 504, 623
FokI	GGATG	2 cut(s)	203, 722
FriOI	GRGCYC	2 cut(s)	467, 751
Fsp4HI	GCNGC	4 cut(s)	189, 192, 504, 623
FspBI	CTAG	4 cut(s)	122, 135, 525, 800
GlaI	GCGC	1 cut(s)	603
GluI	GCNGC	4 cut(s)	189, 192, 504, 623
GsuI	CTGGAG	1 cut(s)	309
HaeII	RGCGCY	1 cut(s)	605
HaeIII	GGCC	2 cut(s)	5, 120
HgaI	GACGC	1 cut(s)	165
HhaI	GCGC	1 cut(s)	604
Hin1I	GRCGYC	1 cut(s)	176
Hin1II	CATG	4 cut(s)	347, 523, 656, 670
Hin6I	GCGC	1 cut(s)	602
HinP1I	GCGC	1 cut(s)	602
HincII	GTYRAC	2 cut(s)	334, 379
HindII	GTYRAC	2 cut(s)	334, 379
HindIII	AAGCTT	1 cut(s)	489
HinfI	GANTC	8 cut(s)	74, 150, 160, 299, 335, 375, 533, 872
HphI	GGTGA	2 cut(s)	330, 649
Hpy166II	GTNNAC	3 cut(s)	98, 334, 379
Hpy188I	TCNGA	6 cut(s)	114, 155, 298, 374, 399, 831
Hpy188III	TCNNGA	2 cut(s)	288, 597
Hpy8I	GTNNAC	3 cut(s)	98, 334, 379
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	2 cut(s)	50, 150
HpyCH4III	ACNGT	2 cut(s)	70, 439
HpyCH4IV	ACGT	1 cut(s)	818
HpyCH4V	TGCA	4 cut(s)	98, 191, 625, 840
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 509
HpyF3I	CTNAG	2 cut(s)	431, 466
HpySE526I	ACGT	1 cut(s)	818
Hsp92I	GRCGYC	1 cut(s)	176
Hsp92II	CATG	4 cut(s)	347, 523, 656, 670
HspAI	GCGC	1 cut(s)	602
Kzo9I	GATC	2 cut(s)	826, 844
LmnI	GCTCC	1 cut(s)	721
Lsp1109I	GCAGC	4 cut(s)	175, 203, 490, 609
LweI	GCATC	1 cut(s)	134
MaeI	CTAG	4 cut(s)	122, 135, 525, 800
MaeII	ACGT	1 cut(s)	818
MaeIII	GTNAC	2 cut(s)	322, 771
MalI	GATC	2 cut(s)	828, 846
MboI	GATC	2 cut(s)	826, 844
MboII	GAAGA	3 cut(s)	38, 222, 739
MfeI	CAATTG	3 cut(s)	389, 735, 755
MhlI	GDGCHC	3 cut(s)	100, 467, 751
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	104, 183, 389, 400, 648, 735, 755
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	5 cut(s)	144, 169, 293, 329, 384
MnlI	CCTC	5 cut(s)	131, 230, 403, 413, 754
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	51, 426, 867
MslI	CAYNNNNRTG	2 cut(s)	258, 821
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	320
MunI	CAATTG	3 cut(s)	389, 735, 755
Mva1269I	GAATGC	1 cut(s)	582
MvaI	CCWGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	2 cut(s)	131, 509
NcoI	CCATGG	1 cut(s)	666
NdeII	GATC	2 cut(s)	826, 844
NlaIII	CATG	4 cut(s)	347, 523, 656, 670
NlaIV	GGNNCC	3 cut(s)	202, 543, 565
PceI	AGGCCT	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PctI	GAATGC	1 cut(s)	582
PfeI	GAWTC	3 cut(s)	74, 533, 872
PkrI	GCNGC	4 cut(s)	190, 193, 505, 624
PleI	GAGTC	5 cut(s)	144, 168, 293, 329, 383
PpsI	GAGTC	5 cut(s)	144, 168, 293, 329, 383
Psp124BI	GAGCTC	1 cut(s)	467
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	3 cut(s)	202, 543, 565
PstI	CTGCAG	2 cut(s)	193, 627
RseI	CAYNNNNRTG	2 cut(s)	258, 821
SacI	GAGCTC	1 cut(s)	467
SaqAI	TTAA	3 cut(s)	51, 426, 867
SatI	GCNGC	4 cut(s)	189, 192, 504, 623
Sau3AI	GATC	2 cut(s)	826, 844
SchI	GAGTC	5 cut(s)	144, 169, 293, 329, 384
ScrFI	CCNGG	1 cut(s)	320
SduI	GDGCHC	3 cut(s)	100, 467, 751
SetI	ASST	6 cut(s)	363, 432, 467, 493, 505, 821
SfaNI	GCATC	1 cut(s)	134
SfcI	CTRYAG	2 cut(s)	189, 623
SmiMI	CAYNNNNRTG	2 cut(s)	258, 821
Sse9I	AATT	7 cut(s)	104, 183, 389, 400, 648, 735, 755
SseBI	AGGCCT	1 cut(s)	120
SsiI	CCGC	1 cut(s)	209
SspMI	CTAG	4 cut(s)	122, 135, 525, 800
SstI	GAGCTC	1 cut(s)	467
StuI	AGGCCT	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	318
StyI	CCWWGG	1 cut(s)	666
TaaI	ACNGT	2 cut(s)	70, 439
TaiI	ACGT	1 cut(s)	821
TaqI	TCGA	2 cut(s)	163, 576
TasI	AATT	7 cut(s)	104, 183, 389, 400, 648, 735, 755
TfiI	GAWTC	3 cut(s)	74, 533, 872
Tru1I	TTAA	3 cut(s)	51, 426, 867
Tru9I	TTAA	3 cut(s)	51, 426, 867
TscAI	CASTG	1 cut(s)	847
TseI	GCWGC	4 cut(s)	188, 191, 503, 622
TspDTI	ATGAA	6 cut(s)	205, 222, 343, 530, 641, 699
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	1 cut(s)	847
VneI	GTGCAC	1 cut(s)	96
XapI	RAATTY	1 cut(s)	648
XspI	CTAG	4 cut(s)	122, 135, 525, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.