Rorug04G0151200

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0017142
Physical Location & Seq
Forward (+)
26465840 .. 26467311
1472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0151200.1

Sequence Viewer

Length: 852 bp
ATGGCCACCAACACTTTCCAATCCACATACCACAATCACCACTCTCTTGGTCTCAACCACCACTCTACTACTCATGACATTCCTCCTTCCACCACCACTCTTTTCCTTAAACCCACACACACCACCGTAACCTCCTCCCATCTCTCTTCTCATCACCACCTTCACTCTCTCGTGATCTCTTCAACCAAAACGTTCTCAGTCTCGCCCACCACCTCATTTTCGACTCCTTCTTCTTCCTCCTCCTCCTCCTCCAAATCCAACACCTTCGACCTCCTACAGCAGCACCTCTCCGCCCAAAACTTCCGCGAAGCCGACGAAGAGACTCGCCGCCTCCTCATCGTCCTCGCAGGCGAGGCAGCCCAAAAGCGAGGATACGTCTTTTTCTCCGAGGTCCAGTTCATCCCCGAAGCCGACCTCAAAGCCATTGACGACCTCTGGAGACAGCACAGCAACAACAGGTTCGGCTACTCCGTTCAGAAGAGGATATTCTTCGAAAAGGTTAACCAGGACTTCACCAACTTCTTCATCAAAGTCGGGTGGATGAAGAAGCTCGACACCGAGGTCGACCAGTACAACTACAGAGCTTTCCCTAACGAATTCATCTGGGAGCTCAACAACGACACACCCGAGGGTCATCTGCCATTGACGAATGCTTTGAGAGGGACCCAGTTGCTGAAATGCGTTCTGAACCATCCAGCATTTAAGAACACCGAAGAAGAAGAACGGCTACTCCAAGCGGGCAGGGCCGCCGTTGAAGGTAATAAAGCAGCTAGTGGTGGAGGATTGAAGGGGTTAATGGATGGATCCAAACCTCTGAACAAGAGGGTGCTCAAATCAGACTATAGCTTTTGA

Protein Analysis

283

Amino Acids

31.93

Weight (kDa)

7.94

Isoelectric Point (pI)

34.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUN4 PF05419 83 - 232 3.9e-50 GUN4-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19120
fragaria_vesca FvH4_4g14600
malus_domestica MD16G1185400.v1.1
prunus_persica Prupe.1G152000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0418211
rosa_laevigata RLG00000007885
rosa_roxburghii Rroxscaffold_5G00361420
rosa_rugosa Rorug04G0151200
rosa_samantha Rh4AG212900 Rh4BG217800 Rh4CG224600 Rh4DG211400
rosa_wichuraiana Rw4G018080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 560
AccI GTMKAC 1 cut(s) 564
AccII CGCG 1 cut(s) 306
AciI CCGC 5 cut(s) 291, 304, 328, 737, 747
AclI AACGTT 1 cut(s) 191
AclWI GGATC 2 cut(s) 798, 811
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 596
AfaI GTAC 1 cut(s) 572
AgsI TTSAA 3 cut(s) 183, 755, 787
AjnI CCWGG 1 cut(s) 504
AloI GAACNNNNNNTCC 2 cut(s) 714, 746
AluBI AGCT 5 cut(s) 550, 584, 610, 770, 846
AluI AGCT 5 cut(s) 550, 584, 610, 770, 846
Alw21I GWGCWC 2 cut(s) 612, 831
Alw26I GTCTC 4 cut(s) 56, 205, 314, 433
AlwI GGATC 2 cut(s) 798, 811
AlwNI CAGNNNCTG 1 cut(s) 673
Ama87I CYCGRG 1 cut(s) 626
AoxI GGCC 2 cut(s) 3, 744
ApeKI GCWGC 3 cut(s) 280, 356, 767
ApoI RAATTY 1 cut(s) 596
ArsI GACNNNNNNTTYG 2 cut(s) 637, 669
AspS9I GGNCC 3 cut(s) 391, 663, 744
AsuHPI GGTGA 3 cut(s) 29, 146, 505
AsuII TTCGAA 1 cut(s) 492
AvaI CYCGRG 1 cut(s) 626
AvaII GGWCC 2 cut(s) 391, 663
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 803
BanII GRGCYC 1 cut(s) 612
BarI GAAGNNNNNNTAC 2 cut(s) 711, 743
BauI CACGAG 1 cut(s) 170
Bbv12I GWGCWC 2 cut(s) 612, 831
BbvI GCAGC 3 cut(s) 292, 368, 779
BccI CCATC 3 cut(s) 147, 699, 794
BceAI ACGGC 2 cut(s) 734, 740
BciT130I CCWGG 1 cut(s) 506
BciVI GTATCC 1 cut(s) 365
BcoDI GTCTC 4 cut(s) 56, 205, 314, 433
BfaI CTAG 1 cut(s) 771
BfmI CTRYAG 3 cut(s) 275, 577, 841
BfuI GTATCC 1 cut(s) 365
BisI GCNGC 5 cut(s) 281, 328, 357, 747, 768
BlsI GCNGC 5 cut(s) 282, 329, 358, 748, 769
Bme1390I CCNGG 1 cut(s) 506
Bme18I GGWCC 2 cut(s) 391, 663
BmeT110I CYCGRG 1 cut(s) 626
BmgT120I GGNCC 3 cut(s) 391, 663, 744
BmiI GGNNCC 3 cut(s) 664, 665, 805
BmrFI CCNGG 1 cut(s) 506
BmrI ACTGGG 1 cut(s) 661
BmuI ACTGGG 1 cut(s) 661
BpmI CTGGAG 1 cut(s) 457
Bpu14I TTCGAA 1 cut(s) 492
BsaI GGTCTC 1 cut(s) 56
BsaJI CCNNGG 3 cut(s) 387, 558, 627
BsaXI ACNNNNNCTCC 2 cut(s) 714, 744
Bse1I ACTGG 3 cut(s) 394, 568, 667
BseBI CCWGG 1 cut(s) 506
BseDI CCNNGG 3 cut(s) 387, 558, 627
BseGI GGATG 4 cut(s) 399, 546, 691, 805
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 3 cut(s) 394, 568, 667
BseRI GAGGAG 6 cut(s) 124, 229, 232, 235, 238, 323
BseXI GCAGC 3 cut(s) 292, 368, 779
Bsh1236I CGCG 1 cut(s) 306
BshFI GGCC 2 cut(s) 5, 746
BsiHKAI GWGCWC 2 cut(s) 612, 831
BsiHKCI CYCGRG 1 cut(s) 626
BslFI GGGAC 1 cut(s) 676
BsmAI GTCTC 4 cut(s) 56, 205, 314, 433
BsmFI GGGAC 1 cut(s) 676
BsmI GAATGC 1 cut(s) 655
BsnI GGCC 2 cut(s) 5, 746
Bso31I GGTCTC 1 cut(s) 56
BsoBI CYCGRG 1 cut(s) 626
Bsp119I TTCGAA 1 cut(s) 492
Bsp1286I GDGCHC 2 cut(s) 612, 831
Bsp143I GATC 2 cut(s) 174, 803
BspACI CCGC 5 cut(s) 291, 304, 328, 737, 747
BspANI GGCC 2 cut(s) 5, 746
BspCNI CTCAG 1 cut(s) 209
BspFNI CGCG 1 cut(s) 306
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 3 cut(s) 664, 665, 805
BspPI GGATC 2 cut(s) 798, 811
BspT104I TTCGAA 1 cut(s) 492
BspTNI GGTCTC 1 cut(s) 56
BsrI ACTGG 3 cut(s) 394, 568, 667
BssECI CCNNGG 3 cut(s) 387, 558, 627
BssMI GATC 2 cut(s) 174, 803
BssSI CACGAG 1 cut(s) 170
Bst2BI CACGAG 1 cut(s) 170
Bst2UI CCWGG 1 cut(s) 506
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 4 cut(s) 151, 184, 312, 473
BstBI TTCGAA 1 cut(s) 492
BstC8I GCNNGC 2 cut(s) 349, 739
BstDEI CTNAG 1 cut(s) 196
BstF5I GGATG 4 cut(s) 399, 546, 691, 805
BstFNI CGCG 1 cut(s) 306
BstKTI GATC 2 cut(s) 177, 806
BstMAI GTCTC 4 cut(s) 56, 205, 314, 433
BstMBI GATC 2 cut(s) 174, 803
BstMWI GCNNNNNNNGC 2 cut(s) 353, 743
BstNI CCWGG 1 cut(s) 506
BstSCI CCNGG 1 cut(s) 504
BstSFI CTRYAG 3 cut(s) 275, 577, 841
BstUI CGCG 1 cut(s) 306
BstV1I GCAGC 3 cut(s) 292, 368, 779
BstX2I RGATCY 1 cut(s) 803
BstXI CCANNNNNNTGG 1 cut(s) 47
BstYI RGATCY 1 cut(s) 803
BsuI GTATCC 1 cut(s) 365
BsuRI GGCC 2 cut(s) 5, 746
BtsCI GGATG 4 cut(s) 399, 546, 691, 805
Cac8I GCNNGC 2 cut(s) 349, 739
CaiI CAGNNNCTG 1 cut(s) 673
CciI TCATGA 1 cut(s) 73
Cfr13I GGNCC 3 cut(s) 391, 663, 744
Csp6I GTAC 1 cut(s) 571
CviAII CATG 1 cut(s) 74
CviQI GTAC 1 cut(s) 571
DdeI CTNAG 1 cut(s) 196
DpnI GATC 2 cut(s) 176, 805
DpnII GATC 2 cut(s) 174, 803
DrdI GACNNNNNNGTC 1 cut(s) 560
DseDI GACNNNNNNGTC 1 cut(s) 560
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 151, 184, 312, 473
EarI CTCTTC 4 cut(s) 151, 184, 312, 473
EciI GGCGGA 1 cut(s) 280
Ecl136II GAGCTC 1 cut(s) 610
Eco24I GRGCYC 1 cut(s) 612
Eco31I GGTCTC 1 cut(s) 56
Eco47I GGWCC 2 cut(s) 391, 663
Eco53kI GAGCTC 1 cut(s) 610
Eco88I CYCGRG 1 cut(s) 626
EcoICRI GAGCTC 1 cut(s) 610
EcoO109I RGGNCCY 1 cut(s) 663
EcoRI GAATTC 1 cut(s) 596
EcoRII CCWGG 1 cut(s) 504
EcoT38I GRGCYC 1 cut(s) 612
FaeI CATG 1 cut(s) 77
FaiI YATR 3 cut(s) 28, 75, 843
FaqI GGGAC 1 cut(s) 676
FatI CATG 1 cut(s) 73
FauI CCCGC 1 cut(s) 730
FblI GTMKAC 1 cut(s) 564
Fnu4HI GCNGC 5 cut(s) 281, 328, 357, 747, 768
FokI GGATG 4 cut(s) 386, 553, 678, 812
FriOI GRGCYC 1 cut(s) 612
Fsp4HI GCNGC 5 cut(s) 281, 328, 357, 747, 768
FspBI CTAG 1 cut(s) 771
GluI GCNGC 5 cut(s) 281, 328, 357, 747, 768
GsuI CTGGAG 1 cut(s) 457
HaeIII GGCC 2 cut(s) 5, 746
Hin1II CATG 1 cut(s) 77
HincII GTYRAC 2 cut(s) 502, 565
HindII GTYRAC 2 cut(s) 502, 565
HinfI GANTC 2 cut(s) 223, 322
HpaI GTTAAC 1 cut(s) 502
HphI GGTGA 3 cut(s) 29, 146, 505
Hpy166II GTNNAC 2 cut(s) 502, 565
Hpy188I TCNGA 5 cut(s) 388, 477, 687, 816, 838
Hpy188III TCNNGA 3 cut(s) 74, 172, 436
Hpy8I GTNNAC 2 cut(s) 502, 565
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 6 cut(s) 96, 170, 237, 274, 749, 781
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 2 cut(s) 191, 375
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 743
HpyF3I CTNAG 1 cut(s) 196
HpySE526I ACGT 2 cut(s) 191, 375
Hsp92II CATG 1 cut(s) 77
KflI GGGWCCC 1 cut(s) 663
KspAI GTTAAC 1 cut(s) 502
Kzo9I GATC 2 cut(s) 174, 803
LmnI GCTCC 1 cut(s) 607
Lsp1109I GCAGC 3 cut(s) 292, 368, 779
MaeI CTAG 1 cut(s) 771
MaeII ACGT 2 cut(s) 191, 375
MaeIII GTNAC 1 cut(s) 127
MalI GATC 2 cut(s) 176, 805
MboI GATC 2 cut(s) 174, 803
MflI RGATCY 1 cut(s) 803
MhlI GDGCHC 2 cut(s) 612, 831
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 596
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 217, 316
MmeI TCCRAC 1 cut(s) 282
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 108, 501, 702, 794
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 506
Mva1269I GAATGC 1 cut(s) 655
MvaI CCWGG 1 cut(s) 506
MvnI CGCG 1 cut(s) 306
MwoI GCNNNNNNNGC 2 cut(s) 353, 743
NdeII GATC 2 cut(s) 174, 803
NlaIII CATG 1 cut(s) 77
NlaIV GGNNCC 3 cut(s) 664, 665, 805
NspV TTCGAA 1 cut(s) 492
PagI TCATGA 1 cut(s) 73
PcsI WCGNNNNNNNCGW 2 cut(s) 468, 624
PctI GAATGC 1 cut(s) 655
PkrI GCNGC 5 cut(s) 282, 329, 358, 748, 769
PleI GAGTC 2 cut(s) 217, 316
PpsI GAGTC 2 cut(s) 217, 316
PpuMI RGGWCCY 1 cut(s) 663
Psp124BI GAGCTC 1 cut(s) 612
Psp1406I AACGTT 1 cut(s) 191
Psp5II RGGWCCY 1 cut(s) 663
Psp6I CCWGG 1 cut(s) 504
PspGI CCWGG 1 cut(s) 504
PspN4I GGNNCC 3 cut(s) 664, 665, 805
PspPI GGNCC 3 cut(s) 391, 663, 744
PspPPI RGGWCCY 1 cut(s) 663
PstNI CAGNNNCTG 1 cut(s) 673
PsuI RGATCY 1 cut(s) 803
RsaI GTAC 1 cut(s) 572
RsaNI GTAC 1 cut(s) 571
SacI GAGCTC 1 cut(s) 612
SalI GTCGAC 1 cut(s) 563
SaqAI TTAA 4 cut(s) 108, 501, 702, 794
SatI GCNGC 5 cut(s) 281, 328, 357, 747, 768
Sau3AI GATC 2 cut(s) 174, 803
Sau96I GGNCC 3 cut(s) 391, 663, 744
SchI GAGTC 2 cut(s) 217, 316
ScrFI CCNGG 1 cut(s) 506
SduI GDGCHC 2 cut(s) 612, 831
SfcI CTRYAG 3 cut(s) 275, 577, 841
SfuI TTCGAA 1 cut(s) 492
SinI GGWCC 2 cut(s) 391, 663
Sse9I AATT 1 cut(s) 596
SsiI CCGC 5 cut(s) 291, 304, 328, 737, 747
SspMI CTAG 1 cut(s) 771
SstI GAGCTC 1 cut(s) 612
StyD4I CCNGG 1 cut(s) 504
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 2 cut(s) 194, 378
TaqI TCGA 5 cut(s) 221, 267, 492, 552, 564
TasI AATT 1 cut(s) 596
TatI WGTACW 1 cut(s) 570
TauI GCSGC 2 cut(s) 330, 749
Tru1I TTAA 4 cut(s) 108, 501, 702, 794
Tru9I TTAA 4 cut(s) 108, 501, 702, 794
TseI GCWGC 3 cut(s) 280, 356, 767
TspDTI ATGAA 4 cut(s) 388, 514, 557, 589
TspGWI ACGGA 1 cut(s) 460
VpaK11BI GGWCC 2 cut(s) 391, 663
XapI RAATTY 1 cut(s) 596
XmiI GTMKAC 1 cut(s) 564
XspI CTAG 1 cut(s) 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.