Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0017142

Physical Location & Seq

Genomic Coordinates Reverse (-)

42130454 .. 42132126

Gene Structure 1673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00361420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCCACACAAGGGGATTTGGCACAAGACATCATAGCCCTTCCGTTCGTTGACGGGTCCAAAACAGAGCCCATCACCGCTGTTAATTCCTATTTTTTGTTTTCCTGTGCACCCAAATTGCTTCTGAAAGGCCTAGCAACTGGGGCTAGAGGAATGTTAGGACTCGGAAGGAGTCGAGTTTCGGTGGCGTCACAAATTGCTGCAGCATTTGGCTCCAAACCGCAGTTCATCCTCTGCCTGTCTTCATCAAACGGGGTCGTTTTACACGACAGTGGGGAATATGGTTCTTATTTTGTCTCTGGAGTTTCAGGCTCACTCACATACACACCCCTGGTTACTAAAGTTGACTCACCACATGAGTATATCATCAACCTGAAGTCAGTCAGAGTCAACGGGAAGCAATTGTCTCTGAATTACAAAGAGGGTCTTGGAGGGATTAAGCTAAGCACGGTTGTTCCCTACTCTACTTTGGAAAGCTCAGTCTATGCTGTATTTGTCAAAGCTTATGAGCAAGCTGCTTTGGCTATGAACATGACTAGGGTGGATTCTGTGGCACCATTTGGACTGTGTTTTGGTTCCAAAAACATCGATGGCATTCAGGTTGGTTCAAGAGCGCCTGTTGTTGATTTGGGGCTGCAGAGTGAGATGGTGAAGTGGAGAATTCATGGTAGAAGCTCCATGGTTCAAGTGAGCGATGAAGTTATGTGTTTGGGGTTCTTGGATGGTGGTTTGGAGCAGAAGCCTTCAATTGTGTTAGGGGGTCATCAATTGGAGGATACCCTGTTACATTTTGATTTGGGTGCTTCTATGCTAGGATTTAGTTCTTCCACGTTGATGGATCAGAATACTTGCTCTGATCTGGGACTGGGTTTTGGGTTTAAAGATTCAATCATGACTGGCATAACCACAGGCGGTGACGCTTTCAAGATGTTGTGTACCTCCCATTCCACAGAGGATCTAACCCTACTAGCCTTGCTTCTTTACCCAACCTCCTCTTCACTTGTTCTTCCACATTTCAGTTGGATGGACTTGCAAGTGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005488 GO:0005515 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0042802 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

347

Amino Acids

36.9

Weight (kDa)

5.62

Isoelectric Point (pI)

34.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	2 - 85	1.2e-14	Xylanase inhibitor N-terminal
TAXi_C	PF14541	120 - 274	1.8e-46	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19120
fragaria_vesca	FvH4_4g14600
malus_domestica	MD16G1185400.v1.1
prunus_persica	Prupe.1G152000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0418211
rosa_laevigata	RLG00000007885
rosa_roxburghii	Rroxscaffold_5G00361420
rosa_rugosa	Rorug04G0151200
rosa_samantha	Rh4AG212900 Rh4BG217800 Rh4CG224600 Rh4DG211400
rosa_wichuraiana	Rw4G018080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	553
AciI	CCGC	3 cut(s)	78, 221, 912
AclWI	GGATC	2 cut(s)	846, 963
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	660
AcuI	CTGAAG	1 cut(s)	395
AcyI	GRCGYC	1 cut(s)	188
AfaI	GTAC	1 cut(s)	937
AfiI	CCNNNNNNNGG	1 cut(s)	12
AgsI	TTSAA	5 cut(s)	609, 686, 747, 888, 925
AjnI	CCWGG	1 cut(s)	330
AjuI	GAANNNNNNNTTGG	4 cut(s)	209, 241, 979, 1011
AleI	CACNNNNGTG	1 cut(s)	270
AluBI	AGCT	5 cut(s)	442, 477, 503, 515, 675
AluI	AGCT	5 cut(s)	442, 477, 503, 515, 675
Alw21I	GWGCWC	1 cut(s)	112
Alw26I	GTCTC	2 cut(s)	301, 411
Alw44I	GTGCAC	1 cut(s)	108
AlwI	GGATC	2 cut(s)	846, 963
AoxI	GGCC	2 cut(s)	3, 130
ApaLI	GTGCAC	1 cut(s)	108
ApeKI	GCWGC	4 cut(s)	200, 203, 515, 634
ApoI	RAATTY	1 cut(s)	660
AspLEI	GCGC	1 cut(s)	616
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	4 cut(s)	67, 342, 661, 926
AvaII	GGWCC	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	112
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	553
BanII	GRGCYC	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	4 cut(s)	187, 215, 502, 621
BccI	CCATC	6 cut(s)	80, 584, 640, 716, 829, 1018
BciT130I	CCWGG	1 cut(s)	332
BciVI	GTATCC	1 cut(s)	769
BcoDI	GTCTC	2 cut(s)	301, 411
BfaI	CTAG	5 cut(s)	134, 147, 537, 812, 968
BfmI	CTRYAG	2 cut(s)	201, 635
BfoI	RGCGCY	1 cut(s)	617
BfuI	GTATCC	1 cut(s)	769
BisI	GCNGC	4 cut(s)	201, 204, 516, 635
BlpI	GCTNAGC	1 cut(s)	443
BlsI	GCNGC	4 cut(s)	202, 205, 517, 636
Bme1390I	CCNGG	1 cut(s)	332
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	4 cut(s)	58, 214, 555, 577
BmrFI	CCNGG	1 cut(s)	332
BmrI	ACTGGG	2 cut(s)	150, 875
BmuI	ACTGGG	2 cut(s)	150, 875
BpiI	GAAGAC	1 cut(s)	234
BpmI	CTGGAG	1 cut(s)	321
Bpu1102I	GCTNAGC	1 cut(s)	443
Bsa29I	ATCGAT	1 cut(s)	588
BsaHI	GRCGYC	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	330, 678
BsaXI	ACNNNNNCTCC	2 cut(s)	974, 1004
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse1I	ACTGG	3 cut(s)	145, 870, 901
BseBI	CCWGG	1 cut(s)	332
BseCI	ATCGAT	1 cut(s)	588
BseDI	CCNNGG	2 cut(s)	330, 678
BseGI	GGATG	3 cut(s)	228, 727, 1029
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	3 cut(s)	145, 870, 901
BseRI	GAGGAG	1 cut(s)	982
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	4 cut(s)	187, 215, 502, 621
BshFI	GGCC	2 cut(s)	5, 132
BshNI	GGYRCC	1 cut(s)	553
BshVI	ATCGAT	1 cut(s)	588
BsiHKAI	GWGCWC	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	876
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmAI	GTCTC	2 cut(s)	301, 411
BsmFI	GGGAC	1 cut(s)	876
BsmI	GAATGC	1 cut(s)	594
BsnI	GGCC	2 cut(s)	5, 132
Bsp1286I	GDGCHC	2 cut(s)	72, 112
Bsp143I	GATC	3 cut(s)	838, 856, 955
Bsp1720I	GCTNAGC	1 cut(s)	443
Bsp19I	CCATGG	1 cut(s)	678
BspACI	CCGC	3 cut(s)	78, 221, 912
BspANI	GGCC	2 cut(s)	5, 132
BspCNI	CTCAG	1 cut(s)	491
BspDI	ATCGAT	1 cut(s)	588
BspHI	TCATGA	1 cut(s)	891
BspLI	GGNNCC	4 cut(s)	58, 214, 555, 577
BspMAI	CTGCAG	2 cut(s)	205, 639
BspPI	GGATC	2 cut(s)	846, 963
BspT107I	GGYRCC	1 cut(s)	553
BsrI	ACTGG	3 cut(s)	145, 870, 901
BssECI	CCNNGG	2 cut(s)	330, 678
BssMI	GATC	3 cut(s)	838, 856, 955
BssNI	GRCGYC	1 cut(s)	188
BssT1I	CCWWGG	1 cut(s)	678
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	3 cut(s)	272, 451, 567
Bst6I	CTCTTC	1 cut(s)	1000
BstACI	GRCGYC	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	2 cut(s)	443, 478
BstDSI	CCRYGG	1 cut(s)	678
BstF5I	GGATG	3 cut(s)	228, 727, 1029
BstH2I	RGCGCY	1 cut(s)	617
BstHHI	GCGC	1 cut(s)	616
BstKTI	GATC	3 cut(s)	841, 859, 958
BstMAI	GTCTC	2 cut(s)	301, 411
BstMBI	GATC	3 cut(s)	838, 856, 955
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 521
BstNI	CCWGG	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	330
BstSFI	CTRYAG	2 cut(s)	201, 635
BstSLI	GKGCMC	1 cut(s)	112
BstV1I	GCAGC	4 cut(s)	187, 215, 502, 621
BstV2I	GAAGAC	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	955
BstXI	CCANNNNNNTGG	1 cut(s)	835
BstYI	RGATCY	1 cut(s)	955
Bsu15I	ATCGAT	1 cut(s)	588
BsuI	GTATCC	1 cut(s)	769
BsuRI	GGCC	2 cut(s)	5, 132
BsuTUI	ATCGAT	1 cut(s)	588
BtgI	CCRYGG	1 cut(s)	678
BtgZI	GCGATG	1 cut(s)	708
BtsCI	GGATG	3 cut(s)	228, 727, 1029
BtsIMutI	CAGTG	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	513
CciI	TCATGA	1 cut(s)	891
CfoI	GCGC	1 cut(s)	616
Cfr13I	GGNCC	1 cut(s)	57
ClaI	ATCGAT	1 cut(s)	588
CseI	GACGC	2 cut(s)	177, 926
Csp6I	GTAC	1 cut(s)	936
CviAII	CATG	5 cut(s)	356, 532, 665, 679, 892
CviQI	GTAC	1 cut(s)	936
DdeI	CTNAG	2 cut(s)	443, 478
DpnI	GATC	3 cut(s)	840, 858, 957
DpnII	GATC	3 cut(s)	838, 856, 955
DraI	TTTAAA	1 cut(s)	880
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	1000
EarI	CTCTTC	1 cut(s)	1000
Eco130I	CCWWGG	1 cut(s)	678
Eco147I	AGGCCT	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	395
EcoRI	GAATTC	1 cut(s)	660
EcoRII	CCWGG	1 cut(s)	330
EcoT14I	CCWWGG	1 cut(s)	678
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	678
FaeI	CATG	5 cut(s)	359, 535, 668, 682, 895
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FaqI	GGGAC	1 cut(s)	876
FatI	CATG	5 cut(s)	355, 531, 664, 678, 891
Fnu4HI	GCNGC	4 cut(s)	201, 204, 516, 635
FokI	GGATG	3 cut(s)	215, 734, 1036
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	4 cut(s)	201, 204, 516, 635
FspBI	CTAG	5 cut(s)	134, 147, 537, 812, 968
GlaI	GCGC	1 cut(s)	615
GluI	GCNGC	4 cut(s)	201, 204, 516, 635
GsuI	CTGGAG	1 cut(s)	321
HaeII	RGCGCY	1 cut(s)	617
HaeIII	GGCC	2 cut(s)	5, 132
HgaI	GACGC	2 cut(s)	177, 926
HhaI	GCGC	1 cut(s)	616
Hin1I	GRCGYC	1 cut(s)	188
Hin1II	CATG	5 cut(s)	359, 535, 668, 682, 895
Hin6I	GCGC	1 cut(s)	614
HinP1I	GCGC	1 cut(s)	614
HincII	GTYRAC	3 cut(s)	52, 346, 391
HindII	GTYRAC	3 cut(s)	52, 346, 391
HindIII	AAGCTT	1 cut(s)	501
HinfI	GANTC	6 cut(s)	162, 172, 347, 387, 545, 884
HphI	GGTGA	4 cut(s)	67, 342, 661, 926
Hpy166II	GTNNAC	5 cut(s)	52, 110, 346, 391, 936
Hpy188I	TCNGA	6 cut(s)	126, 167, 386, 411, 843, 856
Hpy188III	TCNNGA	4 cut(s)	300, 609, 892, 925
Hpy8I	GTNNAC	5 cut(s)	52, 110, 346, 391, 936
HpyAV	CCTTC	3 cut(s)	50, 162, 753
HpyCH4III	ACNGT	3 cut(s)	272, 451, 567
HpyCH4IV	ACGT	1 cut(s)	830
HpyCH4V	TGCA	4 cut(s)	110, 203, 637, 1033
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 521
HpyF3I	CTNAG	2 cut(s)	443, 478
HpySE526I	ACGT	1 cut(s)	830
Hsp92I	GRCGYC	1 cut(s)	188
Hsp92II	CATG	5 cut(s)	359, 535, 668, 682, 895
HspAI	GCGC	1 cut(s)	614
Kzo9I	GATC	3 cut(s)	838, 856, 955
LmnI	GCTCC	3 cut(s)	218, 680, 733
Lsp1109I	GCAGC	4 cut(s)	187, 215, 502, 621
MaeI	CTAG	5 cut(s)	134, 147, 537, 812, 968
MaeII	ACGT	1 cut(s)	830
MaeIII	GTNAC	4 cut(s)	189, 334, 783, 914
MalI	GATC	3 cut(s)	840, 858, 957
MboI	GATC	3 cut(s)	838, 856, 955
MboII	GAAGA	4 cut(s)	234, 816, 987, 998
MfeI	CAATTG	3 cut(s)	401, 747, 767
MflI	RGATCY	1 cut(s)	955
MhlI	GDGCHC	2 cut(s)	72, 112
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	8 cut(s)	85, 116, 195, 401, 412, 660, 747, 767
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	4 cut(s)	156, 181, 341, 396
MmeI	TCCRAC	1 cut(s)	1001
MnlI	CCTC	9 cut(s)	143, 242, 415, 425, 766, 946, 949, 1000, 1003
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	84, 438, 879
MslI	CAYNNNNRTG	2 cut(s)	270, 833
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	332
MunI	CAATTG	3 cut(s)	401, 747, 767
Mva1269I	GAATGC	1 cut(s)	594
MvaI	CCWGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	2 cut(s)	143, 521
NcoI	CCATGG	1 cut(s)	678
NdeII	GATC	3 cut(s)	838, 856, 955
NlaIII	CATG	5 cut(s)	359, 535, 668, 682, 895
NlaIV	GGNNCC	4 cut(s)	58, 214, 555, 577
NmuCI	GTSAC	2 cut(s)	189, 914
OliI	CACNNNNGTG	1 cut(s)	270
PagI	TCATGA	1 cut(s)	891
PceI	AGGCCT	1 cut(s)	132
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PctI	GAATGC	1 cut(s)	594
PfeI	GAWTC	2 cut(s)	545, 884
PkrI	GCNGC	4 cut(s)	202, 205, 517, 636
PleI	GAGTC	4 cut(s)	156, 180, 341, 395
PpsI	GAGTC	4 cut(s)	156, 180, 341, 395
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	4 cut(s)	58, 214, 555, 577
PspPI	GGNCC	1 cut(s)	57
PstI	CTGCAG	2 cut(s)	205, 639
PsuI	RGATCY	1 cut(s)	955
RsaI	GTAC	1 cut(s)	937
RsaNI	GTAC	1 cut(s)	936
RseI	CAYNNNNRTG	2 cut(s)	270, 833
SaqAI	TTAA	3 cut(s)	84, 438, 879
SatI	GCNGC	4 cut(s)	201, 204, 516, 635
Sau3AI	GATC	3 cut(s)	838, 856, 955
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	4 cut(s)	156, 181, 341, 396
ScrFI	CCNGG	1 cut(s)	332
SduI	GDGCHC	2 cut(s)	72, 112
SfcI	CTRYAG	2 cut(s)	201, 635
SinI	GGWCC	1 cut(s)	57
SmiMI	CAYNNNNRTG	2 cut(s)	270, 833
Sse9I	AATT	8 cut(s)	85, 116, 195, 401, 412, 660, 747, 767
SseBI	AGGCCT	1 cut(s)	132
SsiI	CCGC	3 cut(s)	78, 221, 912
SspMI	CTAG	5 cut(s)	134, 147, 537, 812, 968
StuI	AGGCCT	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	330
StyI	CCWWGG	1 cut(s)	678
TaaI	ACNGT	3 cut(s)	272, 451, 567
TaiI	ACGT	1 cut(s)	833
TaqI	TCGA	2 cut(s)	175, 588
TasI	AATT	8 cut(s)	85, 116, 195, 401, 412, 660, 747, 767
TfiI	GAWTC	2 cut(s)	545, 884
Tru1I	TTAA	3 cut(s)	84, 438, 879
Tru9I	TTAA	3 cut(s)	84, 438, 879
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	2 cut(s)	189, 914
TseI	GCWGC	4 cut(s)	200, 203, 515, 634
Tsp45I	GTSAC	2 cut(s)	189, 914
TspDTI	ATGAA	5 cut(s)	217, 234, 542, 653, 711
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	1 cut(s)	277
VneI	GTGCAC	1 cut(s)	108
VpaK11BI	GGWCC	1 cut(s)	57
XapI	RAATTY	1 cut(s)	660
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1017
XspI	CTAG	5 cut(s)	134, 147, 537, 812, 968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.