Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0017142

Physical Location & Seq

Genomic Coordinates Reverse (-)

15961586 .. 15962806

Gene Structure 1221 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1185400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGCTTCTTCTCTGCATTTCCTTCTTTTCTCTTCATTTCTCTACACTTTCAGCATTTCTCAAGCCAAACCCTACAACCAACTAAATGGTCTCATTTTCCATGTGAAAAAAGATGTGTCTACTCTCCAGTATGTGACCGAAATTCACCATGGCACTCCACTTGTACCCACAAAGCTTGTAGTTGATCTCGGCGGTCCATTTCTCTGGCTCAACTGTGCATCATCGTCTTCTAGCCGTCTGATTTCTCAGCGCTCAATCCAGTGCCTTGCAGCAAAGCCAAAACCCCAGGATCAGGGTAGCAACAAGAAGTGTGATATTTTCACGGAAAATAGGATCACCCAAGTGGCGACACAAGGGGATTTACTAGAAGACATCATGGCCGTTGATCAAGTCACAGATGGGTCAAAGACAGGATCAAAATCAATCACCACAGTTGGTTACAACTTCCTTTTTTCTTGTGCACCCATGTTCTTGTTAAACGGCATCGCAAGTGGCGCAAAGGGAATGTTAGGCCTCGGAAGGACTCAAATGTCAATGGCCTCACAAATTTCTGCCCAACTCAGCTCCAAACTCCAATTCATCATCTGCCTTTCTTCATCAAACGGTGTCGTCTTACACGAAAACGGCCACCACAGTTCGAATTTTCGCTCGAAATTTCCGGACTCAATGACATACACACCCCTTGTTAACCAAGTTGAGTCACCACATGAGTACATCATCAATTTGAAGTCCATTAAAATTCGTGGGAAGAAAATGTCTCTGGATATTGAAGAAGGGAAGATTAAGCTAAGCACAATTGTTCCCTACACTACTATGGAGAGCTCAATTTATGCTACATTTACTAAAGCTTATGAGCAGGCTGCAATGTCTATGAACATGACTAGGGTTTCCCCTGTGGCACCATTTGGGCAATGTTTTAGTTCACGAAAAAAAGATGGCACGTTGGTCGGTCCAAAAGTGCCGGTTATCGATCTGGTGCTGCAGAGTGAGTTGGTCAAGTGGAGAATTCACGGCAGAAACTCGATGGTTCAAGTGAGAAACGAAGTTATGTGTCTGGGGTTTTTGGATGGAGGTTTGAACTTGAAGACTTCGATGGTAATAGGGGGTTATCAATTGGAGGATACCCTTCTACATTTTGATGTAGGTGCTTCTAGGCTAGGATTTACTCAACAAAGTTGTTCTGAGTTGAGATTAGACTCTGCGTTTAAACATACATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005488 GO:0005515 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0042802 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

407

Amino Acids

44.73

Weight (kDa)

9.06

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	44 - 202	4.8e-32	Xylanase inhibitor N-terminal
TAXi_C	PF14541	237 - 389	2.3e-46	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19120
fragaria_vesca	FvH4_4g14600
malus_domestica	MD16G1185400.v1.1
prunus_persica	Prupe.1G152000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0418211
rosa_laevigata	RLG00000007885
rosa_roxburghii	Rroxscaffold_5G00361420
rosa_rugosa	Rorug04G0151200
rosa_samantha	Rh4AG212900 Rh4BG217800 Rh4CG224600 Rh4DG211400
rosa_wichuraiana	Rw4G018080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	529
AccB1I	GGYRCC	1 cut(s)	898
AccI	GTMKAC	1 cut(s)	119
AccIII	TCCGGA	1 cut(s)	658
AciI	CCGC	1 cut(s)	192
AclWI	GGATC	3 cut(s)	297, 341, 421
AcoI	YGGCCR	2 cut(s)	378, 625
AcsI	RAATTY	6 cut(s)	141, 546, 640, 653, 738, 1005
AfaI	GTAC	2 cut(s)	165, 713
AfeI	AGCGCT	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	5 cut(s)	727, 770, 1031, 1078, 1084
AjnI	CCWGG	1 cut(s)	285
AjuI	GAANNNNNNNTTGG	2 cut(s)	560, 592
AleI	CACNNNNGTG	1 cut(s)	341
AluBI	AGCT	5 cut(s)	175, 564, 787, 822, 848
AluI	AGCT	5 cut(s)	175, 564, 787, 822, 848
Alw21I	GWGCWC	2 cut(s)	463, 824
Alw26I	GTCTC	2 cut(s)	95, 762
Alw44I	GTGCAC	1 cut(s)	459
AlwI	GGATC	3 cut(s)	297, 341, 421
Aor13HI	TCCGGA	1 cut(s)	658
Aor51HI	AGCGCT	1 cut(s)	251
AoxI	GGCC	4 cut(s)	378, 511, 537, 625
ApaLI	GTGCAC	1 cut(s)	459
ApeKI	GCWGC	3 cut(s)	269, 860, 979
ApoI	RAATTY	6 cut(s)	141, 546, 640, 653, 738, 1005
AspLEI	GCGC	2 cut(s)	252, 497
AspS9I	GGNCC	2 cut(s)	194, 950
AsuHPI	GGTGA	4 cut(s)	137, 328, 418, 693
AsuII	TTCGAA	1 cut(s)	638
AvaII	GGWCC	2 cut(s)	194, 950
BaeGI	GKGCMC	1 cut(s)	463
BanI	GGYRCC	1 cut(s)	898
BanII	GRGCYC	1 cut(s)	824
BbsI	GAAGAC	3 cut(s)	219, 375, 1091
Bbv12I	GWGCWC	2 cut(s)	463, 824
BbvI	GCAGC	3 cut(s)	281, 847, 966
BccI	CCATC	5 cut(s)	392, 929, 1018, 1061, 1087
BceAI	ACGGC	5 cut(s)	219, 365, 496, 640, 1027
BcgI	CGANNNNNNTGC	2 cut(s)	928, 962
BciT130I	CCWGG	1 cut(s)	287
BciVI	GTATCC	1 cut(s)	1114
BclI	TGATCA	1 cut(s)	385
BcoDI	GTCTC	2 cut(s)	95, 762
BfaI	CTAG	5 cut(s)	231, 365, 882, 1152, 1157
BfmI	CTRYAG	1 cut(s)	980
BfoI	RGCGCY	1 cut(s)	253
BfuI	GTATCC	1 cut(s)	1114
BisI	GCNGC	3 cut(s)	270, 861, 980
BlpI	GCTNAGC	1 cut(s)	788
BlsI	GCNGC	3 cut(s)	271, 862, 981
Bme1390I	CCNGG	1 cut(s)	287
Bme18I	GGWCC	2 cut(s)	194, 950
BmgT120I	GGNCC	2 cut(s)	194, 950
BmiI	GGNNCC	1 cut(s)	900
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	2 cut(s)	227, 492
BpiI	GAAGAC	3 cut(s)	219, 375, 1091
BpmI	CTGGAG	1 cut(s)	110
Bpu1102I	GCTNAGC	1 cut(s)	788
Bpu14I	TTCGAA	1 cut(s)	638
BpuEI	CTTGAG	1 cut(s)	45
Bsa29I	ATCGAT	1 cut(s)	969
BsaBI	GATNNNNATC	1 cut(s)	418
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	3 cut(s)	148, 285, 514
BsaWI	WCCGGW	1 cut(s)	658
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse118I	RCCGGY	1 cut(s)	961
Bse1I	ACTGG	2 cut(s)	127, 259
Bse3DI	GCAATG	2 cut(s)	870, 917
Bse8I	GATNNNNATC	1 cut(s)	418
BseAI	TCCGGA	1 cut(s)	658
BseBI	CCWGG	1 cut(s)	287
BseCI	ATCGAT	1 cut(s)	969
BseDI	CCNNGG	3 cut(s)	148, 285, 514
BseGI	GGATG	1 cut(s)	1072
BseJI	GATNNNNATC	1 cut(s)	418
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMI	GCAATG	2 cut(s)	870, 917
BseMII	CTCAG	3 cut(s)	260, 574, 1173
BseNI	ACTGG	2 cut(s)	127, 259
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	3 cut(s)	281, 847, 966
BshFI	GGCC	4 cut(s)	380, 513, 539, 627
BshNI	GGYRCC	1 cut(s)	898
BshVI	ATCGAT	1 cut(s)	969
BsiHKAI	GWGCWC	2 cut(s)	463, 824
BsiSI	CCGG	2 cut(s)	659, 962
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmAI	GTCTC	2 cut(s)	95, 762
BsnI	GGCC	4 cut(s)	380, 513, 539, 627
Bso31I	GGTCTC	1 cut(s)	95
Bsp119I	TTCGAA	1 cut(s)	638
Bsp1286I	GDGCHC	2 cut(s)	463, 824
Bsp13I	TCCGGA	1 cut(s)	658
Bsp143I	GATC	6 cut(s)	184, 289, 333, 385, 413, 970
Bsp1720I	GCTNAGC	1 cut(s)	788
Bsp19I	CCATGG	1 cut(s)	148
BspACI	CCGC	1 cut(s)	192
BspANI	GGCC	4 cut(s)	380, 513, 539, 627
BspCNI	CTCAG	3 cut(s)	259, 573, 1174
BspDI	ATCGAT	1 cut(s)	969
BspEI	TCCGGA	1 cut(s)	658
BspLI	GGNNCC	1 cut(s)	900
BspMAI	CTGCAG	1 cut(s)	984
BspPI	GGATC	3 cut(s)	297, 341, 421
BspT104I	TTCGAA	1 cut(s)	638
BspT107I	GGYRCC	1 cut(s)	898
BspTNI	GGTCTC	1 cut(s)	95
BsrDI	GCAATG	2 cut(s)	870, 917
BsrFI	RCCGGY	1 cut(s)	961
BsrI	ACTGG	2 cut(s)	127, 259
BssAI	RCCGGY	1 cut(s)	961
BssECI	CCNNGG	3 cut(s)	148, 285, 514
BssMI	GATC	6 cut(s)	184, 289, 333, 385, 413, 970
BssT1I	CCWWGG	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	4 cut(s)	215, 433, 605, 635
Bst6I	CTCTTC	1 cut(s)	37
BstBI	TTCGAA	1 cut(s)	638
BstC8I	GCNNGC	1 cut(s)	858
BstDEI	CTNAG	4 cut(s)	246, 560, 788, 1182
BstDSI	CCRYGG	1 cut(s)	148
BstF5I	GGATG	1 cut(s)	1072
BstH2I	RGCGCY	1 cut(s)	253
BstHHI	GCGC	2 cut(s)	252, 497
BstKTI	GATC	6 cut(s)	187, 292, 336, 388, 416, 973
BstMAI	GTCTC	2 cut(s)	95, 762
BstMBI	GATC	6 cut(s)	184, 289, 333, 385, 413, 970
BstMWI	GCNNNNNNNGC	1 cut(s)	494
BstNI	CCWGG	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	285
BstSFI	CTRYAG	1 cut(s)	980
BstSLI	GKGCMC	1 cut(s)	463
BstV1I	GCAGC	3 cut(s)	281, 847, 966
BstV2I	GAAGAC	3 cut(s)	219, 375, 1091
BstXI	CCANNNNNNTGG	2 cut(s)	86, 204
Bsu15I	ATCGAT	1 cut(s)	969
BsuI	GTATCC	1 cut(s)	1114
BsuRI	GGCC	4 cut(s)	380, 513, 539, 627
BsuTUI	ATCGAT	1 cut(s)	969
BtgI	CCRYGG	1 cut(s)	148
BtgZI	GCGATG	1 cut(s)	469
BtsCI	GGATG	1 cut(s)	1072
BtsIMutI	CAGTG	1 cut(s)	266
Cac8I	GCNNGC	1 cut(s)	858
CfoI	GCGC	2 cut(s)	252, 497
Cfr10I	RCCGGY	1 cut(s)	961
Cfr13I	GGNCC	2 cut(s)	194, 950
ClaI	ATCGAT	1 cut(s)	969
Csp6I	GTAC	2 cut(s)	164, 712
CspCI	CAANNNNNGTGG	2 cut(s)	157, 192
CviAII	CATG	7 cut(s)	101, 149, 376, 466, 707, 877, 1215
CviQI	GTAC	2 cut(s)	164, 712
DdeI	CTNAG	4 cut(s)	246, 560, 788, 1182
DpnI	GATC	6 cut(s)	186, 291, 335, 387, 415, 972
DpnII	GATC	6 cut(s)	184, 289, 333, 385, 413, 970
DraI	TTTAAA	1 cut(s)	1207
DrdI	GACNNNNNNGTC	1 cut(s)	529
DseDI	GACNNNNNNGTC	1 cut(s)	529
EaeI	YGGCCR	2 cut(s)	378, 625
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Ecl136II	GAGCTC	1 cut(s)	822
Eco130I	CCWWGG	1 cut(s)	148
Eco147I	AGGCCT	1 cut(s)	513
Eco24I	GRGCYC	1 cut(s)	824
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	2 cut(s)	194, 950
Eco47III	AGCGCT	1 cut(s)	251
Eco53kI	GAGCTC	1 cut(s)	822
EcoICRI	GAGCTC	1 cut(s)	822
EcoRI	GAATTC	1 cut(s)	1005
EcoRII	CCWGG	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	824
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	7 cut(s)	104, 152, 379, 469, 710, 880, 1218
FatI	CATG	7 cut(s)	100, 148, 375, 465, 706, 876, 1214
FbaI	TGATCA	1 cut(s)	385
FblI	GTMKAC	1 cut(s)	119
Fnu4HI	GCNGC	3 cut(s)	270, 861, 980
FokI	GGATG	1 cut(s)	1079
FriOI	GRGCYC	1 cut(s)	824
Fsp4HI	GCNGC	3 cut(s)	270, 861, 980
FspBI	CTAG	5 cut(s)	231, 365, 882, 1152, 1157
GlaI	GCGC	2 cut(s)	251, 496
GluI	GCNGC	3 cut(s)	270, 861, 980
GsuI	CTGGAG	1 cut(s)	110
HaeII	RGCGCY	1 cut(s)	253
HaeIII	GGCC	4 cut(s)	380, 513, 539, 627
HapII	CCGG	2 cut(s)	659, 962
HhaI	GCGC	2 cut(s)	252, 497
Hin1II	CATG	7 cut(s)	104, 152, 379, 469, 710, 880, 1218
Hin6I	GCGC	2 cut(s)	250, 495
HinP1I	GCGC	2 cut(s)	250, 495
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HindIII	AAGCTT	2 cut(s)	173, 846
HinfI	GANTC	4 cut(s)	523, 662, 698, 1196
HpaI	GTTAAC	1 cut(s)	688
HpaII	CCGG	2 cut(s)	659, 962
HphI	GGTGA	4 cut(s)	137, 328, 418, 693
Hpy166II	GTNNAC	4 cut(s)	120, 461, 688, 923
Hpy188I	TCNGA	3 cut(s)	240, 518, 1183
Hpy188III	TCNNGA	3 cut(s)	659, 761, 924
Hpy8I	GTNNAC	4 cut(s)	120, 461, 688, 923
HpyAV	CCTTC	4 cut(s)	32, 513, 767, 1136
HpyCH4III	ACNGT	4 cut(s)	215, 433, 605, 635
HpyCH4IV	ACGT	1 cut(s)	941
HpyCH4V	TGCA	6 cut(s)	16, 218, 269, 461, 863, 982
HpyF10VI	GCNNNNNNNGC	1 cut(s)	494
HpyF3I	CTNAG	4 cut(s)	246, 560, 788, 1182
HpySE526I	ACGT	1 cut(s)	941
Hsp92II	CATG	7 cut(s)	104, 152, 379, 469, 710, 880, 1218
HspAI	GCGC	2 cut(s)	250, 495
Kpn2I	TCCGGA	1 cut(s)	658
Ksp22I	TGATCA	1 cut(s)	385
KspAI	GTTAAC	1 cut(s)	688
Kzo9I	GATC	6 cut(s)	184, 289, 333, 385, 413, 970
LmnI	GCTCC	1 cut(s)	569
Lsp1109I	GCAGC	3 cut(s)	281, 847, 966
LweI	GCATC	2 cut(s)	227, 492
MaeI	CTAG	5 cut(s)	231, 365, 882, 1152, 1157
MaeII	ACGT	1 cut(s)	941
MaeIII	GTNAC	4 cut(s)	133, 391, 437, 699
MalI	GATC	6 cut(s)	186, 291, 335, 387, 415, 972
MboI	GATC	6 cut(s)	184, 289, 333, 385, 413, 970
MboII	GAAGA	8 cut(s)	24, 219, 380, 585, 760, 782, 790, 1096
MfeI	CAATTG	2 cut(s)	795, 1112
MhlI	GDGCHC	2 cut(s)	463, 824
MlyI	GAGTC	4 cut(s)	517, 656, 707, 1190
MnlI	CCTC	4 cut(s)	524, 550, 1064, 1111
MroI	TCCGGA	1 cut(s)	658
MseI	TTAA	5 cut(s)	476, 687, 735, 783, 1206
MslI	CAYNNNNRTG	3 cut(s)	341, 812, 1137
MspI	CCGG	2 cut(s)	659, 962
MspR9I	CCNGG	1 cut(s)	287
MssI	GTTTAAAC	1 cut(s)	1207
MunI	CAATTG	2 cut(s)	795, 1112
MvaI	CCWGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	1 cut(s)	494
NcoI	CCATGG	1 cut(s)	148
NdeII	GATC	6 cut(s)	184, 289, 333, 385, 413, 970
NlaIII	CATG	7 cut(s)	104, 152, 379, 469, 710, 880, 1218
NlaIV	GGNNCC	1 cut(s)	900
NmeAIII	GCCGAG	1 cut(s)	168
NmuCI	GTSAC	3 cut(s)	133, 391, 699
NspV	TTCGAA	1 cut(s)	638
OliI	CACNNNNGTG	1 cut(s)	341
PceI	AGGCCT	1 cut(s)	513
PcsI	WCGNNNNNNNCGW	1 cut(s)	615
PkrI	GCNGC	3 cut(s)	271, 862, 981
PleI	GAGTC	4 cut(s)	517, 656, 706, 1190
PmeI	GTTTAAAC	1 cut(s)	1207
PpsI	GAGTC	4 cut(s)	517, 656, 706, 1190
Psp124BI	GAGCTC	1 cut(s)	824
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	900
PspPI	GGNCC	2 cut(s)	194, 950
PstI	CTGCAG	1 cut(s)	984
RsaI	GTAC	2 cut(s)	165, 713
RsaNI	GTAC	2 cut(s)	164, 712
RseI	CAYNNNNRTG	3 cut(s)	341, 812, 1137
SacI	GAGCTC	1 cut(s)	824
SaqAI	TTAA	5 cut(s)	476, 687, 735, 783, 1206
SatI	GCNGC	3 cut(s)	270, 861, 980
Sau3AI	GATC	6 cut(s)	184, 289, 333, 385, 413, 970
Sau96I	GGNCC	2 cut(s)	194, 950
SchI	GAGTC	4 cut(s)	517, 656, 707, 1190
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	2 cut(s)	463, 824
SetI	ASST	8 cut(s)	177, 566, 789, 824, 850, 944, 1075, 1147
SfaNI	GCATC	2 cut(s)	227, 492
SfcI	CTRYAG	1 cut(s)	980
SfuI	TTCGAA	1 cut(s)	638
SinI	GGWCC	2 cut(s)	194, 950
SmiMI	CAYNNNNRTG	3 cut(s)	341, 812, 1137
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
SseBI	AGGCCT	1 cut(s)	513
SsiI	CCGC	1 cut(s)	192
SspMI	CTAG	5 cut(s)	231, 365, 882, 1152, 1157
SstI	GAGCTC	1 cut(s)	824
StuI	AGGCCT	1 cut(s)	513
StyD4I	CCNGG	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	4 cut(s)	215, 433, 605, 635
TaiI	ACGT	1 cut(s)	944
TaqI	TCGA	5 cut(s)	638, 650, 969, 1022, 1091
TaqII	GACCGA	2 cut(s)	152, 938
TatI	WGTACW	1 cut(s)	711
Tru1I	TTAA	5 cut(s)	476, 687, 735, 783, 1206
Tru9I	TTAA	5 cut(s)	476, 687, 735, 783, 1206
TscAI	CASTG	1 cut(s)	266
TseFI	GTSAC	3 cut(s)	133, 391, 699
TseI	GCWGC	3 cut(s)	269, 860, 979
Tsp45I	GTSAC	3 cut(s)	133, 391, 699
TspDTI	ATGAA	4 cut(s)	24, 568, 585, 887
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	1 cut(s)	266
VneI	GTGCAC	1 cut(s)	459
VpaK11BI	GGWCC	2 cut(s)	194, 950
XapI	RAATTY	6 cut(s)	141, 546, 640, 653, 738, 1005
XmiI	GTMKAC	1 cut(s)	119
XspI	CTAG	5 cut(s)	231, 365, 882, 1152, 1157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.