Rh4DG211400

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
40655340 .. 40656903
1564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG211400.1

Sequence Viewer

Length: 1239 bp
ATGGCTGCTTTTCTGCACTTCCTTCTTCTTCTCTGCTCTTTTGCCTACAACTTCAACACATCTCAATCCAAACATACTCACCCACAACAAAAAGGTGCCATCTTTCACGTCACCAAAGATCTATCAACCCTCCAGTACGTGACCCAGATCCACCACGGCACTCCTCTTCAACCCACCAACCTCGTAATCGATCTCGGCGGCCCTTTCCTCTGGCTCGGCTGCGCTTCCGATTCCGGGTCTTCATCTTCTAGAACTCTCATCTCTCACAGCTCAATCAAGTGCTTATCAGCCAACCCCAACACCCAAAAAAGCAAGTCCAGCAAGTGTGAGACTTTCCCACAAAACAGAATCACCCAAATGGCCACACAAGGAGATTTGGCAGAAGACATCATAGCCCTTCCGTTCGTTGATGTGTCCAAAACCACCGTTGATTCCCTTTTCTTATTTTCTTGTGCACCCAAATTGCTTCTGAAAGGCCTAGCATCTGGGGCTAGAGGAATGTTAGGACTCGGAAGGAGTCGAGTTTCGGTGGCGTCGCAAATTGCTGCAGCATTTGGTTCCAAACCGCAGTTCATCCTCTGCCTGTCTTCATCAAACGGGGTCGTTTTACACGACAGTGGGGAATATGGTTCTTATTTTGTCTCTGGAGTTTCAGGCTCACTCACACACACACCCCTGGTTACCAAAGTCGACTCACCACATGAGTATTTCATCAACCAGAAGTCAATCAGAGTCAACGGGAAGCAATTGTCTCTGAATTACAAAGAGGGTCTTGGAGGGATTAAGCTAAGCACAGTTGTTCCCTACTCTACTATGGAGAGCTCAGTCTATGCTGTATTTGTCAAAGCTTATGAGCAAGCTGCTGTGGCTATGAACATGACTAGGGTGGCTTCTGTGGCACCATTTGGACTGTGTTTTGGTTCCAAAAACATCGATGGCATTCGGGTTGGTTCAAGAGCGCCTGTTGTTGATTTGGGGCTGCAGAGTGAGATGGTGAAGTGGAGAATTCATGGTAGAAACTCCATGGTTCAAGTGAGCGATGAAGTTATGTGTTTGGGGTTCTTGGATGGTGGTTTGGAGCAGAAGACTTCAATTGTGTTAGGGGGTCATCAATTGGAGGATACCCTGTTATATTTTGATTTGGGTGCTTCTATGCTAGGATTTAGTTCTTCCACGTTGATGGATCAGAATACTTGCTCTGATCTGGGACTGGGTTTTGGGTTTAAAGATTCAATGTAA

Protein Analysis

412

Amino Acids

44.24

Weight (kDa)

8.3

Isoelectric Point (pI)

32.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 45 - 389 3.4e-07 Eukaryotic aspartyl protease
TAXi_N PF14543 46 - 200 3.2e-33 Xylanase inhibitor N-terminal
TAXi_C PF14541 235 - 389 2.6e-47 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19120
fragaria_vesca FvH4_4g14600
malus_domestica MD16G1185400.v1.1
prunus_persica Prupe.1G152000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0418211
rosa_laevigata RLG00000007885
rosa_roxburghii Rroxscaffold_5G00361420
rosa_rugosa Rorug04G0151200
rosa_samantha Rh4AG212900 Rh4BG217800 Rh4CG224600 Rh4DG211400
rosa_wichuraiana Rw4G018080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 95, 898
AccI GTMKAC 1 cut(s) 690
AciI CCGC 2 cut(s) 198, 566
AclWI GGATC 2 cut(s) 142, 1191
AcoI YGGCCR 1 cut(s) 360
AcsI RAATTY 1 cut(s) 1005
AcyI GRCGYC 1 cut(s) 533
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 234
AgsI TTSAA 6 cut(s) 55, 170, 954, 1031, 1092, 1233
AjiI CACGTC 1 cut(s) 109
AjnI CCWGG 1 cut(s) 675
AjuI GAANNNNNNNTTGG 2 cut(s) 554, 586
AleI CACNNNNGTG 1 cut(s) 615
AluBI AGCT 5 cut(s) 270, 787, 822, 848, 860
AluI AGCT 5 cut(s) 270, 787, 822, 848, 860
Alw21I GWGCWC 2 cut(s) 457, 824
Alw26I GTCTC 3 cut(s) 323, 646, 756
Alw44I GTGCAC 1 cut(s) 453
AlwI GGATC 2 cut(s) 142, 1191
AoxI GGCC 3 cut(s) 199, 360, 475
ApaLI GTGCAC 1 cut(s) 453
ApeKI GCWGC 6 cut(s) 5, 219, 545, 548, 860, 979
ApoI RAATTY 1 cut(s) 1005
AspLEI GCGC 2 cut(s) 224, 961
AspS9I GGNCC 1 cut(s) 200
AsuC2I CCSGG 1 cut(s) 235
AsuHPI GGTGA 5 cut(s) 71, 103, 343, 687, 1006
BaeGI GKGCMC 1 cut(s) 457
BalI TGGCCA 1 cut(s) 362
BanI GGYRCC 2 cut(s) 95, 898
BanII GRGCYC 1 cut(s) 824
BbsI GAAGAC 4 cut(s) 231, 390, 579, 1091
Bbv12I GWGCWC 2 cut(s) 457, 824
BbvI GCAGC 5 cut(s) 206, 532, 560, 847, 966
BccI CCATC 5 cut(s) 107, 929, 985, 1061, 1174
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 677
BciVI GTATCC 1 cut(s) 1114
BcnI CCSGG 1 cut(s) 235
BcoDI GTCTC 3 cut(s) 323, 646, 756
BfaI CTAG 5 cut(s) 249, 479, 492, 882, 1157
BfmI CTRYAG 2 cut(s) 546, 980
BfoI RGCGCY 1 cut(s) 962
BfuI GTATCC 1 cut(s) 1114
BglII AGATCT 1 cut(s) 118
BisI GCNGC 7 cut(s) 6, 199, 220, 546, 549, 861, 980
BlpI GCTNAGC 1 cut(s) 788
BlsI GCNGC 7 cut(s) 7, 200, 221, 547, 550, 862, 981
Bme1390I CCNGG 2 cut(s) 235, 677
BmgBI CACGTC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 4 cut(s) 97, 559, 900, 922
BmrFI CCNGG 2 cut(s) 235, 677
BmrI ACTGGG 1 cut(s) 1220
BmsI GCATC 1 cut(s) 491
BmuI ACTGGG 1 cut(s) 1220
BpiI GAAGAC 4 cut(s) 231, 390, 579, 1091
BpmI CTGGAG 2 cut(s) 116, 666
Bpu1102I GCTNAGC 1 cut(s) 788
BpuMI CCSGG 1 cut(s) 235
Bsa29I ATCGAT 2 cut(s) 189, 933
BsaAI YACGTR 1 cut(s) 139
BsaHI GRCGYC 1 cut(s) 533
BsaJI CCNNGG 3 cut(s) 154, 675, 1023
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse1I ACTGG 2 cut(s) 133, 1215
BseBI CCWGG 1 cut(s) 677
BseCI ATCGAT 2 cut(s) 189, 933
BseDI CCNNGG 3 cut(s) 154, 675, 1023
BseGI GGATG 2 cut(s) 573, 1072
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMII CTCAG 1 cut(s) 837
BseNI ACTGG 2 cut(s) 133, 1215
BseRI GAGGAG 1 cut(s) 153
BseSI GKGCMC 1 cut(s) 457
BseXI GCAGC 5 cut(s) 206, 532, 560, 847, 966
BshFI GGCC 3 cut(s) 201, 362, 477
BshNI GGYRCC 2 cut(s) 95, 898
BshVI ATCGAT 2 cut(s) 189, 933
BsiHKAI GWGCWC 2 cut(s) 457, 824
BsiSI CCGG 1 cut(s) 234
BslFI GGGAC 1 cut(s) 1221
BslI CCNNNNNNNGG 1 cut(s) 234
BsmAI GTCTC 3 cut(s) 323, 646, 756
BsmFI GGGAC 1 cut(s) 1221
BsmI GAATGC 1 cut(s) 939
BsnI GGCC 3 cut(s) 201, 362, 477
Bsp1286I GDGCHC 2 cut(s) 457, 824
Bsp143I GATC 5 cut(s) 118, 147, 190, 1183, 1201
Bsp1720I GCTNAGC 1 cut(s) 788
Bsp19I CCATGG 1 cut(s) 1023
BspACI CCGC 2 cut(s) 198, 566
BspANI GGCC 3 cut(s) 201, 362, 477
BspCNI CTCAG 1 cut(s) 836
BspDI ATCGAT 2 cut(s) 189, 933
BspLI GGNNCC 4 cut(s) 97, 559, 900, 922
BspMAI CTGCAG 2 cut(s) 550, 984
BspPI GGATC 2 cut(s) 142, 1191
BspT107I GGYRCC 2 cut(s) 95, 898
BsrI ACTGG 2 cut(s) 133, 1215
BssECI CCNNGG 3 cut(s) 154, 675, 1023
BssMI GATC 5 cut(s) 118, 147, 190, 1183, 1201
BssNI GRCGYC 1 cut(s) 533
BssT1I CCWWGG 1 cut(s) 1023
Bst2UI CCWGG 1 cut(s) 677
Bst4CI ACNGT 4 cut(s) 427, 617, 796, 912
Bst6I CTCTTC 1 cut(s) 171
BstACI GRCGYC 1 cut(s) 533
BstBAI YACGTR 1 cut(s) 139
BstC8I GCNNGC 1 cut(s) 858
BstDEI CTNAG 2 cut(s) 788, 823
BstDSI CCRYGG 2 cut(s) 154, 1023
BstEII GGTNACC 1 cut(s) 679
BstF5I GGATG 2 cut(s) 573, 1072
BstH2I RGCGCY 1 cut(s) 962
BstHHI GCGC 2 cut(s) 224, 961
BstKTI GATC 5 cut(s) 121, 150, 193, 1186, 1204
BstMAI GTCTC 3 cut(s) 323, 646, 756
BstMBI GATC 5 cut(s) 118, 147, 190, 1183, 1201
BstMWI GCNNNNNNNGC 4 cut(s) 318, 488, 866, 896
BstNI CCWGG 1 cut(s) 677
BstPI GGTNACC 1 cut(s) 679
BstSCI CCNGG 2 cut(s) 233, 675
BstSFI CTRYAG 2 cut(s) 546, 980
BstSLI GKGCMC 1 cut(s) 457
BstV1I GCAGC 5 cut(s) 206, 532, 560, 847, 966
BstV2I GAAGAC 4 cut(s) 231, 390, 579, 1091
BstX2I RGATCY 2 cut(s) 118, 147
BstXI CCANNNNNNTGG 1 cut(s) 1180
BstYI RGATCY 2 cut(s) 118, 147
Bsu15I ATCGAT 2 cut(s) 189, 933
BsuI GTATCC 1 cut(s) 1114
BsuRI GGCC 3 cut(s) 201, 362, 477
BsuTUI ATCGAT 2 cut(s) 189, 933
BtgI CCRYGG 2 cut(s) 154, 1023
BtgZI GCGATG 1 cut(s) 1053
BtrI CACGTC 1 cut(s) 109
BtsCI GGATG 2 cut(s) 573, 1072
BtsIMutI CAGTG 1 cut(s) 622
Cac8I GCNNGC 1 cut(s) 858
CfoI GCGC 2 cut(s) 224, 961
Cfr13I GGNCC 1 cut(s) 200
ClaI ATCGAT 2 cut(s) 189, 933
CseI GACGC 1 cut(s) 522
Csp6I GTAC 1 cut(s) 136
CviAII CATG 4 cut(s) 701, 877, 1010, 1024
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 2 cut(s) 788, 823
DpnI GATC 5 cut(s) 120, 149, 192, 1185, 1203
DpnII GATC 5 cut(s) 118, 147, 190, 1183, 1201
DraI TTTAAA 1 cut(s) 1225
EaeI YGGCCR 1 cut(s) 360
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Ecl136II GAGCTC 1 cut(s) 822
Eco130I CCWWGG 1 cut(s) 1023
Eco147I AGGCCT 1 cut(s) 477
Eco24I GRGCYC 1 cut(s) 824
Eco53kI GAGCTC 1 cut(s) 822
Eco91I GGTNACC 1 cut(s) 679
EcoICRI GAGCTC 1 cut(s) 822
EcoO65I GGTNACC 1 cut(s) 679
EcoRI GAATTC 1 cut(s) 1005
EcoRII CCWGG 1 cut(s) 675
EcoT14I CCWWGG 1 cut(s) 1023
EcoT38I GRGCYC 1 cut(s) 824
ErhI CCWWGG 1 cut(s) 1023
FaeI CATG 4 cut(s) 704, 880, 1013, 1027
FalI AAGNNNNNCTT 2 cut(s) 756, 788
FaqI GGGAC 1 cut(s) 1221
FatI CATG 4 cut(s) 700, 876, 1009, 1023
FblI GTMKAC 1 cut(s) 690
Fnu4HI GCNGC 7 cut(s) 6, 199, 220, 546, 549, 861, 980
FokI GGATG 2 cut(s) 560, 1079
FriOI GRGCYC 1 cut(s) 824
Fsp4HI GCNGC 7 cut(s) 6, 199, 220, 546, 549, 861, 980
FspBI CTAG 5 cut(s) 249, 479, 492, 882, 1157
GlaI GCGC 2 cut(s) 223, 960
GluI GCNGC 7 cut(s) 6, 199, 220, 546, 549, 861, 980
GsuI CTGGAG 2 cut(s) 116, 666
HaeII RGCGCY 1 cut(s) 962
HaeIII GGCC 3 cut(s) 201, 362, 477
HapII CCGG 1 cut(s) 234
HgaI GACGC 1 cut(s) 522
HhaI GCGC 2 cut(s) 224, 961
Hin1I GRCGYC 1 cut(s) 533
Hin1II CATG 4 cut(s) 704, 880, 1013, 1027
Hin6I GCGC 2 cut(s) 222, 959
HinP1I GCGC 2 cut(s) 222, 959
HincII GTYRAC 2 cut(s) 691, 736
HindII GTYRAC 2 cut(s) 691, 736
HindIII AAGCTT 1 cut(s) 846
HinfI GANTC 8 cut(s) 230, 348, 431, 507, 517, 692, 732, 1229
HpaII CCGG 1 cut(s) 234
HphI GGTGA 5 cut(s) 71, 103, 343, 687, 1006
Hpy166II GTNNAC 3 cut(s) 455, 691, 736
Hpy188I TCNGA 7 cut(s) 229, 471, 512, 731, 756, 1188, 1201
Hpy188III TCNNGA 3 cut(s) 249, 645, 954
Hpy8I GTNNAC 3 cut(s) 455, 691, 736
Hpy99I CGWCG 1 cut(s) 538
HpyAV CCTTC 3 cut(s) 32, 407, 507
HpyCH4III ACNGT 4 cut(s) 427, 617, 796, 912
HpyCH4IV ACGT 3 cut(s) 108, 138, 1175
HpyCH4V TGCA 4 cut(s) 16, 455, 548, 982
HpyF10VI GCNNNNNNNGC 4 cut(s) 318, 488, 866, 896
HpyF3I CTNAG 2 cut(s) 788, 823
HpySE526I ACGT 3 cut(s) 108, 138, 1175
Hsp92I GRCGYC 1 cut(s) 533
Hsp92II CATG 4 cut(s) 704, 880, 1013, 1027
HspAI GCGC 2 cut(s) 222, 959
Kzo9I GATC 5 cut(s) 118, 147, 190, 1183, 1201
LmnI GCTCC 1 cut(s) 1078
Lsp1109I GCAGC 5 cut(s) 206, 532, 560, 847, 966
LweI GCATC 1 cut(s) 491
MaeI CTAG 5 cut(s) 249, 479, 492, 882, 1157
MaeII ACGT 3 cut(s) 108, 138, 1175
MaeIII GTNAC 3 cut(s) 109, 139, 679
MalI GATC 5 cut(s) 120, 149, 192, 1185, 1203
MboI GATC 5 cut(s) 118, 147, 190, 1183, 1201
MboII GAAGA 9 cut(s) 17, 20, 158, 231, 237, 395, 579, 1096, 1161
MfeI CAATTG 3 cut(s) 746, 1092, 1112
MflI RGATCY 2 cut(s) 118, 147
MhlI GDGCHC 2 cut(s) 457, 824
MlsI TGGCCA 1 cut(s) 362
MluCI AATT 7 cut(s) 461, 540, 746, 757, 1005, 1092, 1112
MluNI TGGCCA 1 cut(s) 362
MlyI GAGTC 4 cut(s) 501, 526, 686, 741
MnlI CCTC 9 cut(s) 140, 174, 191, 218, 488, 587, 760, 770, 1111
Mox20I TGGCCA 1 cut(s) 362
MscI TGGCCA 1 cut(s) 362
MseI TTAA 2 cut(s) 783, 1224
MslI CAYNNNNRTG 3 cut(s) 356, 615, 1178
Msp20I TGGCCA 1 cut(s) 362
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 2 cut(s) 235, 677
MunI CAATTG 3 cut(s) 746, 1092, 1112
Mva1269I GAATGC 1 cut(s) 939
MvaI CCWGG 1 cut(s) 677
MwoI GCNNNNNNNGC 4 cut(s) 318, 488, 866, 896
NciI CCSGG 1 cut(s) 235
NcoI CCATGG 1 cut(s) 1023
NdeII GATC 5 cut(s) 118, 147, 190, 1183, 1201
NlaIII CATG 4 cut(s) 704, 880, 1013, 1027
NlaIV GGNNCC 4 cut(s) 97, 559, 900, 922
NmeAIII GCCGAG 2 cut(s) 174, 195
NmuCI GTSAC 2 cut(s) 109, 139
OliI CACNNNNGTG 1 cut(s) 615
PceI AGGCCT 1 cut(s) 477
PcsI WCGNNNNNNNCGW 1 cut(s) 609
PctI GAATGC 1 cut(s) 939
PfeI GAWTC 4 cut(s) 230, 348, 431, 1229
PkrI GCNGC 7 cut(s) 7, 200, 221, 547, 550, 862, 981
PleI GAGTC 4 cut(s) 501, 525, 686, 740
PpsI GAGTC 4 cut(s) 501, 525, 686, 740
Ppu21I YACGTR 1 cut(s) 139
Psp124BI GAGCTC 1 cut(s) 824
Psp6I CCWGG 1 cut(s) 675
PspEI GGTNACC 1 cut(s) 679
PspGI CCWGG 1 cut(s) 675
PspN4I GGNNCC 4 cut(s) 97, 559, 900, 922
PspPI GGNCC 1 cut(s) 200
PstI CTGCAG 2 cut(s) 550, 984
PsuI RGATCY 2 cut(s) 118, 147
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
RseI CAYNNNNRTG 3 cut(s) 356, 615, 1178
SacI GAGCTC 1 cut(s) 824
SalI GTCGAC 1 cut(s) 689
SaqAI TTAA 2 cut(s) 783, 1224
SatI GCNGC 7 cut(s) 6, 199, 220, 546, 549, 861, 980
Sau3AI GATC 5 cut(s) 118, 147, 190, 1183, 1201
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 4 cut(s) 501, 526, 686, 741
ScrFI CCNGG 2 cut(s) 235, 677
SduI GDGCHC 2 cut(s) 457, 824
SfaNI GCATC 1 cut(s) 491
SfcI CTRYAG 2 cut(s) 546, 980
SmiMI CAYNNNNRTG 3 cut(s) 356, 615, 1178
Sse9I AATT 7 cut(s) 461, 540, 746, 757, 1005, 1092, 1112
SseBI AGGCCT 1 cut(s) 477
SsiI CCGC 2 cut(s) 198, 566
SspMI CTAG 5 cut(s) 249, 479, 492, 882, 1157
SstI GAGCTC 1 cut(s) 824
StuI AGGCCT 1 cut(s) 477
StyD4I CCNGG 2 cut(s) 233, 675
StyI CCWWGG 1 cut(s) 1023
TaaI ACNGT 4 cut(s) 427, 617, 796, 912
TaiI ACGT 3 cut(s) 111, 141, 1178
TaqI TCGA 4 cut(s) 189, 520, 690, 933
TasI AATT 7 cut(s) 461, 540, 746, 757, 1005, 1092, 1112
TauI GCSGC 1 cut(s) 201
TfiI GAWTC 4 cut(s) 230, 348, 431, 1229
Tru1I TTAA 2 cut(s) 783, 1224
Tru9I TTAA 2 cut(s) 783, 1224
TscAI CASTG 1 cut(s) 622
TseFI GTSAC 2 cut(s) 109, 139
TseI GCWGC 6 cut(s) 5, 219, 545, 548, 860, 979
Tsp45I GTSAC 2 cut(s) 109, 139
TspDTI ATGAA 7 cut(s) 231, 562, 579, 700, 887, 998, 1056
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 1 cut(s) 622
VneI GTGCAC 1 cut(s) 453
XapI RAATTY 1 cut(s) 1005
XbaI TCTAGA 1 cut(s) 248
XmiI GTMKAC 1 cut(s) 690
XspI CTAG 5 cut(s) 249, 479, 492, 882, 1157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.