Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0017142

Physical Location & Seq

Genomic Coordinates Forward (+)

12002056 .. 12004216

Gene Structure 2161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G152000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGCTGCTTCTCTGCATTTTTTCCATCTTCTTCTTTTGATCTCTTTCTTTTTGTGCAATCTCAACTTATCTCTAGCAAAACCCTCTCACCCACCAAAGGGTCTAATTTTTCATGTGACCAAGGATGTGTCAACCCTCCAGTATATGACCACAATTCATCATGGCACTCCACTTGTGCCCACCAAGCTTGTGGTTGATCTTGGCGGTCCGTTCCTTTGGCTCAACTGTGGGTCATCATCATCTTCTAGCCGTCTGATTGCTCAGGGCTCGATCCAATGCTTAGCAGCAAAGCCAAAAACCCATAATCAGGGAAGCAAGAACTACCTCTCTAGCAATGACAACAACAAGAAGTGTCATGTTTTCCCAGAAAACAGCATCACCCAGATGGCAACACAAGGGGAGTTAGTGCAAGACATTATGGCCATCCAAGTCATAGATGGGTCATCAAAGACAGAGTCAGGTTCAATCACCACCCTTGATTCCAATTTCCTGTTTTCTTGTGCACCTATGTTCCTTTTGAATGGCTTAGCAAGTGGTGCCAGAGGAATGTTAGGCCTTGGAAGGACTCAGATTTCAATGGCCTCACAAATCTCTGCCAAACTCAGCTCCAAATTGCAATTCATGCTCTGCCTATCTTCATCAAATGGGGTCATATTACACAACAATGGCCACTTTGGCTCTGAAATTTCAAACTCACTCACATACACATACACATACACACCCTTCCTCACCAACCAACAAGAGTATTTTATCAACTTGAAGTACATTAAAATCAGTGGCAAGAGATTATCTCTAAACAAAGAGGGTTTTAGAGAAGGGATTAAGCTAAGCACAACTGTTCCTTACACTACCATGGAGAGCTCAGTTTATGTTACATTTACCAGAGCTTATGAGCAGGCAGCTATGGCTATGAACATGACCAGAGTGGCTCCTGTGGCACCATTTGTGCTCTGTTTTAGTTCAGAACAGGCTGAGGGCAGAGGGGTTGGTCCAAAAGTGCCTGCTATTGATCTGGTGCTGCAGAGTGAGATGGTGAAGTGGAGAATTCATGGTAGAAATTCAATGGTTCAGGTGAGCAACCAAGTGATGTGCTTGGGGTTTTTGGATGGAGGTTCTGACTTGAAGACTTCCATTGTAATTGGAGGATATCAATTAGAGGATACTCTTCTGCATTTTGATTTGAGTGCTTCTGTGCTGGGATTTAGCAGTCAAACAAGTTGTTCTGACTTGAGATTAGATTTTGCGCTTAAAGATTCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005488 GO:0005515 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0042802 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

421

Amino Acids

45.8

Weight (kDa)

8.64

Isoelectric Point (pI)

34.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19120
fragaria_vesca	FvH4_4g14600
malus_domestica	MD16G1185400.v1.1
prunus_persica	Prupe.1G152000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0418211
rosa_laevigata	RLG00000007885
rosa_roxburghii	Rroxscaffold_5G00361420
rosa_rugosa	Rorug04G0151200
rosa_samantha	Rh4AG212900 Rh4BG217800 Rh4CG224600 Rh4DG211400
rosa_wichuraiana	Rw4G018080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	536, 937
AciI	CCGC	1 cut(s)	204
AclWI	GGATC	1 cut(s)	265
AcoI	YGGCCR	2 cut(s)	420, 667
AcsI	RAATTY	3 cut(s)	684, 1044, 1057
AfaI	GTAC	1 cut(s)	764
AfiI	CCNNNNNNNGG	3 cut(s)	97, 98, 307
AgsI	TTSAA	7 cut(s)	465, 520, 576, 690, 760, 1062, 1123
AjuI	GAANNNNNNNTTGG	2 cut(s)	602, 634
AluBI	AGCT	6 cut(s)	187, 606, 826, 861, 887, 902
AluI	AGCT	6 cut(s)	187, 606, 826, 861, 887, 902
Alw21I	GWGCWC	3 cut(s)	505, 863, 951
Alw44I	GTGCAC	1 cut(s)	501
AlwI	GGATC	1 cut(s)	265
AoxI	GGCC	4 cut(s)	420, 553, 579, 667
ApaLI	GTGCAC	1 cut(s)	501
ApeKI	GCWGC	4 cut(s)	5, 284, 899, 1018
ApoI	RAATTY	3 cut(s)	684, 1044, 1057
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
AspLEI	GCGC	1 cut(s)	1246
AspS9I	GGNCC	2 cut(s)	206, 989
AsuHPI	GGTGA	6 cut(s)	80, 370, 460, 721, 1045, 1084
AvaII	GGWCC	2 cut(s)	206, 989
BaeGI	GKGCMC	2 cut(s)	180, 505
BalI	TGGCCA	2 cut(s)	422, 669
BanI	GGYRCC	2 cut(s)	536, 937
BanII	GRGCYC	2 cut(s)	269, 863
BbsI	GAAGAC	1 cut(s)	1130
Bbv12I	GWGCWC	3 cut(s)	505, 863, 951
BbvCI	CCTCAGC	1 cut(s)	972
BbvI	GCAGC	3 cut(s)	296, 911, 1005
BccI	CCATC	6 cut(s)	33, 379, 431, 431, 1024, 1100
BceAI	ACGGC	1 cut(s)	234
BciVI	GTATCC	1 cut(s)	1153
BfaI	CTAG	3 cut(s)	74, 246, 330
BfmI	CTRYAG	1 cut(s)	1019
BfuI	GTATCC	1 cut(s)	1153
BglI	GCCNNNNNGGC	1 cut(s)	675
BisI	GCNGC	4 cut(s)	6, 285, 900, 1019
BlpI	GCTNAGC	3 cut(s)	280, 526, 827
BlsI	GCNGC	4 cut(s)	7, 286, 901, 1020
Bme18I	GGWCC	2 cut(s)	206, 989
BmgT120I	GGNCC	2 cut(s)	206, 989
BmiI	GGNNCC	3 cut(s)	538, 930, 939
BmsI	GCATC	1 cut(s)	384
BpiI	GAAGAC	1 cut(s)	1130
BplI	GAGNNNNNCTC	2 cut(s)	775, 807
BpmI	CTGGAG	1 cut(s)	122
Bpu10I	CCTNAGC	2 cut(s)	261, 972
Bpu1102I	GCTNAGC	3 cut(s)	280, 526, 827
BpuEI	CTTGAG	1 cut(s)	1249
BsaJI	CCNNGG	3 cut(s)	120, 556, 852
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 98, 307
Bse1I	ACTGG	1 cut(s)	139
Bse3DI	GCAATG	1 cut(s)	340
BseDI	CCNNGG	3 cut(s)	120, 556, 852
BseGI	GGATG	3 cut(s)	130, 423, 1111
BseLI	CCNNNNNNNGG	3 cut(s)	97, 98, 307
BseMI	GCAATG	1 cut(s)	340
BseMII	CTCAG	5 cut(s)	275, 581, 616, 876, 963
BseNI	ACTGG	1 cut(s)	139
BseSI	GKGCMC	2 cut(s)	180, 505
BseXI	GCAGC	3 cut(s)	296, 911, 1005
BseYI	CCCAGC	1 cut(s)	1195
BshFI	GGCC	4 cut(s)	422, 555, 581, 669
BshNI	GGYRCC	2 cut(s)	536, 937
BsiHKAI	GWGCWC	3 cut(s)	505, 863, 951
BslI	CCNNNNNNNGG	3 cut(s)	97, 98, 307
BsnI	GGCC	4 cut(s)	422, 555, 581, 669
Bsp1286I	GDGCHC	5 cut(s)	180, 269, 505, 863, 951
Bsp143I	GATC	4 cut(s)	39, 196, 270, 1009
Bsp1720I	GCTNAGC	3 cut(s)	280, 526, 827
Bsp19I	CCATGG	1 cut(s)	852
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	4 cut(s)	422, 555, 581, 669
BspCNI	CTCAG	5 cut(s)	274, 580, 615, 875, 964
BspLI	GGNNCC	3 cut(s)	538, 930, 939
BspMAI	CTGCAG	1 cut(s)	1023
BspPI	GGATC	1 cut(s)	265
BspT107I	GGYRCC	2 cut(s)	536, 937
BsrDI	GCAATG	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	139
BssECI	CCNNGG	3 cut(s)	120, 556, 852
BssMI	GATC	4 cut(s)	39, 196, 270, 1009
BssT1I	CCWWGG	3 cut(s)	120, 556, 852
Bst4CI	ACNGT	2 cut(s)	227, 838
Bst6I	CTCTTC	1 cut(s)	1170
BstAPI	GCANNNNNTGC	2 cut(s)	536, 622
BstC8I	GCNNGC	2 cut(s)	897, 1002
BstDEI	CTNAG	8 cut(s)	261, 280, 526, 567, 602, 827, 862, 972
BstDSI	CCRYGG	1 cut(s)	852
BstF5I	GGATG	3 cut(s)	130, 423, 1111
BstHHI	GCGC	1 cut(s)	1246
BstKTI	GATC	4 cut(s)	42, 199, 273, 1012
BstMBI	GATC	4 cut(s)	39, 196, 270, 1009
BstMWI	GCNNNNNNNGC	6 cut(s)	184, 536, 622, 675, 905, 935
BstSFI	CTRYAG	1 cut(s)	1019
BstSLI	GKGCMC	2 cut(s)	180, 505
BstV1I	GCAGC	3 cut(s)	296, 911, 1005
BstV2I	GAAGAC	1 cut(s)	1130
BstXI	CCANNNNNNTGG	1 cut(s)	190
BsuI	GTATCC	1 cut(s)	1153
BsuRI	GGCC	4 cut(s)	422, 555, 581, 669
BtgI	CCRYGG	1 cut(s)	852
BtsCI	GGATG	3 cut(s)	130, 423, 1111
BtsIMutI	CAGTG	1 cut(s)	781
Cac8I	GCNNGC	2 cut(s)	897, 1002
CfoI	GCGC	1 cut(s)	1246
Cfr13I	GGNCC	2 cut(s)	206, 989
CpoI	CGGWCCG	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	763
CspCI	CAANNNNNGTGG	2 cut(s)	169, 204
CspI	CGGWCCG	1 cut(s)	206
CviAII	CATG	7 cut(s)	113, 161, 356, 622, 853, 916, 1049
CviQI	GTAC	1 cut(s)	763
DdeI	CTNAG	8 cut(s)	261, 280, 526, 567, 602, 827, 862, 972
DpnI	GATC	4 cut(s)	41, 198, 272, 1011
DpnII	GATC	4 cut(s)	39, 196, 270, 1009
EaeI	YGGCCR	2 cut(s)	420, 667
Eam1104I	CTCTTC	1 cut(s)	1170
EarI	CTCTTC	1 cut(s)	1170
Ecl136II	GAGCTC	1 cut(s)	861
Eco130I	CCWWGG	3 cut(s)	120, 556, 852
Eco147I	AGGCCT	1 cut(s)	555
Eco24I	GRGCYC	2 cut(s)	269, 863
Eco32I	GATATC	1 cut(s)	1148
Eco47I	GGWCC	2 cut(s)	206, 989
Eco53kI	GAGCTC	1 cut(s)	861
EcoICRI	GAGCTC	1 cut(s)	861
EcoRI	GAATTC	1 cut(s)	1044
EcoRV	GATATC	1 cut(s)	1148
EcoT14I	CCWWGG	3 cut(s)	120, 556, 852
EcoT38I	GRGCYC	2 cut(s)	269, 863
ErhI	CCWWGG	3 cut(s)	120, 556, 852
FaeI	CATG	7 cut(s)	116, 164, 359, 625, 856, 919, 1052
FatI	CATG	7 cut(s)	112, 160, 355, 621, 852, 915, 1048
Fnu4HI	GCNGC	4 cut(s)	6, 285, 900, 1019
FokI	GGATG	3 cut(s)	137, 410, 1118
FriOI	GRGCYC	2 cut(s)	269, 863
Fsp4HI	GCNGC	4 cut(s)	6, 285, 900, 1019
FspBI	CTAG	3 cut(s)	74, 246, 330
GlaI	GCGC	1 cut(s)	1245
GluI	GCNGC	4 cut(s)	6, 285, 900, 1019
GsaI	CCCAGC	1 cut(s)	1199
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	4 cut(s)	422, 555, 581, 669
HhaI	GCGC	1 cut(s)	1246
Hin1II	CATG	7 cut(s)	116, 164, 359, 625, 856, 919, 1052
Hin6I	GCGC	1 cut(s)	1244
HinP1I	GCGC	1 cut(s)	1244
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	4 cut(s)	455, 479, 565, 1253
HphI	GGTGA	6 cut(s)	80, 370, 460, 721, 1045, 1084
Hpy166II	GTNNAC	2 cut(s)	132, 503
Hpy188I	TCNGA	6 cut(s)	255, 570, 682, 964, 1117, 1225
Hpy8I	GTNNAC	2 cut(s)	132, 503
HpyAV	CCTTC	3 cut(s)	555, 733, 809
HpyCH4III	ACNGT	2 cut(s)	227, 838
HpyCH4V	TGCA	7 cut(s)	16, 57, 409, 503, 616, 1021, 1171
HpyF10VI	GCNNNNNNNGC	6 cut(s)	184, 536, 622, 675, 905, 935
HpyF3I	CTNAG	8 cut(s)	261, 280, 526, 567, 602, 827, 862, 972
Hsp92II	CATG	7 cut(s)	116, 164, 359, 625, 856, 919, 1052
HspAI	GCGC	1 cut(s)	1244
Kzo9I	GATC	4 cut(s)	39, 196, 270, 1009
LmnI	GCTCC	2 cut(s)	611, 934
Lsp1109I	GCAGC	3 cut(s)	296, 911, 1005
LweI	GCATC	1 cut(s)	384
MaeI	CTAG	3 cut(s)	74, 246, 330
MaeIII	GTNAC	2 cut(s)	115, 871
MalI	GATC	4 cut(s)	41, 198, 272, 1011
MboI	GATC	4 cut(s)	39, 196, 270, 1009
MboII	GAAGA	6 cut(s)	20, 23, 234, 627, 1135, 1157
MhlI	GDGCHC	5 cut(s)	180, 269, 505, 863, 951
MlsI	TGGCCA	2 cut(s)	422, 669
MluNI	TGGCCA	2 cut(s)	422, 669
MlyI	GAGTC	2 cut(s)	464, 559
Mox20I	TGGCCA	2 cut(s)	422, 669
MscI	TGGCCA	2 cut(s)	422, 669
MseI	TTAA	3 cut(s)	768, 822, 1248
MslI	CAYNNNNRTG	3 cut(s)	383, 663, 851
Msp20I	TGGCCA	2 cut(s)	422, 669
MwoI	GCNNNNNNNGC	6 cut(s)	184, 536, 622, 675, 905, 935
NcoI	CCATGG	1 cut(s)	852
NdeII	GATC	4 cut(s)	39, 196, 270, 1009
NlaIII	CATG	7 cut(s)	116, 164, 359, 625, 856, 919, 1052
NlaIV	GGNNCC	3 cut(s)	538, 930, 939
NmuCI	GTSAC	1 cut(s)	115
PceI	AGGCCT	1 cut(s)	555
PfeI	GAWTC	2 cut(s)	479, 1253
PflFI	GACNNNGTC	1 cut(s)	454
PkrI	GCNGC	4 cut(s)	7, 286, 901, 1020
PleI	GAGTC	2 cut(s)	463, 559
PpsI	GAGTC	2 cut(s)	463, 559
Psp124BI	GAGCTC	1 cut(s)	863
PspFI	CCCAGC	1 cut(s)	1195
PspN4I	GGNNCC	3 cut(s)	538, 930, 939
PspPI	GGNCC	2 cut(s)	206, 989
PstI	CTGCAG	1 cut(s)	1023
PsyI	GACNNNGTC	1 cut(s)	454
RsaI	GTAC	1 cut(s)	764
RsaNI	GTAC	1 cut(s)	763
RseI	CAYNNNNRTG	3 cut(s)	383, 663, 851
Rsr2I	CGGWCCG	1 cut(s)	206
RsrII	CGGWCCG	1 cut(s)	206
SacI	GAGCTC	1 cut(s)	863
SaqAI	TTAA	3 cut(s)	768, 822, 1248
SatI	GCNGC	4 cut(s)	6, 285, 900, 1019
Sau3AI	GATC	4 cut(s)	39, 196, 270, 1009
Sau96I	GGNCC	2 cut(s)	206, 989
SchI	GAGTC	2 cut(s)	464, 559
SduI	GDGCHC	5 cut(s)	180, 269, 505, 863, 951
SfaNI	GCATC	1 cut(s)	384
SfcI	CTRYAG	1 cut(s)	1019
SinI	GGWCC	2 cut(s)	206, 989
SmiMI	CAYNNNNRTG	3 cut(s)	383, 663, 851
SmlI	CTYRAG	1 cut(s)	1228
SmoI	CTYRAG	1 cut(s)	1228
SseBI	AGGCCT	1 cut(s)	555
SsiI	CCGC	1 cut(s)	204
SspMI	CTAG	3 cut(s)	74, 246, 330
SstI	GAGCTC	1 cut(s)	863
StuI	AGGCCT	1 cut(s)	555
StyI	CCWWGG	3 cut(s)	120, 556, 852
TaaI	ACNGT	2 cut(s)	227, 838
TaqI	TCGA	1 cut(s)	269
TatI	WGTACW	1 cut(s)	762
TfiI	GAWTC	2 cut(s)	479, 1253
Tru1I	TTAA	3 cut(s)	768, 822, 1248
Tru9I	TTAA	3 cut(s)	768, 822, 1248
TscAI	CASTG	1 cut(s)	781
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	4 cut(s)	5, 284, 899, 1018
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	7 cut(s)	101, 146, 610, 627, 926, 1037, 1245
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	1 cut(s)	781
Tth111I	GACNNNGTC	1 cut(s)	454
VneI	GTGCAC	1 cut(s)	501
VpaK11BI	GGWCC	2 cut(s)	206, 989
XapI	RAATTY	3 cut(s)	684, 1044, 1057
XcmI	CCANNNNNNNNNTGG	2 cut(s)	187, 434
XspI	CTAG	3 cut(s)	74, 246, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.