AT5G19490

Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017507
Physical Location & Seq
Reverse (-)
6576510 .. 6578508
1999 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G19490.1

Sequence Viewer

Length: 795 bp
ATGAAGAAGAAGCTCCAGACACGTTTTCCAGCGACAAGGATTAAGAAGATTATGCAAACTGATGAGGAAGTTGGCAAAATAGCAATGGCAGTCCCTCTTCTTGTTTCTAAAGCTTTGGAGCTGTTTTTACAAGACTTGTGTAATCACACGTATGATGTAACTCTAAGCCGAGGTGCTAAAACTGTCAACGCCTTTCATTTGAAGCAGTGTGTGCAAGCGACTAATGTCTTTGATTTTCTAAGAGACACTGTCGCTAAAGTTCCTGATTTGGGTGGCTCAGACACTGAAGACCAATCAGCTACCAAAAGAAGGAAAGTTGTTGATGGAAGTAGTTGCAACGATGAAGATATGATAAAGACCACTCAAATGCATGAGGTCAAACATACTAGCTGTGGCAGAGGAAGGCGAGGTAGAGGCCGCGGACGAAGTAGTGGAAGAACAGGAAGTGGGCTGTCTCTAAAATTTGAAGAAGATTTAGAAGACGGTTCTCCCGAAAGCAGCAGGACCCCGTCTCCCGAAAACGGGAGCCTTTCTCACGACGATACATCTTGGAAGAAAGTTGCATCACACAACAATCATCATAGTAGTAACTCAGAGGTAAAAGTAAGGAACTTCGATCTTAATGTTGAATTAGATGAGAATGGAGACAATGCTACATGGCTGGAAACACAGCTAGAGAGAAGTCCAGATTACCCGTTGGAGATTAACGAAATGAAAATAGATCCTGATGATCAACAACAGGCTAGTGCTAGTGACGAGGAAGATTATGATGAAGAAAGCATAGACCAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

264

Amino Acids

29.56

Weight (kDa)

5.08

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 8 - 71 1e-17 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19490
fragaria_vesca FvH4_7g06930
rosa_chinensis RchiOBHm_Chr1g0336861
rosa_laevigata RLG00000029329
rosa_multiflora Rmu_sc0004920.1_g000001
rosa_roxburghii Rroxscaffold_4G00315290
rosa_rugosa Rorug01G0128400
rosa_samantha Rh1AG149200 Rh1BG117300 Rh1CG140400 Rh1DG156500
rosa_wichuraiana Rw1G012070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 420
AciI CCGC 2 cut(s) 418, 420
AclWI GGATC 1 cut(s) 716
AcsI RAATTY 1 cut(s) 461
AcuI CTGAAG 1 cut(s) 306
AfiI CCNNNNNNNGG 4 cut(s) 269, 309, 521, 522
AflIII ACRYGT 2 cut(s) 20, 147
AgsI TTSAA 3 cut(s) 202, 467, 629
AluBI AGCT 6 cut(s) 13, 113, 121, 299, 390, 673
AluI AGCT 6 cut(s) 13, 113, 121, 299, 390, 673
Alw26I GTCTC 4 cut(s) 237, 459, 516, 639
AlwI GGATC 1 cut(s) 716
AlwNI CAGNNNCTG 1 cut(s) 284
AoxI GGCC 1 cut(s) 415
ApeKI GCWGC 1 cut(s) 498
ApoI RAATTY 1 cut(s) 461
AspS9I GGNCC 1 cut(s) 504
AvaII GGWCC 1 cut(s) 504
BbsI GAAGAC 2 cut(s) 294, 486
BbvI GCAGC 1 cut(s) 510
BccI CCATC 1 cut(s) 317
BclI TGATCA 1 cut(s) 730
BcoDI GTCTC 4 cut(s) 237, 459, 516, 639
BfaI CTAG 4 cut(s) 387, 674, 744, 750
BisI GCNGC 2 cut(s) 418, 499
BlsI GCNGC 2 cut(s) 419, 500
Bme18I GGWCC 1 cut(s) 504
BmgT120I GGNCC 1 cut(s) 504
BmiI GGNNCC 2 cut(s) 506, 527
BmsI GCATC 1 cut(s) 572
BoxI GACNNNNGTC 1 cut(s) 224
BpiI GAAGAC 2 cut(s) 294, 486
BplI GAGNNNNNCTC 2 cut(s) 517, 549
BsaAI YACGTR 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 169, 418
BsaXI ACNNNNNCTCC 2 cut(s) 496, 526
Bsc4I CCNNNNNNNGG 4 cut(s) 269, 309, 521, 522
Bse3DI GCAATG 1 cut(s) 90
BseDI CCNNGG 2 cut(s) 169, 418
BseLI CCNNNNNNNGG 4 cut(s) 269, 309, 521, 522
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 2 cut(s) 291, 606
BseXI GCAGC 1 cut(s) 510
Bsh1236I CGCG 1 cut(s) 420
BshFI GGCC 1 cut(s) 417
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 4 cut(s) 269, 309, 521, 522
BsmAI GTCTC 4 cut(s) 237, 459, 516, 639
BsmBI CGTCTC 1 cut(s) 516
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 1 cut(s) 417
Bsp143I GATC 3 cut(s) 616, 721, 730
BspACI CCGC 2 cut(s) 418, 420
BspANI GGCC 1 cut(s) 417
BspCNI CTCAG 2 cut(s) 290, 605
BspFNI CGCG 1 cut(s) 420
BspLI GGNNCC 2 cut(s) 506, 527
BspPI GGATC 1 cut(s) 716
BsrDI GCAATG 1 cut(s) 90
BssECI CCNNGG 2 cut(s) 169, 418
BssMI GATC 3 cut(s) 616, 721, 730
Bst4CI ACNGT 3 cut(s) 184, 250, 485
Bst6I CTCTTC 1 cut(s) 102
BstAPI GCANNNNNTGC 1 cut(s) 211
BstBAI YACGTR 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 4 cut(s) 164, 239, 277, 592
BstDSI CCRYGG 1 cut(s) 418
BstFNI CGCG 1 cut(s) 420
BstKTI GATC 3 cut(s) 619, 724, 733
BstMAI GTCTC 4 cut(s) 237, 459, 516, 639
BstMBI GATC 3 cut(s) 616, 721, 730
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstPAI GACNNNNGTC 1 cut(s) 224
BstUI CGCG 1 cut(s) 420
BstV1I GCAGC 1 cut(s) 510
BstV2I GAAGAC 2 cut(s) 294, 486
BstX2I RGATCY 1 cut(s) 721
BstYI RGATCY 1 cut(s) 721
BsuRI GGCC 1 cut(s) 417
BtgI CCRYGG 1 cut(s) 418
BtsI GCAGTG 1 cut(s) 212
BtsIMutI CAGTG 3 cut(s) 212, 246, 282
Cac8I GCNNGC 1 cut(s) 216
CaiI CAGNNNCTG 1 cut(s) 284
Cfr13I GGNCC 1 cut(s) 504
Cfr42I CCGCGG 1 cut(s) 421
CviAII CATG 2 cut(s) 371, 657
DdeI CTNAG 4 cut(s) 164, 239, 277, 592
DpnI GATC 3 cut(s) 618, 723, 732
DpnII GATC 3 cut(s) 616, 721, 730
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 504
Eco57I CTGAAG 1 cut(s) 306
EcoO109I RGGNCCY 1 cut(s) 504
EcoT22I ATGCAT 1 cut(s) 372
Esp3I CGTCTC 1 cut(s) 516
FaeI CATG 2 cut(s) 374, 660
FaiI YATR 9 cut(s) 53, 153, 350, 372, 384, 582, 658, 768, 782
FaqI GGGAC 1 cut(s) 77
FatI CATG 2 cut(s) 370, 656
FbaI TGATCA 1 cut(s) 730
Fnu4HI GCNGC 2 cut(s) 418, 499
Fsp4HI GCNGC 2 cut(s) 418, 499
FspBI CTAG 4 cut(s) 387, 674, 744, 750
GluI GCNGC 2 cut(s) 418, 499
HaeIII GGCC 1 cut(s) 417
Hin1II CATG 2 cut(s) 374, 660
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HindIII AAGCTT 1 cut(s) 111
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 2 cut(s) 280, 595
Hpy188III TCNNGA 7 cut(s) 16, 263, 491, 515, 536, 686, 725
Hpy8I GTNNAC 1 cut(s) 187
Hpy99I CGWCG 1 cut(s) 542
HpyAV CCTTC 2 cut(s) 303, 396
HpyCH4III ACNGT 3 cut(s) 184, 250, 485
HpyCH4IV ACGT 2 cut(s) 22, 149
HpyCH4V TGCA 5 cut(s) 55, 214, 336, 370, 563
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpyF3I CTNAG 4 cut(s) 164, 239, 277, 592
HpySE526I ACGT 2 cut(s) 22, 149
Hsp92II CATG 2 cut(s) 374, 660
Ksp22I TGATCA 1 cut(s) 730
KspI CCGCGG 1 cut(s) 421
Kzo9I GATC 3 cut(s) 616, 721, 730
LmnI GCTCC 3 cut(s) 18, 118, 525
LpnPI CCDG 9 cut(s) 29, 42, 276, 426, 487, 647, 699, 725, 738
Lsp1109I GCAGC 1 cut(s) 510
LweI GCATC 1 cut(s) 572
MaeI CTAG 4 cut(s) 387, 674, 744, 750
MaeII ACGT 2 cut(s) 22, 149
MaeIII GTNAC 3 cut(s) 157, 587, 752
MalI GATC 3 cut(s) 618, 723, 732
MboI GATC 3 cut(s) 616, 721, 730
MflI RGATCY 1 cut(s) 721
MluCI AATT 2 cut(s) 461, 629
MmeI TCCRAC 1 cut(s) 678
MnlI CCTC 9 cut(s) 58, 105, 164, 367, 392, 401, 407, 589, 751
Mph1103I ATGCAT 1 cut(s) 372
MseI TTAA 3 cut(s) 42, 621, 705
MslI CAYNNNNRTG 2 cut(s) 150, 365
MspA1I CMGCKG 1 cut(s) 420
MvnI CGCG 1 cut(s) 420
MwoI GCNNNNNNNGC 1 cut(s) 211
NdeII GATC 3 cut(s) 616, 721, 730
NlaIII CATG 2 cut(s) 374, 660
NlaIV GGNNCC 2 cut(s) 506, 527
NmeAIII GCCGAG 1 cut(s) 194
NmuCI GTSAC 1 cut(s) 752
NsiI ATGCAT 1 cut(s) 372
PcsI WCGNNNNNNNCGW 1 cut(s) 489
PflFI GACNNNGTC 2 cut(s) 248, 508
PkrI GCNGC 2 cut(s) 419, 500
Ppu21I YACGTR 1 cut(s) 150
PpuMI RGGWCCY 1 cut(s) 504
PshAI GACNNNNGTC 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 504
PspN4I GGNNCC 2 cut(s) 506, 527
PspPI GGNCC 1 cut(s) 504
PspPPI RGGWCCY 1 cut(s) 504
PstNI CAGNNNCTG 1 cut(s) 284
PsuI RGATCY 1 cut(s) 721
PsyI GACNNNGTC 2 cut(s) 248, 508
RseI CAYNNNNRTG 2 cut(s) 150, 365
SacII CCGCGG 1 cut(s) 421
SaqAI TTAA 3 cut(s) 42, 621, 705
SatI GCNGC 2 cut(s) 418, 499
Sau3AI GATC 3 cut(s) 616, 721, 730
Sau96I GGNCC 1 cut(s) 504
SfaNI GCATC 1 cut(s) 572
Sfr303I CCGCGG 1 cut(s) 421
SgrBI CCGCGG 1 cut(s) 421
SinI GGWCC 1 cut(s) 504
SmiMI CAYNNNNRTG 2 cut(s) 150, 365
Sse9I AATT 2 cut(s) 461, 629
SsiI CCGC 2 cut(s) 418, 420
SspMI CTAG 4 cut(s) 387, 674, 744, 750
TaaI ACNGT 3 cut(s) 184, 250, 485
TaiI ACGT 2 cut(s) 25, 152
TaqI TCGA 1 cut(s) 615
TasI AATT 2 cut(s) 461, 629
TauI GCSGC 1 cut(s) 420
Tru1I TTAA 3 cut(s) 42, 621, 705
Tru9I TTAA 3 cut(s) 42, 621, 705
TscAI CASTG 3 cut(s) 212, 253, 289
TseFI GTSAC 1 cut(s) 752
TseI GCWGC 1 cut(s) 498
Tsp45I GTSAC 1 cut(s) 752
TspDTI ATGAA 5 cut(s) 17, 185, 357, 728, 786
TspRI CASTG 3 cut(s) 212, 253, 289
Tth111I GACNNNGTC 2 cut(s) 248, 508
VpaK11BI GGWCC 1 cut(s) 504
XapI RAATTY 1 cut(s) 461
XspI CTAG 4 cut(s) 387, 674, 744, 750
Zsp2I ATGCAT 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.