Rw1G012070

Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0017507
Physical Location & Seq
Reverse (-)
26992900 .. 26993929
1030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G012070.1

Sequence Viewer

Length: 858 bp
ATGAGGAAGAAGCTTGATACTCGTTTTCCCGCGGCTCGAATTAAGAAGATTATGCAAACCGATGAGGATGTTGGGAAGATAGCTTTGGCTGTGCCTCTCCTGGTTTCGAAAGCCTTGGAACTGTTTCTGCAGGATTTATGTGACCGGACTTATGACATAACCTCAAGAGGGGATGTTTTTGATTTCTTGAAGGATATTGTCAGTAAGGTTCCTGATCTAGGGGGCTCGGATGCTGTTGGGGAGGAATGTCCTGTTGCAAAGAGGAGGAAAGTGGCTGCTGATGATGAAGACACCGAGAGTGATGATGAGACCAAGAGGGCGGTTGCTGATGATGAAGACACTGATACTGATGATGAGTCCAAGACGAGTCTGATGGTGGGTAGGGGCAGGCCTAGAGGTCGCCCACGTGGTAGTCGGACAGCAGGGAGGGAGATAAGTGCAGCTAATGAGAAATATGAAGATGATTTGGATATTGATAAGCATGAGGACAAGCTTGATGAACCCCTTGAGTTGCTGGATGATGCAACAGAGCCTAAAGGGTCAAAGGAAAACGCTTCAGGTGACAATAGTGCAGAAACAGCTGCTCGGAATTTTGATTTGAATGTGGACTTGAATGAAAATGAGGATTCAACAACTACATCAGCTGCTATTCCTGGTCCTGTTCCAGCTCCTGCCCCTGCCCCTGTTCCTGATCCTGTTCCTGCTAATCAATTATCACAGTTCACGCCTGATATGAAGCATGTGGAATTCCTAGGTTGGCCTTTGACAGGCATGGAAAAGATGGCCATTGATCCCATGCAACTTGCCAATTTGACTAGGAGGATAGATGAGGAAGACGAAGATTATGATGAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

285

Amino Acids

31.39

Weight (kDa)

4.35

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 8 - 56 3.2e-12 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19490
fragaria_vesca FvH4_7g06930
rosa_chinensis RchiOBHm_Chr1g0336861
rosa_laevigata RLG00000029329
rosa_multiflora Rmu_sc0004920.1_g000001
rosa_roxburghii Rroxscaffold_4G00315290
rosa_rugosa Rorug01G0128400
rosa_samantha Rh1AG149200 Rh1BG117300 Rh1CG140400 Rh1DG156500
rosa_wichuraiana Rw1G012070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AciI CCGC 3 cut(s) 30, 32, 320
AclWI GGATC 2 cut(s) 686, 785
AcoI YGGCCR 1 cut(s) 783
AcsI RAATTY 2 cut(s) 589, 746
AcuI CTGAAG 1 cut(s) 540
AcvI CACGTG 1 cut(s) 407
AfiI CCNNNNNNNGG 3 cut(s) 168, 218, 767
AgsI TTSAA 4 cut(s) 190, 601, 613, 630
AjnI CCWGG 2 cut(s) 99, 652
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 7 cut(s) 13, 83, 443, 493, 581, 644, 668
AluI AGCT 7 cut(s) 13, 83, 443, 493, 581, 644, 668
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 2 cut(s) 686, 785
AlwNI CAGNNNCTG 1 cut(s) 671
AoxI GGCC 3 cut(s) 389, 758, 783
ApeKI GCWGC 4 cut(s) 275, 440, 581, 644
ApoI RAATTY 2 cut(s) 589, 746
Asp700I GAANNNNTTC 1 cut(s) 123
AspA2I CCTAGG 1 cut(s) 751
AspS9I GGNCC 1 cut(s) 656
AsuHPI GGTGA 1 cut(s) 572
AsuII TTCGAA 1 cut(s) 107
AvaII GGWCC 1 cut(s) 656
AvrII CCTAGG 1 cut(s) 751
BalI TGGCCA 1 cut(s) 785
BanII GRGCYC 1 cut(s) 227
BbrPI CACGTG 1 cut(s) 407
BbsI GAAGAC 3 cut(s) 294, 342, 840
BbvI GCAGC 4 cut(s) 262, 452, 568, 631
BccI CCATC 2 cut(s) 367, 775
BciT130I CCWGG 2 cut(s) 101, 654
BcoDI GTCTC 1 cut(s) 302
BfaI CTAG 4 cut(s) 218, 393, 752, 816
BfmI CTRYAG 1 cut(s) 128
BisI GCNGC 5 cut(s) 33, 276, 441, 582, 645
BlnI CCTAGG 1 cut(s) 751
BlsI GCNGC 5 cut(s) 34, 277, 442, 583, 646
Bme1390I CCNGG 2 cut(s) 101, 654
Bme18I GGWCC 1 cut(s) 656
BmgT120I GGNCC 1 cut(s) 656
BmiI GGNNCC 1 cut(s) 210
BmrFI CCNGG 2 cut(s) 101, 654
BmsI GCATC 2 cut(s) 220, 511
BpiI GAAGAC 3 cut(s) 294, 342, 840
Bpu14I TTCGAA 1 cut(s) 107
BpuEI CTTGAG 2 cut(s) 148, 527
BsaAI YACGTR 1 cut(s) 407
BsaI GGTCTC 1 cut(s) 302
BsaJI CCNNGG 3 cut(s) 30, 114, 751
BsaWI WCCGGW 1 cut(s) 144
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 218, 767
BseBI CCWGG 2 cut(s) 101, 654
BseDI CCNNGG 3 cut(s) 30, 114, 751
BseGI GGATG 4 cut(s) 73, 178, 235, 523
BseLI CCNNNNNNNGG 3 cut(s) 168, 218, 767
BseRI GAGGAG 1 cut(s) 277
BseXI GCAGC 4 cut(s) 262, 452, 568, 631
BsgI GTGCAG 2 cut(s) 459, 591
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 3 cut(s) 391, 760, 785
BsiSI CCGG 1 cut(s) 145
BslI CCNNNNNNNGG 3 cut(s) 168, 218, 767
BsmAI GTCTC 1 cut(s) 302
BsnI GGCC 3 cut(s) 391, 760, 785
Bso31I GGTCTC 1 cut(s) 302
Bsp119I TTCGAA 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 227
Bsp143I GATC 3 cut(s) 214, 691, 790
BspACI CCGC 3 cut(s) 30, 32, 320
BspANI GGCC 3 cut(s) 391, 760, 785
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 210
BspMAI CTGCAG 1 cut(s) 132
BspPI GGATC 2 cut(s) 686, 785
BspT104I TTCGAA 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 302
BssECI CCNNGG 3 cut(s) 30, 114, 751
BssMI GATC 3 cut(s) 214, 691, 790
BssT1I CCWWGG 2 cut(s) 114, 751
Bst2UI CCWGG 2 cut(s) 101, 654
Bst4CI ACNGT 2 cut(s) 123, 720
BstBAI YACGTR 1 cut(s) 407
BstBI TTCGAA 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 389
BstDSI CCRYGG 1 cut(s) 30
BstENI CCTNNNNNAGG 2 cut(s) 216, 765
BstF5I GGATG 4 cut(s) 73, 178, 235, 523
BstFNI CGCG 1 cut(s) 32
BstKTI GATC 3 cut(s) 217, 694, 793
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 3 cut(s) 214, 691, 790
BstMWI GCNNNNNNNGC 1 cut(s) 578
BstNI CCWGG 2 cut(s) 101, 654
BstNSI RCATGY 1 cut(s) 743
BstSCI CCNGG 2 cut(s) 99, 652
BstSFI CTRYAG 1 cut(s) 128
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 4 cut(s) 262, 452, 568, 631
BstV2I GAAGAC 3 cut(s) 294, 342, 840
BsuRI GGCC 3 cut(s) 391, 760, 785
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 4 cut(s) 73, 178, 235, 523
BtsIMutI CAGTG 1 cut(s) 339
Cac8I GCNNGC 1 cut(s) 389
CaiI CAGNNNCTG 1 cut(s) 671
Cfr13I GGNCC 1 cut(s) 656
Cfr42I CCGCGG 1 cut(s) 33
CviAII CATG 4 cut(s) 482, 740, 772, 796
DpnI GATC 3 cut(s) 216, 693, 792
DpnII GATC 3 cut(s) 214, 691, 790
EaeI YGGCCR 1 cut(s) 783
Eco130I CCWWGG 2 cut(s) 114, 751
Eco147I AGGCCT 1 cut(s) 391
Eco24I GRGCYC 1 cut(s) 227
Eco31I GGTCTC 1 cut(s) 302
Eco47I GGWCC 1 cut(s) 656
Eco57I CTGAAG 1 cut(s) 540
Eco72I CACGTG 1 cut(s) 407
EcoNI CCTNNNNNAGG 2 cut(s) 216, 765
EcoRI GAATTC 1 cut(s) 746
EcoRII CCWGG 2 cut(s) 99, 652
EcoT14I CCWWGG 2 cut(s) 114, 751
EcoT38I GRGCYC 1 cut(s) 227
ErhI CCWWGG 2 cut(s) 114, 751
FaeI CATG 4 cut(s) 485, 743, 775, 799
FatI CATG 4 cut(s) 481, 739, 771, 795
FauI CCCGC 1 cut(s) 37
Fnu4HI GCNGC 5 cut(s) 33, 276, 441, 582, 645
FokI GGATG 4 cut(s) 80, 185, 242, 530
FriOI GRGCYC 1 cut(s) 227
Fsp4HI GCNGC 5 cut(s) 33, 276, 441, 582, 645
FspBI CTAG 4 cut(s) 218, 393, 752, 816
GluI GCNGC 5 cut(s) 33, 276, 441, 582, 645
HaeIII GGCC 3 cut(s) 391, 760, 785
HapII CCGG 1 cut(s) 145
Hin1II CATG 4 cut(s) 485, 743, 775, 799
HindIII AAGCTT 2 cut(s) 11, 491
HinfI GANTC 3 cut(s) 356, 367, 626
HpaII CCGG 1 cut(s) 145
HphI GGTGA 1 cut(s) 572
Hpy166II GTNNAC 2 cut(s) 607, 723
Hpy188I TCNGA 4 cut(s) 229, 372, 417, 588
Hpy188III TCNNGA 4 cut(s) 165, 187, 212, 689
Hpy8I GTNNAC 2 cut(s) 607, 723
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 2 cut(s) 123, 720
HpyCH4IV ACGT 1 cut(s) 406
HpyCH4V TGCA 7 cut(s) 55, 130, 257, 440, 524, 572, 799
HpyF10VI GCNNNNNNNGC 1 cut(s) 578
HpySE526I ACGT 1 cut(s) 406
Hsp92II CATG 4 cut(s) 485, 743, 775, 799
KspI CCGCGG 1 cut(s) 33
Kzo9I GATC 3 cut(s) 214, 691, 790
LmnI GCTCC 1 cut(s) 673
Lsp1109I GCAGC 4 cut(s) 262, 452, 568, 631
LweI GCATC 2 cut(s) 220, 511
MaeI CTAG 4 cut(s) 218, 393, 752, 816
MaeII ACGT 1 cut(s) 406
MaeIII GTNAC 2 cut(s) 140, 560
MalI GATC 3 cut(s) 216, 693, 792
MboI GATC 3 cut(s) 214, 691, 790
MboII GAAGA 8 cut(s) 19, 58, 88, 299, 347, 470, 845, 851
MhlI GDGCHC 1 cut(s) 227
MlsI TGGCCA 1 cut(s) 785
MluCI AATT 5 cut(s) 39, 589, 710, 746, 808
MluNI TGGCCA 1 cut(s) 785
MlyI GAGTC 2 cut(s) 365, 376
MmeI TCCRAC 1 cut(s) 395
Mox20I TGGCCA 1 cut(s) 785
MroXI GAANNNNTTC 1 cut(s) 123
MscI TGGCCA 1 cut(s) 785
MseI TTAA 1 cut(s) 42
Msp20I TGGCCA 1 cut(s) 785
MspA1I CMGCKG 3 cut(s) 32, 581, 644
MspI CCGG 1 cut(s) 145
MspR9I CCNGG 2 cut(s) 101, 654
MvaI CCWGG 2 cut(s) 101, 654
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 578
NdeII GATC 3 cut(s) 214, 691, 790
NlaIII CATG 4 cut(s) 485, 743, 775, 799
NlaIV GGNNCC 1 cut(s) 210
NmuCI GTSAC 2 cut(s) 140, 560
NspI RCATGY 1 cut(s) 743
NspV TTCGAA 1 cut(s) 107
PceI AGGCCT 1 cut(s) 391
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 626
PkrI GCNGC 5 cut(s) 34, 277, 442, 583, 646
PleI GAGTC 2 cut(s) 364, 375
PmaCI CACGTG 1 cut(s) 407
PmlI CACGTG 1 cut(s) 407
PpsI GAGTC 2 cut(s) 364, 375
Ppu21I YACGTR 1 cut(s) 407
Psp6I CCWGG 2 cut(s) 99, 652
PspCI CACGTG 1 cut(s) 407
PspGI CCWGG 2 cut(s) 99, 652
PspN4I GGNNCC 1 cut(s) 210
PspPI GGNCC 1 cut(s) 656
PstI CTGCAG 1 cut(s) 132
PstNI CAGNNNCTG 1 cut(s) 671
PvuII CAGCTG 2 cut(s) 581, 644
SacII CCGCGG 1 cut(s) 33
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 5 cut(s) 33, 276, 441, 582, 645
Sau3AI GATC 3 cut(s) 214, 691, 790
Sau96I GGNCC 1 cut(s) 656
SchI GAGTC 2 cut(s) 365, 376
ScrFI CCNGG 2 cut(s) 101, 654
SduI GDGCHC 1 cut(s) 227
SfaNI GCATC 2 cut(s) 220, 511
SfcI CTRYAG 1 cut(s) 128
Sfr303I CCGCGG 1 cut(s) 33
SfuI TTCGAA 1 cut(s) 107
SgrBI CCGCGG 1 cut(s) 33
SinI GGWCC 1 cut(s) 656
SmlI CTYRAG 2 cut(s) 163, 506
SmoI CTYRAG 2 cut(s) 163, 506
Sse9I AATT 5 cut(s) 39, 589, 710, 746, 808
SseBI AGGCCT 1 cut(s) 391
SsiI CCGC 3 cut(s) 30, 32, 320
SspMI CTAG 4 cut(s) 218, 393, 752, 816
StuI AGGCCT 1 cut(s) 391
StyD4I CCNGG 2 cut(s) 99, 652
StyI CCWWGG 2 cut(s) 114, 751
TaaI ACNGT 2 cut(s) 123, 720
TaiI ACGT 1 cut(s) 409
TaqI TCGA 2 cut(s) 37, 107
TasI AATT 5 cut(s) 39, 589, 710, 746, 808
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 1 cut(s) 626
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 2 cut(s) 140, 560
TseI GCWGC 4 cut(s) 275, 440, 581, 644
Tsp45I GTSAC 2 cut(s) 140, 560
TspDTI ATGAA 6 cut(s) 300, 348, 471, 513, 630, 749
TspRI CASTG 1 cut(s) 346
VpaK11BI GGWCC 1 cut(s) 656
XagI CCTNNNNNAGG 2 cut(s) 216, 765
XapI RAATTY 2 cut(s) 589, 746
XceI RCATGY 1 cut(s) 743
XmaJI CCTAGG 1 cut(s) 751
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 4 cut(s) 218, 393, 752, 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.