Rh1BG117300

Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0017507
Physical Location & Seq
Reverse (-)
20075725 .. 20079030
3306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG117300.1

Sequence Viewer

Length: 1038 bp
ATGAGGAAGAAGCTTGATACTCGTTTTCCCGCGGCTCGAATTAAGAAGATTATGCAAACCGATGAGGATGTTGGGAAGATAGCTTTGGCTGTACCTCTCCTGGTTTCGAAAGCCTTGGAACTGTTTCTGCAGGATTTATGTGATCGGACTTATGACATAACCCTCAAGAGGGGAGCCAAGACAATGAATTCTCTGCATTTGAAACAGTGTGTCAAGACCTTCAGTGTTTTTGATTTCTTGAAGGATATTGTCAGTAAGGTTCCTGATCTAGGGGGCTCGGATGCTGTTGGGGAGGAATGTCCGGTTGCAAAGAGGAGGAAAGTGGCTGCCGATGATGAAGACACCGAGAGTGATGATGAGACCAAGAGGGGTAAGATGACGAATGACGCTGGTAATACTGTTGGAAGTGGCAGAGGAAGGGGTAGAGGCAGAGGAAGGGGGAGGAAGGCGGTTGCCGATGATGAAGACACTGATACTGATGATGAGTCCAAGACGAGTCTGATGGTGCATGATGCTGGTAACACCATTGGAAGTGGCCGAGGAAGAGGAAGGGGTAGGGGCAGGCCTAGAGGTCGCCCACGTGGTAGTCGGACAGCAGGGAGGGAGATAAGTGCAGCTAATGAGAAATATGAAGATGATTTGGACGTTGATAAGCATGAGGACAAGCTTGATGAGCCCCTTGAGTTGCTGGATGATGCAACAGAGCATAAAGGGTCAAAGGAAACCGCTTCAGGTGGCAATAGTGCAGAAACAGCAGCTCGCAATTTTGATCTGAATGTGGACTTGAATGAAAATGAGGATTCAACAACTACATCAGCCGCTGTTCCTGTTCCTGTTCCAGCTCCTGCTCCTGCTCCTGTTTCTGTACCTGTTCCTGTTCCTGCTAATCAATCATCACAGTTCACGCCTGATATGAAGCATGTGGAATTTCTAGGTTGGCCTTTGACAGGCATGGAAAAGATGGCCATTGATCCCATGCAACTTGCCAATTTGACTAGGAGGATAGATGAGGAAGAGGAAGATTATGATGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

345

Amino Acids

37.62

Weight (kDa)

4.99

Isoelectric Point (pI)

39.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 8 - 71 2e-18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19490
fragaria_vesca FvH4_7g06930
rosa_chinensis RchiOBHm_Chr1g0336861
rosa_laevigata RLG00000029329
rosa_multiflora Rmu_sc0004920.1_g000001
rosa_roxburghii Rroxscaffold_4G00315290
rosa_rugosa Rorug01G0128400
rosa_samantha Rh1AG149200 Rh1BG117300 Rh1CG140400 Rh1DG156500
rosa_wichuraiana Rw1G012070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AciI CCGC 5 cut(s) 30, 32, 449, 726, 819
AclWI GGATC 1 cut(s) 965
AcoI YGGCCR 2 cut(s) 535, 963
AcsI RAATTY 2 cut(s) 187, 926
AcuI CTGAAG 2 cut(s) 205, 714
AcvI CACGTG 1 cut(s) 581
AfaI GTAC 2 cut(s) 93, 867
AfiI CCNNNNNNNGG 4 cut(s) 168, 169, 269, 947
AgsI TTSAA 4 cut(s) 202, 241, 787, 804
AjnI CCWGG 1 cut(s) 99
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 6 cut(s) 13, 83, 617, 667, 758, 842
AluI AGCT 6 cut(s) 13, 83, 617, 667, 758, 842
Alw26I GTCTC 1 cut(s) 353
AlwI GGATC 1 cut(s) 965
AlwNI CAGNNNCTG 2 cut(s) 821, 845
AoxI GGCC 4 cut(s) 535, 563, 938, 963
ApeKI GCWGC 3 cut(s) 326, 614, 755
ApoI RAATTY 2 cut(s) 187, 926
Asp700I GAANNNNTTC 1 cut(s) 123
AsuII TTCGAA 1 cut(s) 107
BalI TGGCCA 1 cut(s) 965
BanII GRGCYC 2 cut(s) 278, 678
BbrPI CACGTG 1 cut(s) 581
BbsI GAAGAC 2 cut(s) 345, 471
BbvI GCAGC 3 cut(s) 313, 626, 767
BccI CCATC 2 cut(s) 496, 955
BciT130I CCWGG 1 cut(s) 101
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 4 cut(s) 269, 567, 932, 996
BfmI CTRYAG 1 cut(s) 128
BisI GCNGC 5 cut(s) 33, 327, 615, 756, 819
BlsI GCNGC 5 cut(s) 34, 328, 616, 757, 820
Bme1390I CCNGG 1 cut(s) 101
BmiI GGNNCC 2 cut(s) 175, 261
BmrFI CCNGG 1 cut(s) 101
BmsI GCATC 3 cut(s) 271, 502, 685
BpiI GAAGAC 2 cut(s) 345, 471
Bpu14I TTCGAA 1 cut(s) 107
BpuEI CTTGAG 2 cut(s) 149, 701
BsaAI YACGTR 1 cut(s) 581
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 3 cut(s) 30, 114, 538
BsaWI WCCGGW 1 cut(s) 301
Bsc4I CCNNNNNNNGG 4 cut(s) 168, 169, 269, 947
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 3 cut(s) 30, 114, 538
BseGI GGATG 3 cut(s) 73, 286, 697
BseLI CCNNNNNNNGG 4 cut(s) 168, 169, 269, 947
BseRI GAGGAG 1 cut(s) 328
BseXI GCAGC 3 cut(s) 313, 626, 767
BsgI GTGCAG 2 cut(s) 633, 765
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 4 cut(s) 537, 565, 940, 965
BsiSI CCGG 1 cut(s) 302
BslI CCNNNNNNNGG 4 cut(s) 168, 169, 269, 947
BsmAI GTCTC 1 cut(s) 353
BsnI GGCC 4 cut(s) 537, 565, 940, 965
Bso31I GGTCTC 1 cut(s) 353
Bsp119I TTCGAA 1 cut(s) 107
Bsp1286I GDGCHC 2 cut(s) 278, 678
Bsp143I GATC 4 cut(s) 142, 265, 769, 970
BspACI CCGC 5 cut(s) 30, 32, 449, 726, 819
BspANI GGCC 4 cut(s) 537, 565, 940, 965
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 2 cut(s) 175, 261
BspMAI CTGCAG 1 cut(s) 132
BspPI GGATC 1 cut(s) 965
BspT104I TTCGAA 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 353
BssECI CCNNGG 3 cut(s) 30, 114, 538
BssMI GATC 4 cut(s) 142, 265, 769, 970
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 4 cut(s) 123, 207, 400, 900
Bst6I CTCTTC 2 cut(s) 538, 1008
BstBAI YACGTR 1 cut(s) 581
BstBI TTCGAA 1 cut(s) 107
BstC8I GCNNGC 2 cut(s) 563, 760
BstDSI CCRYGG 1 cut(s) 30
BstENI CCTNNNNNAGG 2 cut(s) 267, 945
BstF5I GGATG 3 cut(s) 73, 286, 697
BstFNI CGCG 1 cut(s) 32
BstKTI GATC 4 cut(s) 145, 268, 772, 973
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 4 cut(s) 142, 265, 769, 970
BstMWI GCNNNNNNNGC 2 cut(s) 673, 752
BstNI CCWGG 1 cut(s) 101
BstNSI RCATGY 1 cut(s) 923
BstSCI CCNGG 1 cut(s) 99
BstSFI CTRYAG 1 cut(s) 128
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 3 cut(s) 313, 626, 767
BstV2I GAAGAC 2 cut(s) 345, 471
BsuRI GGCC 4 cut(s) 537, 565, 940, 965
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 3 cut(s) 73, 286, 697
BtsIMutI CAGTG 3 cut(s) 212, 229, 468
Cac8I GCNNGC 2 cut(s) 563, 760
CaiI CAGNNNCTG 2 cut(s) 821, 845
Cfr42I CCGCGG 1 cut(s) 33
CseI GACGC 1 cut(s) 395
Csp6I GTAC 2 cut(s) 92, 866
CviAII CATG 5 cut(s) 509, 656, 920, 952, 976
CviQI GTAC 2 cut(s) 92, 866
DpnI GATC 4 cut(s) 144, 267, 771, 972
DpnII GATC 4 cut(s) 142, 265, 769, 970
EaeI YGGCCR 2 cut(s) 535, 963
Eam1104I CTCTTC 2 cut(s) 538, 1008
EarI CTCTTC 2 cut(s) 538, 1008
Eco130I CCWWGG 1 cut(s) 114
Eco147I AGGCCT 1 cut(s) 565
Eco24I GRGCYC 2 cut(s) 278, 678
Eco31I GGTCTC 1 cut(s) 353
Eco57I CTGAAG 2 cut(s) 205, 714
Eco72I CACGTG 1 cut(s) 581
EcoNI CCTNNNNNAGG 2 cut(s) 267, 945
EcoRI GAATTC 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 2 cut(s) 278, 678
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 5 cut(s) 512, 659, 923, 955, 979
FatI CATG 5 cut(s) 508, 655, 919, 951, 975
FauI CCCGC 1 cut(s) 37
Fnu4HI GCNGC 5 cut(s) 33, 327, 615, 756, 819
FokI GGATG 3 cut(s) 80, 293, 704
FriOI GRGCYC 2 cut(s) 278, 678
Fsp4HI GCNGC 5 cut(s) 33, 327, 615, 756, 819
FspBI CTAG 4 cut(s) 269, 567, 932, 996
GluI GCNGC 5 cut(s) 33, 327, 615, 756, 819
HaeIII GGCC 4 cut(s) 537, 565, 940, 965
HapII CCGG 1 cut(s) 302
HgaI GACGC 1 cut(s) 395
Hin1II CATG 5 cut(s) 512, 659, 923, 955, 979
HindIII AAGCTT 2 cut(s) 11, 665
HinfI GANTC 3 cut(s) 485, 496, 800
HpaII CCGG 1 cut(s) 302
Hpy166II GTNNAC 2 cut(s) 781, 903
Hpy188I TCNGA 5 cut(s) 147, 280, 501, 591, 774
Hpy188III TCNNGA 4 cut(s) 166, 214, 238, 263
Hpy8I GTNNAC 2 cut(s) 781, 903
HpyAV CCTTC 6 cut(s) 229, 235, 411, 429, 439, 543
HpyCH4III ACNGT 4 cut(s) 123, 207, 400, 900
HpyCH4IV ACGT 2 cut(s) 580, 645
HpyCH4V TGCA 9 cut(s) 55, 130, 196, 308, 508, 614, 698, 746, 979
HpyF10VI GCNNNNNNNGC 2 cut(s) 673, 752
HpySE526I ACGT 2 cut(s) 580, 645
Hsp92II CATG 5 cut(s) 512, 659, 923, 955, 979
KspI CCGCGG 1 cut(s) 33
Kzo9I GATC 4 cut(s) 142, 265, 769, 970
LmnI GCTCC 4 cut(s) 173, 847, 853, 859
Lsp1109I GCAGC 3 cut(s) 313, 626, 767
LweI GCATC 3 cut(s) 271, 502, 685
MaeI CTAG 4 cut(s) 269, 567, 932, 996
MaeII ACGT 2 cut(s) 580, 645
MaeIII GTNAC 1 cut(s) 518
MalI GATC 4 cut(s) 144, 267, 771, 972
MboI GATC 4 cut(s) 142, 265, 769, 970
MboII GAAGA 9 cut(s) 19, 58, 88, 350, 476, 555, 644, 1025, 1031
MhlI GDGCHC 2 cut(s) 278, 678
MlsI TGGCCA 1 cut(s) 965
MluCI AATT 5 cut(s) 39, 187, 763, 926, 988
MluNI TGGCCA 1 cut(s) 965
MlyI GAGTC 2 cut(s) 494, 505
MmeI TCCRAC 2 cut(s) 382, 569
Mox20I TGGCCA 1 cut(s) 965
MroXI GAANNNNTTC 1 cut(s) 123
MscI TGGCCA 1 cut(s) 965
MseI TTAA 2 cut(s) 42, 1036
Msp20I TGGCCA 1 cut(s) 965
MspA1I CMGCKG 2 cut(s) 32, 821
MspI CCGG 1 cut(s) 302
MspR9I CCNGG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 101
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 673, 752
NdeII GATC 4 cut(s) 142, 265, 769, 970
NlaIII CATG 5 cut(s) 512, 659, 923, 955, 979
NlaIV GGNNCC 2 cut(s) 175, 261
NmeAIII GCCGAG 1 cut(s) 563
NspI RCATGY 1 cut(s) 923
NspV TTCGAA 1 cut(s) 107
PceI AGGCCT 1 cut(s) 565
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 800
PkrI GCNGC 5 cut(s) 34, 328, 616, 757, 820
PleI GAGTC 2 cut(s) 493, 504
PmaCI CACGTG 1 cut(s) 581
PmlI CACGTG 1 cut(s) 581
PpsI GAGTC 2 cut(s) 493, 504
Ppu21I YACGTR 1 cut(s) 581
Psp6I CCWGG 1 cut(s) 99
PspCI CACGTG 1 cut(s) 581
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 2 cut(s) 175, 261
PstI CTGCAG 1 cut(s) 132
PstNI CAGNNNCTG 2 cut(s) 821, 845
RsaI GTAC 2 cut(s) 93, 867
RsaNI GTAC 2 cut(s) 92, 866
SacII CCGCGG 1 cut(s) 33
SaqAI TTAA 2 cut(s) 42, 1036
SatI GCNGC 5 cut(s) 33, 327, 615, 756, 819
Sau3AI GATC 4 cut(s) 142, 265, 769, 970
SchI GAGTC 2 cut(s) 494, 505
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 2 cut(s) 278, 678
SfaNI GCATC 3 cut(s) 271, 502, 685
SfcI CTRYAG 1 cut(s) 128
Sfr303I CCGCGG 1 cut(s) 33
SfuI TTCGAA 1 cut(s) 107
SgrBI CCGCGG 1 cut(s) 33
SmlI CTYRAG 2 cut(s) 164, 680
SmoI CTYRAG 2 cut(s) 164, 680
Sse9I AATT 5 cut(s) 39, 187, 763, 926, 988
SseBI AGGCCT 1 cut(s) 565
SsiI CCGC 5 cut(s) 30, 32, 449, 726, 819
SspMI CTAG 4 cut(s) 269, 567, 932, 996
StuI AGGCCT 1 cut(s) 565
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 4 cut(s) 123, 207, 400, 900
TaiI ACGT 2 cut(s) 583, 648
TaqI TCGA 2 cut(s) 37, 107
TasI AATT 5 cut(s) 39, 187, 763, 926, 988
TauI GCSGC 2 cut(s) 35, 821
TfiI GAWTC 1 cut(s) 800
Tru1I TTAA 2 cut(s) 42, 1036
Tru9I TTAA 2 cut(s) 42, 1036
TscAI CASTG 3 cut(s) 212, 229, 475
TseI GCWGC 3 cut(s) 326, 614, 755
TspDTI ATGAA 6 cut(s) 200, 351, 477, 645, 804, 929
TspRI CASTG 3 cut(s) 212, 229, 475
XagI CCTNNNNNAGG 2 cut(s) 267, 945
XapI RAATTY 2 cut(s) 187, 926
XceI RCATGY 1 cut(s) 923
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 4 cut(s) 269, 567, 932, 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.